co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
2	GO:0052386: cell wall thickening	0.00E+00
3	GO:0010401: pectic galactan metabolic process	0.00E+00
4	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
5	GO:0080149: sucrose induced translational repression	0.00E+00
6	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
7	GO:0006983: ER overload response	0.00E+00
8	GO:1902009: positive regulation of toxin transport	0.00E+00
9	GO:0051553: flavone biosynthetic process	0.00E+00
10	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
11	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
12	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
13	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
14	GO:0005993: trehalose catabolic process	0.00E+00
15	GO:0015012: heparan sulfate proteoglycan biosynthetic process	6.33E-06
16	GO:0006024: glycosaminoglycan biosynthetic process	6.33E-06
17	GO:0006605: protein targeting	1.38E-05
18	GO:1901002: positive regulation of response to salt stress	8.61E-05
19	GO:0015031: protein transport	1.93E-04
20	GO:0043182: vacuolar sequestering of sodium ion	3.75E-04
21	GO:0050691: regulation of defense response to virus by host	3.75E-04
22	GO:0016337: single organismal cell-cell adhesion	3.75E-04
23	GO:0000077: DNA damage checkpoint	3.75E-04
24	GO:0042350: GDP-L-fucose biosynthetic process	3.75E-04
25	GO:1990641: response to iron ion starvation	3.75E-04
26	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.75E-04
27	GO:0051707: response to other organism	3.88E-04
28	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.22E-04
29	GO:0006102: isocitrate metabolic process	4.22E-04
30	GO:0010112: regulation of systemic acquired resistance	6.19E-04
31	GO:0008202: steroid metabolic process	7.31E-04
32	GO:0040020: regulation of meiotic nuclear division	8.15E-04
33	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	8.15E-04
34	GO:0006101: citrate metabolic process	8.15E-04
35	GO:0043066: negative regulation of apoptotic process	8.15E-04
36	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	8.15E-04
37	GO:0080183: response to photooxidative stress	8.15E-04
38	GO:0010155: regulation of proton transport	8.15E-04
39	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	8.15E-04
40	GO:0052541: plant-type cell wall cellulose metabolic process	8.15E-04
41	GO:0042853: L-alanine catabolic process	8.15E-04
42	GO:0051607: defense response to virus	8.82E-04
43	GO:0042742: defense response to bacterium	1.08E-03
44	GO:0045037: protein import into chloroplast stroma	1.12E-03
45	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.32E-03
46	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.32E-03
47	GO:0071398: cellular response to fatty acid	1.32E-03
48	GO:0006065: UDP-glucuronate biosynthetic process	1.32E-03
49	GO:0015783: GDP-fucose transport	1.32E-03
50	GO:0032504: multicellular organism reproduction	1.32E-03
51	GO:0009410: response to xenobiotic stimulus	1.32E-03
52	GO:0052546: cell wall pectin metabolic process	1.32E-03
53	GO:0002237: response to molecule of bacterial origin	1.43E-03
54	GO:0016192: vesicle-mediated transport	1.72E-03
55	GO:0006099: tricarboxylic acid cycle	1.89E-03
56	GO:0009226: nucleotide-sugar biosynthetic process	1.91E-03
57	GO:0071323: cellular response to chitin	1.91E-03
58	GO:0080024: indolebutyric acid metabolic process	1.91E-03
59	GO:0001676: long-chain fatty acid metabolic process	1.91E-03
60	GO:0055089: fatty acid homeostasis	1.91E-03
61	GO:0070301: cellular response to hydrogen peroxide	1.91E-03
62	GO:0051639: actin filament network formation	1.91E-03
63	GO:0002239: response to oomycetes	1.91E-03
64	GO:0072334: UDP-galactose transmembrane transport	1.91E-03
65	GO:0030150: protein import into mitochondrial matrix	1.97E-03
66	GO:0007275: multicellular organism development	1.98E-03
67	GO:0006631: fatty acid metabolic process	2.22E-03
68	GO:0006886: intracellular protein transport	2.29E-03
69	GO:0009738: abscisic acid-activated signaling pathway	2.35E-03
70	GO:0006621: protein retention in ER lumen	2.56E-03
71	GO:0015867: ATP transport	2.56E-03
72	GO:0051764: actin crosslink formation	2.56E-03
73	GO:0006097: glyoxylate cycle	3.28E-03
74	GO:0009229: thiamine diphosphate biosynthetic process	3.28E-03
75	GO:0006665: sphingolipid metabolic process	3.28E-03
76	GO:0047484: regulation of response to osmotic stress	4.05E-03
77	GO:1900425: negative regulation of defense response to bacterium	4.05E-03
78	GO:0009228: thiamine biosynthetic process	4.05E-03
79	GO:0006014: D-ribose metabolic process	4.05E-03
80	GO:0015866: ADP transport	4.05E-03
81	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	4.05E-03
82	GO:0010256: endomembrane system organization	4.05E-03
83	GO:0006623: protein targeting to vacuole	4.53E-03
84	GO:0017148: negative regulation of translation	4.88E-03
85	GO:0009620: response to fungus	5.03E-03
86	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.77E-03
87	GO:2000014: regulation of endosperm development	5.77E-03
88	GO:0006333: chromatin assembly or disassembly	5.77E-03
89	GO:0010044: response to aluminum ion	5.77E-03
90	GO:0009850: auxin metabolic process	6.70E-03
91	GO:0045010: actin nucleation	6.70E-03
92	GO:0031540: regulation of anthocyanin biosynthetic process	6.70E-03
93	GO:0016559: peroxisome fission	6.70E-03
94	GO:0009816: defense response to bacterium, incompatible interaction	7.42E-03
95	GO:0010417: glucuronoxylan biosynthetic process	7.69E-03
96	GO:0030968: endoplasmic reticulum unfolded protein response	7.69E-03
97	GO:0010332: response to gamma radiation	8.73E-03
98	GO:0000902: cell morphogenesis	8.73E-03
99	GO:0015780: nucleotide-sugar transport	8.73E-03
100	GO:0009835: fruit ripening	8.73E-03
101	GO:0007338: single fertilization	8.73E-03
102	GO:0009086: methionine biosynthetic process	9.82E-03
103	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	9.82E-03
104	GO:0090332: stomatal closure	9.82E-03
105	GO:0000103: sulfate assimilation	1.10E-02
106	GO:0009688: abscisic acid biosynthetic process	1.10E-02
107	GO:0043069: negative regulation of programmed cell death	1.10E-02
108	GO:0051555: flavonol biosynthetic process	1.10E-02
109	GO:0010150: leaf senescence	1.14E-02
110	GO:0009751: response to salicylic acid	1.16E-02
111	GO:0009408: response to heat	1.18E-02
112	GO:0006913: nucleocytoplasmic transport	1.21E-02
113	GO:0019684: photosynthesis, light reaction	1.21E-02
114	GO:0009089: lysine biosynthetic process via diaminopimelate	1.21E-02
115	GO:0000038: very long-chain fatty acid metabolic process	1.21E-02
116	GO:0000266: mitochondrial fission	1.34E-02
117	GO:0009617: response to bacterium	1.42E-02
118	GO:2000012: regulation of auxin polar transport	1.46E-02
119	GO:0010102: lateral root morphogenesis	1.46E-02
120	GO:0030036: actin cytoskeleton organization	1.46E-02
121	GO:0018107: peptidyl-threonine phosphorylation	1.46E-02
122	GO:0007015: actin filament organization	1.59E-02
123	GO:0034605: cellular response to heat	1.59E-02
124	GO:0090351: seedling development	1.73E-02
125	GO:0070588: calcium ion transmembrane transport	1.73E-02
126	GO:0034976: response to endoplasmic reticulum stress	1.87E-02
127	GO:0006636: unsaturated fatty acid biosynthetic process	1.87E-02
128	GO:0000162: tryptophan biosynthetic process	1.87E-02
129	GO:0009846: pollen germination	1.89E-02
130	GO:0000027: ribosomal large subunit assembly	2.01E-02
131	GO:0009863: salicylic acid mediated signaling pathway	2.01E-02
132	GO:0080147: root hair cell development	2.01E-02
133	GO:0051017: actin filament bundle assembly	2.01E-02
134	GO:0006289: nucleotide-excision repair	2.01E-02
135	GO:0006486: protein glycosylation	2.03E-02
136	GO:0010224: response to UV-B	2.11E-02
137	GO:0006334: nucleosome assembly	2.30E-02
138	GO:0009269: response to desiccation	2.30E-02
139	GO:0009814: defense response, incompatible interaction	2.46E-02
140	GO:0031348: negative regulation of defense response	2.46E-02
141	GO:0071456: cellular response to hypoxia	2.46E-02
142	GO:0009693: ethylene biosynthetic process	2.62E-02
143	GO:0009411: response to UV	2.62E-02
144	GO:0010051: xylem and phloem pattern formation	3.11E-02
145	GO:0010087: phloem or xylem histogenesis	3.11E-02
146	GO:0010118: stomatal movement	3.11E-02
147	GO:0009960: endosperm development	3.28E-02
148	GO:0045489: pectin biosynthetic process	3.28E-02
149	GO:0006662: glycerol ether metabolic process	3.28E-02
150	GO:0010197: polar nucleus fusion	3.28E-02
151	GO:0010182: sugar mediated signaling pathway	3.28E-02
152	GO:0019252: starch biosynthetic process	3.63E-02
153	GO:0071554: cell wall organization or biogenesis	3.81E-02
154	GO:0002229: defense response to oomycetes	3.81E-02
155	GO:0010193: response to ozone	3.81E-02
156	GO:0006891: intra-Golgi vesicle-mediated transport	3.81E-02
157	GO:0006635: fatty acid beta-oxidation	3.81E-02
158	GO:0016032: viral process	3.99E-02
159	GO:0032502: developmental process	3.99E-02
160	GO:0006457: protein folding	4.06E-02
161	GO:0030163: protein catabolic process	4.17E-02
162	GO:0009567: double fertilization forming a zygote and endosperm	4.36E-02
163	GO:0006633: fatty acid biosynthetic process	4.54E-02
164	GO:0071805: potassium ion transmembrane transport	4.55E-02
165	GO:0001666: response to hypoxia	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
3	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
4	GO:0050334: thiaminase activity	0.00E+00
5	GO:0005046: KDEL sequence binding	0.00E+00
6	GO:0034338: short-chain carboxylesterase activity	0.00E+00
7	GO:0033759: flavone synthase activity	0.00E+00
8	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
9	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
10	GO:0031418: L-ascorbic acid binding	1.77E-04
11	GO:0102391: decanoate--CoA ligase activity	2.60E-04
12	GO:0004656: procollagen-proline 4-dioxygenase activity	2.60E-04
13	GO:0008320: protein transmembrane transporter activity	3.37E-04
14	GO:0004467: long-chain fatty acid-CoA ligase activity	3.37E-04
15	GO:0030942: endoplasmic reticulum signal peptide binding	3.75E-04
16	GO:0047150: betaine-homocysteine S-methyltransferase activity	3.75E-04
17	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	3.75E-04
18	GO:0009000: selenocysteine lyase activity	3.75E-04
19	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.75E-04
20	GO:0016920: pyroglutamyl-peptidase activity	3.75E-04
21	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.75E-04
22	GO:0050577: GDP-L-fucose synthase activity	3.75E-04
23	GO:0015927: trehalase activity	3.75E-04
24	GO:0008142: oxysterol binding	5.17E-04
25	GO:0000774: adenyl-nucleotide exchange factor activity	8.15E-04
26	GO:0032934: sterol binding	8.15E-04
27	GO:0050736: O-malonyltransferase activity	8.15E-04
28	GO:0015036: disulfide oxidoreductase activity	8.15E-04
29	GO:0003994: aconitate hydratase activity	8.15E-04
30	GO:0005457: GDP-fucose transmembrane transporter activity	1.32E-03
31	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.32E-03
32	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	1.32E-03
33	GO:0030170: pyridoxal phosphate binding	1.73E-03
34	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.78E-03
35	GO:0035529: NADH pyrophosphatase activity	1.91E-03
36	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.91E-03
37	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.91E-03
38	GO:0030527: structural constituent of chromatin	1.91E-03
39	GO:0005460: UDP-glucose transmembrane transporter activity	1.91E-03
40	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.91E-03
41	GO:0035251: UDP-glucosyltransferase activity	2.39E-03
42	GO:0004834: tryptophan synthase activity	2.56E-03
43	GO:0046923: ER retention sequence binding	2.56E-03
44	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	3.28E-03
45	GO:0004623: phospholipase A2 activity	3.28E-03
46	GO:0047631: ADP-ribose diphosphatase activity	3.28E-03
47	GO:0030151: molybdenum ion binding	3.28E-03
48	GO:0005459: UDP-galactose transmembrane transporter activity	3.28E-03
49	GO:0000210: NAD+ diphosphatase activity	4.05E-03
50	GO:0050662: coenzyme binding	4.22E-03
51	GO:0004747: ribokinase activity	4.88E-03
52	GO:0005347: ATP transmembrane transporter activity	4.88E-03
53	GO:0015217: ADP transmembrane transporter activity	4.88E-03
54	GO:0046872: metal ion binding	6.01E-03
55	GO:0047893: flavonol 3-O-glucosyltransferase activity	6.70E-03
56	GO:0052747: sinapyl alcohol dehydrogenase activity	6.70E-03
57	GO:0004869: cysteine-type endopeptidase inhibitor activity	6.70E-03
58	GO:0008865: fructokinase activity	6.70E-03
59	GO:0008312: 7S RNA binding	6.70E-03
60	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	7.69E-03
61	GO:0004630: phospholipase D activity	7.69E-03
62	GO:0004806: triglyceride lipase activity	8.27E-03
63	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.73E-03
64	GO:0030955: potassium ion binding	9.82E-03
65	GO:0004743: pyruvate kinase activity	9.82E-03
66	GO:0004864: protein phosphatase inhibitor activity	1.10E-02
67	GO:0030234: enzyme regulator activity	1.10E-02
68	GO:0016740: transferase activity	1.21E-02
69	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.34E-02
70	GO:0015198: oligopeptide transporter activity	1.34E-02
71	GO:0005388: calcium-transporting ATPase activity	1.46E-02
72	GO:0004022: alcohol dehydrogenase (NAD) activity	1.46E-02
73	GO:0031072: heat shock protein binding	1.46E-02
74	GO:0008061: chitin binding	1.73E-02
75	GO:0003712: transcription cofactor activity	1.73E-02
76	GO:0051287: NAD binding	1.83E-02
77	GO:0003682: chromatin binding	2.12E-02
78	GO:0015079: potassium ion transmembrane transporter activity	2.15E-02
79	GO:0051087: chaperone binding	2.15E-02
80	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.46E-02
81	GO:0005509: calcium ion binding	2.50E-02
82	GO:0022857: transmembrane transporter activity	2.73E-02
83	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.78E-02
84	GO:0051082: unfolded protein binding	2.90E-02
85	GO:0047134: protein-disulfide reductase activity	2.94E-02
86	GO:0005102: receptor binding	2.94E-02
87	GO:0015035: protein disulfide oxidoreductase activity	2.98E-02
88	GO:0042803: protein homodimerization activity	3.44E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	3.45E-02
90	GO:0016853: isomerase activity	3.45E-02
91	GO:0016758: transferase activity, transferring hexosyl groups	3.53E-02
92	GO:0004872: receptor activity	3.63E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.17E-02
94	GO:0051015: actin filament binding	4.17E-02
95	GO:0008565: protein transporter activity	4.33E-02
96	GO:0008483: transaminase activity	4.55E-02
97	GO:0008237: metallopeptidase activity	4.55E-02
98	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.65E-02
99	GO:0043565: sequence-specific DNA binding	4.66E-02
100	GO:0016413: O-acetyltransferase activity	4.75E-02
101	GO:0015297: antiporter activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005789: endoplasmic reticulum membrane	6.92E-07
2	GO:0005783: endoplasmic reticulum	1.32E-04
3	GO:0005801: cis-Golgi network	2.60E-04
4	GO:0005794: Golgi apparatus	2.72E-04
5	GO:0016021: integral component of membrane	2.87E-04
6	GO:0045252: oxoglutarate dehydrogenase complex	3.75E-04
7	GO:0001405: presequence translocase-associated import motor	3.75E-04
8	GO:0030665: clathrin-coated vesicle membrane	7.31E-04
9	GO:0031314: extrinsic component of mitochondrial inner membrane	8.15E-04
10	GO:0030134: ER to Golgi transport vesicle	8.15E-04
11	GO:0017119: Golgi transport complex	8.52E-04
12	GO:0005795: Golgi stack	1.60E-03
13	GO:0032432: actin filament bundle	1.91E-03
14	GO:0030658: transport vesicle membrane	1.91E-03
15	GO:0031902: late endosome membrane	2.22E-03
16	GO:0000164: protein phosphatase type 1 complex	3.28E-03
17	GO:0005885: Arp2/3 protein complex	4.88E-03
18	GO:0030173: integral component of Golgi membrane	4.88E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.77E-03
20	GO:0000139: Golgi membrane	6.45E-03
21	GO:0005779: integral component of peroxisomal membrane	7.69E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.69E-03
23	GO:0005623: cell	7.79E-03
24	GO:0005829: cytosol	7.94E-03
25	GO:0005774: vacuolar membrane	8.35E-03
26	GO:0008540: proteasome regulatory particle, base subcomplex	9.82E-03
27	GO:0005884: actin filament	1.21E-02
28	GO:0030176: integral component of endoplasmic reticulum membrane	1.73E-02
29	GO:0005622: intracellular	2.30E-02
30	GO:0005741: mitochondrial outer membrane	2.30E-02
31	GO:0031410: cytoplasmic vesicle	2.46E-02
32	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.78E-02
33	GO:0005777: peroxisome	3.41E-02
34	GO:0009543: chloroplast thylakoid lumen	3.62E-02
35	GO:0019898: extrinsic component of membrane	3.63E-02
36	GO:0005886: plasma membrane	3.66E-02
37	GO:0005743: mitochondrial inner membrane	3.84E-02
38	GO:0016592: mediator complex	3.99E-02
39	GO:0000785: chromatin	3.99E-02
40	GO:0032580: Golgi cisterna membrane	4.36E-02
41	GO:0005778: peroxisomal membrane	4.55E-02
42	GO:0005737: cytoplasm	4.66E-02