co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0042371: vitamin K biosynthetic process	8.12E-06
4	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	3.99E-05
5	GO:0048281: inflorescence morphogenesis	3.99E-05
6	GO:0010148: transpiration	6.14E-05
7	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	6.14E-05
8	GO:2000122: negative regulation of stomatal complex development	8.58E-05
9	GO:0015976: carbon utilization	8.58E-05
10	GO:0045038: protein import into chloroplast thylakoid membrane	1.12E-04
11	GO:0016123: xanthophyll biosynthetic process	1.12E-04
12	GO:0010375: stomatal complex patterning	1.12E-04
13	GO:0070370: cellular heat acclimation	2.04E-04
14	GO:0010103: stomatal complex morphogenesis	2.04E-04
15	GO:0010374: stomatal complex development	2.04E-04
16	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.04E-04
17	GO:0006605: protein targeting	2.37E-04
18	GO:0001558: regulation of cell growth	2.71E-04
19	GO:0010052: guard cell differentiation	2.71E-04
20	GO:0032544: plastid translation	2.71E-04
21	GO:0009944: polarity specification of adaxial/abaxial axis	6.66E-04
22	GO:0007017: microtubule-based process	7.09E-04
23	GO:0051302: regulation of cell division	7.09E-04
24	GO:0001944: vasculature development	8.44E-04
25	GO:0009306: protein secretion	8.91E-04
26	GO:0016117: carotenoid biosynthetic process	9.38E-04
27	GO:0010027: thylakoid membrane organization	1.50E-03
28	GO:0015995: chlorophyll biosynthetic process	1.67E-03
29	GO:0007568: aging	1.97E-03
30	GO:0030001: metal ion transport	2.29E-03
31	GO:0009965: leaf morphogenesis	2.69E-03
32	GO:0009664: plant-type cell wall organization	2.90E-03
33	GO:0042538: hyperosmotic salinity response	2.90E-03
34	GO:0032259: methylation	1.13E-02
35	GO:0009735: response to cytokinin	1.63E-02
36	GO:0006468: protein phosphorylation	2.50E-02
37	GO:0009414: response to water deprivation	2.83E-02
38	GO:0042742: defense response to bacterium	2.88E-02
39	GO:0009409: response to cold	3.58E-02
40	GO:0009737: response to abscisic acid	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0010291: carotene beta-ring hydroxylase activity	2.19E-05
5	GO:0019199: transmembrane receptor protein kinase activity	8.58E-05
6	GO:0042277: peptide binding	8.58E-05
7	GO:0008312: 7S RNA binding	2.37E-04
8	GO:0004089: carbonate dehydratase activity	4.98E-04
9	GO:0003924: GTPase activity	9.38E-04
10	GO:0005200: structural constituent of cytoskeleton	1.39E-03
11	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.79E-03
12	GO:0005525: GTP binding	2.64E-03
13	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.58E-03
14	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.12E-02
15	GO:0019825: oxygen binding	2.24E-02
16	GO:0005506: iron ion binding	2.85E-02
17	GO:0003824: catalytic activity	3.08E-02
18	GO:0004672: protein kinase activity	3.79E-02
19	GO:0003729: mRNA binding	3.83E-02
20	GO:0020037: heme binding	3.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	2.07E-07
2	GO:0009507: chloroplast	7.94E-06
3	GO:0080085: signal recognition particle, chloroplast targeting	2.19E-05
4	GO:0015630: microtubule cytoskeleton	6.14E-05
5	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.71E-04
6	GO:0009941: chloroplast envelope	3.53E-04
7	GO:0031969: chloroplast membrane	6.48E-04
8	GO:0009579: thylakoid	1.93E-03
9	GO:0009570: chloroplast stroma	3.63E-03
10	GO:0005874: microtubule	8.61E-03
11	GO:0005777: peroxisome	1.92E-02
12	GO:0009534: chloroplast thylakoid	1.99E-02
13	GO:0005840: ribosome	2.98E-02
14	GO:0009506: plasmodesma	4.27E-02