Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010324: membrane invagination0.00E+00
2GO:0010055: atrichoblast differentiation0.00E+00
3GO:1902001: fatty acid transmembrane transport0.00E+00
4GO:0015690: aluminum cation transport0.00E+00
5GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
6GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0046865: terpenoid transport0.00E+00
9GO:0010793: regulation of mRNA export from nucleus0.00E+00
10GO:0018063: cytochrome c-heme linkage0.00E+00
11GO:0051553: flavone biosynthetic process0.00E+00
12GO:0010112: regulation of systemic acquired resistance9.55E-09
13GO:0006952: defense response7.22E-07
14GO:0042742: defense response to bacterium9.07E-06
15GO:1900057: positive regulation of leaf senescence1.35E-05
16GO:0071456: cellular response to hypoxia2.38E-05
17GO:0009617: response to bacterium3.18E-05
18GO:0042391: regulation of membrane potential4.65E-05
19GO:0006979: response to oxidative stress1.92E-04
20GO:0050832: defense response to fungus2.41E-04
21GO:0009643: photosynthetic acclimation2.44E-04
22GO:0009759: indole glucosinolate biosynthetic process2.44E-04
23GO:0009751: response to salicylic acid3.13E-04
24GO:0009611: response to wounding3.55E-04
25GO:1990542: mitochondrial transmembrane transport4.37E-04
26GO:0032107: regulation of response to nutrient levels4.37E-04
27GO:0048508: embryonic meristem development4.37E-04
28GO:0015760: glucose-6-phosphate transport4.37E-04
29GO:0080173: male-female gamete recognition during double fertilization4.37E-04
30GO:0033306: phytol metabolic process4.37E-04
31GO:0009700: indole phytoalexin biosynthetic process4.37E-04
32GO:0010230: alternative respiration4.37E-04
33GO:0050691: regulation of defense response to virus by host4.37E-04
34GO:0034214: protein hexamerization4.37E-04
35GO:0051707: response to other organism5.51E-04
36GO:0010200: response to chitin6.23E-04
37GO:0010120: camalexin biosynthetic process6.43E-04
38GO:0010150: leaf senescence7.50E-04
39GO:0009835: fruit ripening7.70E-04
40GO:0006098: pentose-phosphate shunt7.70E-04
41GO:0015914: phospholipid transport9.44E-04
42GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.44E-04
43GO:0009838: abscission9.44E-04
44GO:0080181: lateral root branching9.44E-04
45GO:0006024: glycosaminoglycan biosynthetic process9.44E-04
46GO:0055088: lipid homeostasis9.44E-04
47GO:0050684: regulation of mRNA processing9.44E-04
48GO:0019521: D-gluconate metabolic process9.44E-04
49GO:0000719: photoreactive repair9.44E-04
50GO:0015908: fatty acid transport9.44E-04
51GO:0044419: interspecies interaction between organisms9.44E-04
52GO:0009945: radial axis specification9.44E-04
53GO:0015712: hexose phosphate transport9.44E-04
54GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine9.44E-04
55GO:0019725: cellular homeostasis9.44E-04
56GO:0051258: protein polymerization9.44E-04
57GO:0015012: heparan sulfate proteoglycan biosynthetic process9.44E-04
58GO:0071668: plant-type cell wall assembly9.44E-04
59GO:0007166: cell surface receptor signaling pathway9.48E-04
60GO:0051607: defense response to virus1.17E-03
61GO:0009684: indoleacetic acid biosynthetic process1.21E-03
62GO:0009620: response to fungus1.29E-03
63GO:0071398: cellular response to fatty acid1.54E-03
64GO:0010186: positive regulation of cellular defense response1.54E-03
65GO:0010476: gibberellin mediated signaling pathway1.54E-03
66GO:0010325: raffinose family oligosaccharide biosynthetic process1.54E-03
67GO:0015692: lead ion transport1.54E-03
68GO:0015695: organic cation transport1.54E-03
69GO:0015714: phosphoenolpyruvate transport1.54E-03
70GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.54E-03
71GO:0080168: abscisic acid transport1.54E-03
72GO:1900055: regulation of leaf senescence1.54E-03
73GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.54E-03
74GO:0006954: inflammatory response1.54E-03
75GO:0032784: regulation of DNA-templated transcription, elongation1.54E-03
76GO:0002230: positive regulation of defense response to virus by host1.54E-03
77GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.54E-03
78GO:0080163: regulation of protein serine/threonine phosphatase activity1.54E-03
79GO:0035436: triose phosphate transmembrane transport1.54E-03
80GO:0010116: positive regulation of abscisic acid biosynthetic process2.22E-03
81GO:0070301: cellular response to hydrogen peroxide2.22E-03
82GO:0002239: response to oomycetes2.22E-03
83GO:0015696: ammonium transport2.22E-03
84GO:0051289: protein homotetramerization2.22E-03
85GO:1902290: positive regulation of defense response to oomycetes2.22E-03
86GO:0000162: tryptophan biosynthetic process2.23E-03
87GO:2000377: regulation of reactive oxygen species metabolic process2.47E-03
88GO:0080147: root hair cell development2.47E-03
89GO:0006874: cellular calcium ion homeostasis2.73E-03
90GO:1901141: regulation of lignin biosynthetic process2.99E-03
91GO:0010109: regulation of photosynthesis2.99E-03
92GO:0060548: negative regulation of cell death2.99E-03
93GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.99E-03
94GO:0048638: regulation of developmental growth2.99E-03
95GO:0048830: adventitious root development2.99E-03
96GO:0072488: ammonium transmembrane transport2.99E-03
97GO:1901002: positive regulation of response to salt stress2.99E-03
98GO:0015713: phosphoglycerate transport2.99E-03
99GO:0006012: galactose metabolic process3.58E-03
100GO:0009693: ethylene biosynthetic process3.58E-03
101GO:0009636: response to toxic substance3.82E-03
102GO:0031365: N-terminal protein amino acid modification3.83E-03
103GO:0034052: positive regulation of plant-type hypersensitive response3.83E-03
104GO:0009164: nucleoside catabolic process3.83E-03
105GO:0031347: regulation of defense response4.20E-03
106GO:0009737: response to abscisic acid4.39E-03
107GO:0010256: endomembrane system organization4.74E-03
108GO:0033365: protein localization to organelle4.74E-03
109GO:0009117: nucleotide metabolic process4.74E-03
110GO:0006574: valine catabolic process4.74E-03
111GO:0009753: response to jasmonic acid5.30E-03
112GO:0048444: floral organ morphogenesis5.72E-03
113GO:0042372: phylloquinone biosynthetic process5.72E-03
114GO:0009942: longitudinal axis specification5.72E-03
115GO:0002229: defense response to oomycetes6.08E-03
116GO:0010193: response to ozone6.08E-03
117GO:1902074: response to salt6.76E-03
118GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.76E-03
119GO:0043090: amino acid import6.76E-03
120GO:1900056: negative regulation of leaf senescence6.76E-03
121GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.76E-03
122GO:0050829: defense response to Gram-negative bacterium6.76E-03
123GO:0030091: protein repair7.86E-03
124GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.86E-03
125GO:0009819: drought recovery7.86E-03
126GO:0009850: auxin metabolic process7.86E-03
127GO:0043068: positive regulation of programmed cell death7.86E-03
128GO:0030968: endoplasmic reticulum unfolded protein response9.03E-03
129GO:0017004: cytochrome complex assembly9.03E-03
130GO:0010208: pollen wall assembly9.03E-03
131GO:0006997: nucleus organization9.03E-03
132GO:0010204: defense response signaling pathway, resistance gene-independent9.03E-03
133GO:0009627: systemic acquired resistance9.86E-03
134GO:0009056: catabolic process1.03E-02
135GO:0007338: single fertilization1.03E-02
136GO:0019432: triglyceride biosynthetic process1.03E-02
137GO:0006950: response to stress1.04E-02
138GO:1900426: positive regulation of defense response to bacterium1.15E-02
139GO:0009638: phototropism1.15E-02
140GO:0090332: stomatal closure1.15E-02
141GO:0048268: clathrin coat assembly1.15E-02
142GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.15E-02
143GO:0008202: steroid metabolic process1.15E-02
144GO:0010311: lateral root formation1.21E-02
145GO:0006468: protein phosphorylation1.23E-02
146GO:0009407: toxin catabolic process1.27E-02
147GO:0009641: shade avoidance1.29E-02
148GO:0010629: negative regulation of gene expression1.29E-02
149GO:0019538: protein metabolic process1.29E-02
150GO:0009870: defense response signaling pathway, resistance gene-dependent1.29E-02
151GO:0006032: chitin catabolic process1.29E-02
152GO:0007568: aging1.34E-02
153GO:0048527: lateral root development1.34E-02
154GO:0048229: gametophyte development1.43E-02
155GO:0040008: regulation of growth1.43E-02
156GO:0019684: photosynthesis, light reaction1.43E-02
157GO:0009682: induced systemic resistance1.43E-02
158GO:0052544: defense response by callose deposition in cell wall1.43E-02
159GO:1903507: negative regulation of nucleic acid-templated transcription1.43E-02
160GO:0000266: mitochondrial fission1.57E-02
161GO:0010102: lateral root morphogenesis1.72E-02
162GO:0009785: blue light signaling pathway1.72E-02
163GO:0006897: endocytosis1.75E-02
164GO:0002237: response to molecule of bacterial origin1.87E-02
165GO:0008152: metabolic process1.93E-02
166GO:0009225: nucleotide-sugar metabolic process2.03E-02
167GO:0042343: indole glucosinolate metabolic process2.03E-02
168GO:0006855: drug transmembrane transport2.21E-02
169GO:0015031: protein transport2.46E-02
170GO:0051302: regulation of cell division2.54E-02
171GO:0007165: signal transduction2.60E-02
172GO:0016998: cell wall macromolecule catabolic process2.71E-02
173GO:0098542: defense response to other organism2.71E-02
174GO:0009269: response to desiccation2.71E-02
175GO:0016226: iron-sulfur cluster assembly2.89E-02
176GO:2000022: regulation of jasmonic acid mediated signaling pathway2.89E-02
177GO:0009625: response to insect3.08E-02
178GO:0009411: response to UV3.08E-02
179GO:0009626: plant-type hypersensitive response3.22E-02
180GO:0080167: response to karrikin3.45E-02
181GO:0070417: cellular response to cold3.46E-02
182GO:0009624: response to nematode3.64E-02
183GO:0000413: protein peptidyl-prolyl isomerization3.66E-02
184GO:0000271: polysaccharide biosynthetic process3.66E-02
185GO:0045489: pectin biosynthetic process3.86E-02
186GO:0006520: cellular amino acid metabolic process3.86E-02
187GO:0009646: response to absence of light4.06E-02
188GO:0006623: protein targeting to vacuole4.27E-02
189GO:0009749: response to glucose4.27E-02
190GO:0071554: cell wall organization or biogenesis4.48E-02
191GO:0000302: response to reactive oxygen species4.48E-02
192GO:0009630: gravitropism4.69E-02
193GO:0045893: positive regulation of transcription, DNA-templated4.74E-02
194GO:0006869: lipid transport4.81E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
3GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
4GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
5GO:0030552: cAMP binding8.08E-06
6GO:0030553: cGMP binding8.08E-06
7GO:0005216: ion channel activity1.60E-05
8GO:0005249: voltage-gated potassium channel activity4.65E-05
9GO:0030551: cyclic nucleotide binding4.65E-05
10GO:0010178: IAA-amino acid conjugate hydrolase activity6.33E-05
11GO:0030247: polysaccharide binding2.11E-04
12GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.27E-04
13GO:0015245: fatty acid transporter activity4.37E-04
14GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.37E-04
15GO:2001227: quercitrin binding4.37E-04
16GO:0019707: protein-cysteine S-acyltransferase activity4.37E-04
17GO:2001147: camalexin binding4.37E-04
18GO:0010331: gibberellin binding9.44E-04
19GO:0015152: glucose-6-phosphate transmembrane transporter activity9.44E-04
20GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity9.44E-04
21GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity9.44E-04
22GO:0032934: sterol binding9.44E-04
23GO:0050736: O-malonyltransferase activity9.44E-04
24GO:0004385: guanylate kinase activity9.44E-04
25GO:0016301: kinase activity1.22E-03
26GO:0071917: triose-phosphate transmembrane transporter activity1.54E-03
27GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.54E-03
28GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.54E-03
29GO:0004806: triglyceride lipase activity1.54E-03
30GO:0032403: protein complex binding1.54E-03
31GO:0004970: ionotropic glutamate receptor activity2.00E-03
32GO:0005217: intracellular ligand-gated ion channel activity2.00E-03
33GO:0017077: oxidative phosphorylation uncoupler activity2.22E-03
34GO:0035529: NADH pyrophosphatase activity2.22E-03
35GO:0015120: phosphoglycerate transmembrane transporter activity2.99E-03
36GO:0004834: tryptophan synthase activity2.99E-03
37GO:0050378: UDP-glucuronate 4-epimerase activity2.99E-03
38GO:0009916: alternative oxidase activity2.99E-03
39GO:0018685: alkane 1-monooxygenase activity3.83E-03
40GO:0005496: steroid binding3.83E-03
41GO:0047631: ADP-ribose diphosphatase activity3.83E-03
42GO:0004499: N,N-dimethylaniline monooxygenase activity3.89E-03
43GO:0016787: hydrolase activity4.45E-03
44GO:0008519: ammonium transmembrane transporter activity4.74E-03
45GO:0000210: NAD+ diphosphatase activity4.74E-03
46GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.72E-03
47GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.72E-03
48GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides5.72E-03
49GO:0102391: decanoate--CoA ligase activity5.72E-03
50GO:0005261: cation channel activity5.72E-03
51GO:0004144: diacylglycerol O-acyltransferase activity5.72E-03
52GO:0003978: UDP-glucose 4-epimerase activity5.72E-03
53GO:0004656: procollagen-proline 4-dioxygenase activity5.72E-03
54GO:0016757: transferase activity, transferring glycosyl groups6.02E-03
55GO:0004467: long-chain fatty acid-CoA ligase activity6.76E-03
56GO:0008235: metalloexopeptidase activity6.76E-03
57GO:0008320: protein transmembrane transporter activity6.76E-03
58GO:0043295: glutathione binding6.76E-03
59GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity7.84E-03
60GO:0008237: metallopeptidase activity7.84E-03
61GO:0004714: transmembrane receptor protein tyrosine kinase activity7.86E-03
62GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity7.86E-03
63GO:0004034: aldose 1-epimerase activity7.86E-03
64GO:0005544: calcium-dependent phospholipid binding7.86E-03
65GO:0004033: aldo-keto reductase (NADP) activity7.86E-03
66GO:0005516: calmodulin binding8.78E-03
67GO:0008142: oxysterol binding9.03E-03
68GO:0004497: monooxygenase activity9.27E-03
69GO:0016758: transferase activity, transferring hexosyl groups9.74E-03
70GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.03E-02
71GO:0071949: FAD binding1.03E-02
72GO:0047617: acyl-CoA hydrolase activity1.15E-02
73GO:0004568: chitinase activity1.29E-02
74GO:0005545: 1-phosphatidylinositol binding1.29E-02
75GO:0015020: glucuronosyltransferase activity1.29E-02
76GO:0004864: protein phosphatase inhibitor activity1.29E-02
77GO:0005509: calcium ion binding1.34E-02
78GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.37E-02
79GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.39E-02
80GO:0004177: aminopeptidase activity1.43E-02
81GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.47E-02
82GO:0004674: protein serine/threonine kinase activity1.60E-02
83GO:0050661: NADP binding1.67E-02
84GO:0005315: inorganic phosphate transmembrane transporter activity1.72E-02
85GO:0008194: UDP-glycosyltransferase activity1.75E-02
86GO:0043565: sequence-specific DNA binding1.77E-02
87GO:0004364: glutathione transferase activity1.82E-02
88GO:0003712: transcription cofactor activity2.03E-02
89GO:0051287: NAD binding2.30E-02
90GO:0019825: oxygen binding2.33E-02
91GO:0051536: iron-sulfur cluster binding2.36E-02
92GO:0031418: L-ascorbic acid binding2.36E-02
93GO:0001046: core promoter sequence-specific DNA binding2.36E-02
94GO:0003714: transcription corepressor activity2.36E-02
95GO:0046872: metal ion binding2.65E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity2.71E-02
97GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.89E-02
98GO:0043531: ADP binding2.96E-02
99GO:0008810: cellulase activity3.08E-02
100GO:0080043: quercetin 3-O-glucosyltransferase activity3.32E-02
101GO:0080044: quercetin 7-O-glucosyltransferase activity3.32E-02
102GO:0020037: heme binding3.66E-02
103GO:0016746: transferase activity, transferring acyl groups3.74E-02
104GO:0005199: structural constituent of cell wall3.86E-02
105GO:0030276: clathrin binding3.86E-02
106GO:0016853: isomerase activity4.06E-02
107GO:0050662: coenzyme binding4.06E-02
108GO:0005506: iron ion binding4.07E-02
109GO:0042803: protein homodimerization activity4.55E-02
110GO:0004871: signal transducer activity4.55E-02
111GO:0004197: cysteine-type endopeptidase activity4.69E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0016021: integral component of membrane2.17E-08
3GO:0005794: Golgi apparatus2.65E-06
4GO:0005886: plasma membrane2.07E-05
5GO:0005802: trans-Golgi network8.47E-05
6GO:0045252: oxoglutarate dehydrogenase complex4.37E-04
7GO:0000138: Golgi trans cisterna4.37E-04
8GO:0005768: endosome4.70E-04
9GO:0005901: caveola9.44E-04
10GO:0009530: primary cell wall1.54E-03
11GO:0005789: endoplasmic reticulum membrane1.87E-03
12GO:0030658: transport vesicle membrane2.22E-03
13GO:0005887: integral component of plasma membrane2.32E-03
14GO:0000813: ESCRT I complex3.83E-03
15GO:0000164: protein phosphatase type 1 complex3.83E-03
16GO:0046658: anchored component of plasma membrane5.27E-03
17GO:0031965: nuclear membrane5.68E-03
18GO:0017119: Golgi transport complex1.29E-02
19GO:0005769: early endosome2.20E-02
20GO:0070469: respiratory chain2.54E-02
21GO:0005905: clathrin-coated pit2.71E-02
22GO:0005741: mitochondrial outer membrane2.71E-02
23GO:0030136: clathrin-coated vesicle3.46E-02
24GO:0005783: endoplasmic reticulum3.86E-02
25GO:0019898: extrinsic component of membrane4.27E-02
26GO:0009504: cell plate4.27E-02
27GO:0005777: peroxisome4.74E-02
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Gene type



Gene DE type