| Rank | GO Term | Adjusted P value |
|---|
| 1 | GO:0000455: enzyme-directed rRNA pseudouridine synthesis | 0.00E+00 |
| 2 | GO:0017038: protein import | 0.00E+00 |
| 3 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 4 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 5 | GO:0010081: regulation of inflorescence meristem growth | 0.00E+00 |
| 6 | GO:0019323: pentose catabolic process | 0.00E+00 |
| 7 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 8 | GO:0080127: fruit septum development | 0.00E+00 |
| 9 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 10 | GO:1905177: tracheary element differentiation | 0.00E+00 |
| 11 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 12 | GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 13 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 14 | GO:0001778: plasma membrane repair | 0.00E+00 |
| 15 | GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 16 | GO:0042407: cristae formation | 0.00E+00 |
| 17 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 18 | GO:1905255: regulation of RNA binding transcription factor activity | 0.00E+00 |
| 19 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 20 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 21 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 22 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 23 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 24 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 25 | GO:0070979: protein K11-linked ubiquitination | 0.00E+00 |
| 26 | GO:0046620: regulation of organ growth | 1.00E-05 |
| 27 | GO:0009733: response to auxin | 1.48E-05 |
| 28 | GO:1900865: chloroplast RNA modification | 3.54E-05 |
| 29 | GO:0009734: auxin-activated signaling pathway | 4.37E-05 |
| 30 | GO:0018026: peptidyl-lysine monomethylation | 6.03E-05 |
| 31 | GO:0040008: regulation of growth | 6.18E-05 |
| 32 | GO:0009658: chloroplast organization | 7.05E-05 |
| 33 | GO:0015995: chlorophyll biosynthetic process | 8.18E-05 |
| 34 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.00E-04 |
| 35 | GO:0046739: transport of virus in multicellular host | 3.56E-04 |
| 36 | GO:0016556: mRNA modification | 3.56E-04 |
| 37 | GO:0010027: thylakoid membrane organization | 3.76E-04 |
| 38 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.76E-04 |
| 39 | GO:0010182: sugar mediated signaling pathway | 7.93E-04 |
| 40 | GO:0010158: abaxial cell fate specification | 8.50E-04 |
| 41 | GO:0016123: xanthophyll biosynthetic process | 8.50E-04 |
| 42 | GO:0010582: floral meristem determinacy | 8.74E-04 |
| 43 | GO:0009416: response to light stimulus | 9.88E-04 |
| 44 | GO:0009959: negative gravitropism | 1.17E-03 |
| 45 | GO:0042793: transcription from plastid promoter | 1.17E-03 |
| 46 | GO:0016554: cytidine to uridine editing | 1.17E-03 |
| 47 | GO:0010207: photosystem II assembly | 1.21E-03 |
| 48 | GO:0010020: chloroplast fission | 1.21E-03 |
| 49 | GO:0005991: trehalose metabolic process | 1.24E-03 |
| 50 | GO:0048363: mucilage pectin metabolic process | 1.24E-03 |
| 51 | GO:0010450: inflorescence meristem growth | 1.24E-03 |
| 52 | GO:0009090: homoserine biosynthetic process | 1.24E-03 |
| 53 | GO:0070509: calcium ion import | 1.24E-03 |
| 54 | GO:0044262: cellular carbohydrate metabolic process | 1.24E-03 |
| 55 | GO:0042659: regulation of cell fate specification | 1.24E-03 |
| 56 | GO:0043266: regulation of potassium ion transport | 1.24E-03 |
| 57 | GO:0010063: positive regulation of trichoblast fate specification | 1.24E-03 |
| 58 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.24E-03 |
| 59 | GO:0000025: maltose catabolic process | 1.24E-03 |
| 60 | GO:0010480: microsporocyte differentiation | 1.24E-03 |
| 61 | GO:0010080: regulation of floral meristem growth | 1.24E-03 |
| 62 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 1.24E-03 |
| 63 | GO:0042759: long-chain fatty acid biosynthetic process | 1.24E-03 |
| 64 | GO:0042371: vitamin K biosynthetic process | 1.24E-03 |
| 65 | GO:2000021: regulation of ion homeostasis | 1.24E-03 |
| 66 | GO:0005980: glycogen catabolic process | 1.24E-03 |
| 67 | GO:0030198: extracellular matrix organization | 1.24E-03 |
| 68 | GO:0035987: endodermal cell differentiation | 1.24E-03 |
| 69 | GO:0090558: plant epidermis development | 1.24E-03 |
| 70 | GO:0051247: positive regulation of protein metabolic process | 1.24E-03 |
| 71 | GO:1902458: positive regulation of stomatal opening | 1.24E-03 |
| 72 | GO:0015904: tetracycline transport | 1.24E-03 |
| 73 | GO:2000905: negative regulation of starch metabolic process | 1.24E-03 |
| 74 | GO:0006631: fatty acid metabolic process | 1.29E-03 |
| 75 | GO:0042372: phylloquinone biosynthetic process | 1.55E-03 |
| 76 | GO:0030488: tRNA methylation | 1.55E-03 |
| 77 | GO:0048437: floral organ development | 1.99E-03 |
| 78 | GO:2000070: regulation of response to water deprivation | 2.49E-03 |
| 79 | GO:0009793: embryo development ending in seed dormancy | 2.67E-03 |
| 80 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.75E-03 |
| 81 | GO:1900871: chloroplast mRNA modification | 2.75E-03 |
| 82 | GO:0006432: phenylalanyl-tRNA aminoacylation | 2.75E-03 |
| 83 | GO:1900033: negative regulation of trichome patterning | 2.75E-03 |
| 84 | GO:0071668: plant-type cell wall assembly | 2.75E-03 |
| 85 | GO:0060359: response to ammonium ion | 2.75E-03 |
| 86 | GO:0048255: mRNA stabilization | 2.75E-03 |
| 87 | GO:0080009: mRNA methylation | 2.75E-03 |
| 88 | GO:0009786: regulation of asymmetric cell division | 2.75E-03 |
| 89 | GO:0046740: transport of virus in host, cell to cell | 2.75E-03 |
| 90 | GO:0031648: protein destabilization | 2.75E-03 |
| 91 | GO:0001682: tRNA 5'-leader removal | 2.75E-03 |
| 92 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.75E-03 |
| 93 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.75E-03 |
| 94 | GO:0006568: tryptophan metabolic process | 2.75E-03 |
| 95 | GO:2000123: positive regulation of stomatal complex development | 2.75E-03 |
| 96 | GO:0010024: phytochromobilin biosynthetic process | 2.75E-03 |
| 97 | GO:0009790: embryo development | 2.76E-03 |
| 98 | GO:0000373: Group II intron splicing | 3.68E-03 |
| 99 | GO:0048507: meristem development | 3.68E-03 |
| 100 | GO:0016042: lipid catabolic process | 3.86E-03 |
| 101 | GO:0009451: RNA modification | 4.04E-03 |
| 102 | GO:0009638: phototropism | 4.37E-03 |
| 103 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.37E-03 |
| 104 | GO:0009098: leucine biosynthetic process | 4.37E-03 |
| 105 | GO:0031425: chloroplast RNA processing | 4.37E-03 |
| 106 | GO:0010305: leaf vascular tissue pattern formation | 4.55E-03 |
| 107 | GO:0048586: regulation of long-day photoperiodism, flowering | 4.58E-03 |
| 108 | GO:0031145: anaphase-promoting complex-dependent catabolic process | 4.58E-03 |
| 109 | GO:0033591: response to L-ascorbic acid | 4.58E-03 |
| 110 | GO:0090708: specification of plant organ axis polarity | 4.58E-03 |
| 111 | GO:0010623: programmed cell death involved in cell development | 4.58E-03 |
| 112 | GO:0080055: low-affinity nitrate transport | 4.58E-03 |
| 113 | GO:1902448: positive regulation of shade avoidance | 4.58E-03 |
| 114 | GO:0006696: ergosterol biosynthetic process | 4.58E-03 |
| 115 | GO:0043157: response to cation stress | 4.58E-03 |
| 116 | GO:0071398: cellular response to fatty acid | 4.58E-03 |
| 117 | GO:0006788: heme oxidation | 4.58E-03 |
| 118 | GO:0010022: meristem determinacy | 4.58E-03 |
| 119 | GO:0045165: cell fate commitment | 4.58E-03 |
| 120 | GO:0045910: negative regulation of DNA recombination | 4.58E-03 |
| 121 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.12E-03 |
| 122 | GO:0009641: shade avoidance | 5.12E-03 |
| 123 | GO:0009742: brassinosteroid mediated signaling pathway | 5.32E-03 |
| 124 | GO:0009773: photosynthetic electron transport in photosystem I | 5.94E-03 |
| 125 | GO:0009926: auxin polar transport | 6.33E-03 |
| 126 | GO:0032502: developmental process | 6.52E-03 |
| 127 | GO:0009102: biotin biosynthetic process | 6.71E-03 |
| 128 | GO:0030071: regulation of mitotic metaphase/anaphase transition | 6.71E-03 |
| 129 | GO:0006612: protein targeting to membrane | 6.71E-03 |
| 130 | GO:0051639: actin filament network formation | 6.71E-03 |
| 131 | GO:0032456: endocytic recycling | 6.71E-03 |
| 132 | GO:0034059: response to anoxia | 6.71E-03 |
| 133 | GO:0019048: modulation by virus of host morphology or physiology | 6.71E-03 |
| 134 | GO:0043572: plastid fission | 6.71E-03 |
| 135 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.71E-03 |
| 136 | GO:2001141: regulation of RNA biosynthetic process | 6.71E-03 |
| 137 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 6.71E-03 |
| 138 | GO:0009067: aspartate family amino acid biosynthetic process | 6.71E-03 |
| 139 | GO:0031048: chromatin silencing by small RNA | 6.71E-03 |
| 140 | GO:1990019: protein storage vacuole organization | 6.71E-03 |
| 141 | GO:0010371: regulation of gibberellin biosynthetic process | 6.71E-03 |
| 142 | GO:0010071: root meristem specification | 6.71E-03 |
| 143 | GO:0051513: regulation of monopolar cell growth | 6.71E-03 |
| 144 | GO:0007231: osmosensory signaling pathway | 6.71E-03 |
| 145 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.71E-03 |
| 146 | GO:0010306: rhamnogalacturonan II biosynthetic process | 6.71E-03 |
| 147 | GO:0005983: starch catabolic process | 6.83E-03 |
| 148 | GO:0009828: plant-type cell wall loosening | 7.68E-03 |
| 149 | GO:0010628: positive regulation of gene expression | 7.79E-03 |
| 150 | GO:2000012: regulation of auxin polar transport | 7.79E-03 |
| 151 | GO:0010102: lateral root morphogenesis | 7.79E-03 |
| 152 | GO:0009725: response to hormone | 7.79E-03 |
| 153 | GO:0033500: carbohydrate homeostasis | 9.12E-03 |
| 154 | GO:2000038: regulation of stomatal complex development | 9.12E-03 |
| 155 | GO:0051764: actin crosslink formation | 9.12E-03 |
| 156 | GO:0042274: ribosomal small subunit biogenesis | 9.12E-03 |
| 157 | GO:0009765: photosynthesis, light harvesting | 9.12E-03 |
| 158 | GO:2000306: positive regulation of photomorphogenesis | 9.12E-03 |
| 159 | GO:0009755: hormone-mediated signaling pathway | 9.12E-03 |
| 160 | GO:0051567: histone H3-K9 methylation | 9.12E-03 |
| 161 | GO:0010508: positive regulation of autophagy | 9.12E-03 |
| 162 | GO:0048629: trichome patterning | 9.12E-03 |
| 163 | GO:0008295: spermidine biosynthetic process | 9.12E-03 |
| 164 | GO:0010109: regulation of photosynthesis | 9.12E-03 |
| 165 | GO:0030104: water homeostasis | 9.12E-03 |
| 166 | GO:0070588: calcium ion transmembrane transport | 9.92E-03 |
| 167 | GO:0010438: cellular response to sulfur starvation | 1.18E-02 |
| 168 | GO:0032876: negative regulation of DNA endoreduplication | 1.18E-02 |
| 169 | GO:0010375: stomatal complex patterning | 1.18E-02 |
| 170 | GO:0010236: plastoquinone biosynthetic process | 1.18E-02 |
| 171 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.18E-02 |
| 172 | GO:0048497: maintenance of floral organ identity | 1.18E-02 |
| 173 | GO:0016120: carotene biosynthetic process | 1.18E-02 |
| 174 | GO:1902183: regulation of shoot apical meristem development | 1.18E-02 |
| 175 | GO:0045487: gibberellin catabolic process | 1.18E-02 |
| 176 | GO:0000304: response to singlet oxygen | 1.18E-02 |
| 177 | GO:0080110: sporopollenin biosynthetic process | 1.18E-02 |
| 178 | GO:0051017: actin filament bundle assembly | 1.23E-02 |
| 179 | GO:0005992: trehalose biosynthetic process | 1.23E-02 |
| 180 | GO:1902456: regulation of stomatal opening | 1.47E-02 |
| 181 | GO:0010190: cytochrome b6f complex assembly | 1.47E-02 |
| 182 | GO:0033365: protein localization to organelle | 1.47E-02 |
| 183 | GO:0003006: developmental process involved in reproduction | 1.47E-02 |
| 184 | GO:0016458: gene silencing | 1.47E-02 |
| 185 | GO:0010405: arabinogalactan protein metabolic process | 1.47E-02 |
| 186 | GO:0032973: amino acid export | 1.47E-02 |
| 187 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.47E-02 |
| 188 | GO:0000741: karyogamy | 1.47E-02 |
| 189 | GO:0009913: epidermal cell differentiation | 1.47E-02 |
| 190 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.47E-02 |
| 191 | GO:0010431: seed maturation | 1.51E-02 |
| 192 | GO:0006730: one-carbon metabolic process | 1.65E-02 |
| 193 | GO:2000067: regulation of root morphogenesis | 1.78E-02 |
| 194 | GO:0009612: response to mechanical stimulus | 1.78E-02 |
| 195 | GO:0009082: branched-chain amino acid biosynthetic process | 1.78E-02 |
| 196 | GO:0006458: 'de novo' protein folding | 1.78E-02 |
| 197 | GO:0071333: cellular response to glucose stimulus | 1.78E-02 |
| 198 | GO:0017148: negative regulation of translation | 1.78E-02 |
| 199 | GO:0048280: vesicle fusion with Golgi apparatus | 1.78E-02 |
| 200 | GO:0009099: valine biosynthetic process | 1.78E-02 |
| 201 | GO:0009088: threonine biosynthetic process | 1.78E-02 |
| 202 | GO:0042026: protein refolding | 1.78E-02 |
| 203 | GO:2000033: regulation of seed dormancy process | 1.78E-02 |
| 204 | GO:0080086: stamen filament development | 1.78E-02 |
| 205 | GO:0031930: mitochondria-nucleus signaling pathway | 1.78E-02 |
| 206 | GO:0009648: photoperiodism | 1.78E-02 |
| 207 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.80E-02 |
| 208 | GO:0009686: gibberellin biosynthetic process | 1.80E-02 |
| 209 | GO:0034599: cellular response to oxidative stress | 1.95E-02 |
| 210 | GO:0006955: immune response | 2.12E-02 |
| 211 | GO:0010098: suspensor development | 2.12E-02 |
| 212 | GO:0048528: post-embryonic root development | 2.12E-02 |
| 213 | GO:0009772: photosynthetic electron transport in photosystem II | 2.12E-02 |
| 214 | GO:0043090: amino acid import | 2.12E-02 |
| 215 | GO:0010444: guard mother cell differentiation | 2.12E-02 |
| 216 | GO:0030497: fatty acid elongation | 2.12E-02 |
| 217 | GO:0030307: positive regulation of cell growth | 2.12E-02 |
| 218 | GO:0010050: vegetative phase change | 2.12E-02 |
| 219 | GO:0015693: magnesium ion transport | 2.12E-02 |
| 220 | GO:0010161: red light signaling pathway | 2.12E-02 |
| 221 | GO:0016117: carotenoid biosynthetic process | 2.13E-02 |
| 222 | GO:0006839: mitochondrial transport | 2.18E-02 |
| 223 | GO:0008033: tRNA processing | 2.31E-02 |
| 224 | GO:0010087: phloem or xylem histogenesis | 2.31E-02 |
| 225 | GO:0001522: pseudouridine synthesis | 2.48E-02 |
| 226 | GO:0007155: cell adhesion | 2.48E-02 |
| 227 | GO:0048564: photosystem I assembly | 2.48E-02 |
| 228 | GO:0009850: auxin metabolic process | 2.48E-02 |
| 229 | GO:0009690: cytokinin metabolic process | 2.48E-02 |
| 230 | GO:0006605: protein targeting | 2.48E-02 |
| 231 | GO:0032875: regulation of DNA endoreduplication | 2.48E-02 |
| 232 | GO:0009819: drought recovery | 2.48E-02 |
| 233 | GO:0055075: potassium ion homeostasis | 2.48E-02 |
| 234 | GO:0000105: histidine biosynthetic process | 2.48E-02 |
| 235 | GO:0009231: riboflavin biosynthetic process | 2.48E-02 |
| 236 | GO:0070413: trehalose metabolism in response to stress | 2.48E-02 |
| 237 | GO:0010439: regulation of glucosinolate biosynthetic process | 2.48E-02 |
| 238 | GO:0006662: glycerol ether metabolic process | 2.49E-02 |
| 239 | GO:0010197: polar nucleus fusion | 2.49E-02 |
| 240 | GO:0048544: recognition of pollen | 2.68E-02 |
| 241 | GO:0010099: regulation of photomorphogenesis | 2.85E-02 |
| 242 | GO:0071482: cellular response to light stimulus | 2.85E-02 |
| 243 | GO:0015996: chlorophyll catabolic process | 2.85E-02 |
| 244 | GO:0009097: isoleucine biosynthetic process | 2.85E-02 |
| 245 | GO:0010100: negative regulation of photomorphogenesis | 2.85E-02 |
| 246 | GO:0032544: plastid translation | 2.85E-02 |
| 247 | GO:0007186: G-protein coupled receptor signaling pathway | 2.85E-02 |
| 248 | GO:0009657: plastid organization | 2.85E-02 |
| 249 | GO:0010093: specification of floral organ identity | 2.85E-02 |
| 250 | GO:0000302: response to reactive oxygen species | 3.08E-02 |
| 251 | GO:0006351: transcription, DNA-templated | 3.17E-02 |
| 252 | GO:0006397: mRNA processing | 3.17E-02 |
| 253 | GO:0080144: amino acid homeostasis | 3.24E-02 |
| 254 | GO:2000024: regulation of leaf development | 3.24E-02 |
| 255 | GO:0046916: cellular transition metal ion homeostasis | 3.24E-02 |
| 256 | GO:0006783: heme biosynthetic process | 3.24E-02 |
| 257 | GO:0006098: pentose-phosphate shunt | 3.24E-02 |
| 258 | GO:0000902: cell morphogenesis | 3.24E-02 |
| 259 | GO:0051865: protein autoubiquitination | 3.24E-02 |
| 260 | GO:0016032: viral process | 3.29E-02 |
| 261 | GO:0010583: response to cyclopentenone | 3.29E-02 |
| 262 | GO:0009664: plant-type cell wall organization | 3.39E-02 |
| 263 | GO:0048366: leaf development | 3.50E-02 |
| 264 | GO:1901657: glycosyl compound metabolic process | 3.51E-02 |
| 265 | GO:0010090: trichome morphogenesis | 3.51E-02 |
| 266 | GO:0043067: regulation of programmed cell death | 3.66E-02 |
| 267 | GO:0009086: methionine biosynthetic process | 3.66E-02 |
| 268 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.66E-02 |
| 269 | GO:2000280: regulation of root development | 3.66E-02 |
| 270 | GO:0009299: mRNA transcription | 4.08E-02 |
| 271 | GO:0010629: negative regulation of gene expression | 4.08E-02 |
| 272 | GO:0010162: seed dormancy process | 4.08E-02 |
| 273 | GO:0006896: Golgi to vacuole transport | 4.08E-02 |
| 274 | GO:0030422: production of siRNA involved in RNA interference | 4.08E-02 |
| 275 | GO:0048829: root cap development | 4.08E-02 |
| 276 | GO:0006298: mismatch repair | 4.08E-02 |
| 277 | GO:0016441: posttranscriptional gene silencing | 4.08E-02 |
| 278 | GO:0006949: syncytium formation | 4.08E-02 |
| 279 | GO:0009909: regulation of flower development | 4.20E-02 |
| 280 | GO:0051607: defense response to virus | 4.21E-02 |
| 281 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.52E-02 |
| 282 | GO:0009073: aromatic amino acid family biosynthetic process | 4.52E-02 |
| 283 | GO:0043085: positive regulation of catalytic activity | 4.52E-02 |
| 284 | GO:0006352: DNA-templated transcription, initiation | 4.52E-02 |
| 285 | GO:0006816: calcium ion transport | 4.52E-02 |
| 286 | GO:0048229: gametophyte development | 4.52E-02 |
| 287 | GO:0009682: induced systemic resistance | 4.52E-02 |
| 288 | GO:0006415: translational termination | 4.52E-02 |
| 289 | GO:0007166: cell surface receptor signaling pathway | 4.70E-02 |
| 290 | GO:0010029: regulation of seed germination | 4.71E-02 |
| 291 | GO:0015979: photosynthesis | 4.74E-02 |
| 292 | GO:0007275: multicellular organism development | 4.86E-02 |
| 293 | GO:0005975: carbohydrate metabolic process | 4.86E-02 |
| 294 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 4.98E-02 |
| 295 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.98E-02 |
| 296 | GO:0045037: protein import into chloroplast stroma | 4.98E-02 |