GO Enrichment Analysis of Co-expressed Genes with
AT4G39235
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0009773: photosynthetic electron transport in photosystem I | 9.29E-08 |
| 3 | GO:0010196: nonphotochemical quenching | 1.04E-06 |
| 4 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.22E-06 |
| 5 | GO:0015979: photosynthesis | 1.96E-06 |
| 6 | GO:0090391: granum assembly | 4.55E-06 |
| 7 | GO:0006000: fructose metabolic process | 4.55E-06 |
| 8 | GO:0005983: starch catabolic process | 1.01E-05 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 1.32E-05 |
| 10 | GO:0055114: oxidation-reduction process | 1.03E-04 |
| 11 | GO:0009642: response to light intensity | 1.15E-04 |
| 12 | GO:0006002: fructose 6-phosphate metabolic process | 1.44E-04 |
| 13 | GO:0009090: homoserine biosynthetic process | 1.58E-04 |
| 14 | GO:0034337: RNA folding | 1.58E-04 |
| 15 | GO:0000023: maltose metabolic process | 1.58E-04 |
| 16 | GO:0000025: maltose catabolic process | 1.58E-04 |
| 17 | GO:0010206: photosystem II repair | 1.77E-04 |
| 18 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.91E-04 |
| 19 | GO:0043085: positive regulation of catalytic activity | 2.91E-04 |
| 20 | GO:0005976: polysaccharide metabolic process | 3.60E-04 |
| 21 | GO:0010353: response to trehalose | 3.60E-04 |
| 22 | GO:0006898: receptor-mediated endocytosis | 3.60E-04 |
| 23 | GO:0006094: gluconeogenesis | 3.82E-04 |
| 24 | GO:0005986: sucrose biosynthetic process | 3.82E-04 |
| 25 | GO:0010207: photosystem II assembly | 4.31E-04 |
| 26 | GO:0006518: peptide metabolic process | 5.89E-04 |
| 27 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.55E-04 |
| 28 | GO:0061077: chaperone-mediated protein folding | 7.18E-04 |
| 29 | GO:0006364: rRNA processing | 7.52E-04 |
| 30 | GO:0009067: aspartate family amino acid biosynthetic process | 8.43E-04 |
| 31 | GO:0006020: inositol metabolic process | 8.43E-04 |
| 32 | GO:0071484: cellular response to light intensity | 8.43E-04 |
| 33 | GO:0006021: inositol biosynthetic process | 1.12E-03 |
| 34 | GO:0071483: cellular response to blue light | 1.12E-03 |
| 35 | GO:0006109: regulation of carbohydrate metabolic process | 1.12E-03 |
| 36 | GO:0045727: positive regulation of translation | 1.12E-03 |
| 37 | GO:0015994: chlorophyll metabolic process | 1.12E-03 |
| 38 | GO:0006662: glycerol ether metabolic process | 1.15E-03 |
| 39 | GO:0045454: cell redox homeostasis | 1.28E-03 |
| 40 | GO:0009904: chloroplast accumulation movement | 1.41E-03 |
| 41 | GO:0006656: phosphatidylcholine biosynthetic process | 1.41E-03 |
| 42 | GO:0032259: methylation | 1.64E-03 |
| 43 | GO:1902456: regulation of stomatal opening | 1.74E-03 |
| 44 | GO:0010190: cytochrome b6f complex assembly | 1.74E-03 |
| 45 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.74E-03 |
| 46 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.74E-03 |
| 47 | GO:0046855: inositol phosphate dephosphorylation | 1.74E-03 |
| 48 | GO:0010027: thylakoid membrane organization | 2.03E-03 |
| 49 | GO:0009903: chloroplast avoidance movement | 2.09E-03 |
| 50 | GO:0009088: threonine biosynthetic process | 2.09E-03 |
| 51 | GO:1901259: chloroplast rRNA processing | 2.09E-03 |
| 52 | GO:0009610: response to symbiotic fungus | 2.45E-03 |
| 53 | GO:0009772: photosynthetic electron transport in photosystem II | 2.45E-03 |
| 54 | GO:0016311: dephosphorylation | 2.51E-03 |
| 55 | GO:0030091: protein repair | 2.84E-03 |
| 56 | GO:0009631: cold acclimation | 3.04E-03 |
| 57 | GO:0032544: plastid translation | 3.25E-03 |
| 58 | GO:0015996: chlorophyll catabolic process | 3.25E-03 |
| 59 | GO:0034599: cellular response to oxidative stress | 3.48E-03 |
| 60 | GO:0006754: ATP biosynthetic process | 3.67E-03 |
| 61 | GO:0042254: ribosome biogenesis | 4.12E-03 |
| 62 | GO:0009086: methionine biosynthetic process | 4.12E-03 |
| 63 | GO:0009641: shade avoidance | 4.58E-03 |
| 64 | GO:0000272: polysaccharide catabolic process | 5.05E-03 |
| 65 | GO:0009750: response to fructose | 5.05E-03 |
| 66 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.05E-03 |
| 67 | GO:0006790: sulfur compound metabolic process | 5.55E-03 |
| 68 | GO:0018107: peptidyl-threonine phosphorylation | 6.06E-03 |
| 69 | GO:0006810: transport | 6.36E-03 |
| 70 | GO:0007015: actin filament organization | 6.59E-03 |
| 71 | GO:0010223: secondary shoot formation | 6.59E-03 |
| 72 | GO:0009266: response to temperature stimulus | 6.59E-03 |
| 73 | GO:0019253: reductive pentose-phosphate cycle | 6.59E-03 |
| 74 | GO:0046854: phosphatidylinositol phosphorylation | 7.13E-03 |
| 75 | GO:0005985: sucrose metabolic process | 7.13E-03 |
| 76 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.69E-03 |
| 77 | GO:0016114: terpenoid biosynthetic process | 9.46E-03 |
| 78 | GO:0016226: iron-sulfur cluster assembly | 1.01E-02 |
| 79 | GO:0019748: secondary metabolic process | 1.01E-02 |
| 80 | GO:0070417: cellular response to cold | 1.20E-02 |
| 81 | GO:0006979: response to oxidative stress | 1.24E-02 |
| 82 | GO:0042631: cellular response to water deprivation | 1.27E-02 |
| 83 | GO:0006633: fatty acid biosynthetic process | 1.30E-02 |
| 84 | GO:0009741: response to brassinosteroid | 1.34E-02 |
| 85 | GO:0015986: ATP synthesis coupled proton transport | 1.41E-02 |
| 86 | GO:0009735: response to cytokinin | 1.60E-02 |
| 87 | GO:1901657: glycosyl compound metabolic process | 1.71E-02 |
| 88 | GO:0009409: response to cold | 1.93E-02 |
| 89 | GO:0045893: positive regulation of transcription, DNA-templated | 2.14E-02 |
| 90 | GO:0009658: chloroplast organization | 2.21E-02 |
| 91 | GO:0018298: protein-chromophore linkage | 2.44E-02 |
| 92 | GO:0009813: flavonoid biosynthetic process | 2.53E-02 |
| 93 | GO:0010218: response to far red light | 2.62E-02 |
| 94 | GO:0007568: aging | 2.71E-02 |
| 95 | GO:0009637: response to blue light | 2.89E-02 |
| 96 | GO:0010114: response to red light | 3.46E-02 |
| 97 | GO:0051707: response to other organism | 3.46E-02 |
| 98 | GO:0006629: lipid metabolic process | 4.03E-02 |
| 99 | GO:0006812: cation transport | 4.07E-02 |
| 100 | GO:0010224: response to UV-B | 4.38E-02 |
| 101 | GO:0043086: negative regulation of catalytic activity | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 2 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 4 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 5 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 8 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 9 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 10 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 11 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 12 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 13 | GO:0010297: heteropolysaccharide binding | 1.22E-06 |
| 14 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.22E-06 |
| 15 | GO:0019843: rRNA binding | 1.85E-05 |
| 16 | GO:0005528: FK506 binding | 2.71E-05 |
| 17 | GO:0004134: 4-alpha-glucanotransferase activity | 1.58E-04 |
| 18 | GO:0034256: chlorophyll(ide) b reductase activity | 1.58E-04 |
| 19 | GO:0045486: naringenin 3-dioxygenase activity | 1.58E-04 |
| 20 | GO:0035671: enone reductase activity | 1.58E-04 |
| 21 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.58E-04 |
| 22 | GO:0080079: cellobiose glucosidase activity | 1.58E-04 |
| 23 | GO:0050521: alpha-glucan, water dikinase activity | 1.58E-04 |
| 24 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.58E-04 |
| 25 | GO:0008047: enzyme activator activity | 2.50E-04 |
| 26 | GO:0018708: thiol S-methyltransferase activity | 3.60E-04 |
| 27 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.60E-04 |
| 28 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.60E-04 |
| 29 | GO:0047746: chlorophyllase activity | 3.60E-04 |
| 30 | GO:0042389: omega-3 fatty acid desaturase activity | 3.60E-04 |
| 31 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.60E-04 |
| 32 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.60E-04 |
| 33 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.60E-04 |
| 34 | GO:0004412: homoserine dehydrogenase activity | 3.60E-04 |
| 35 | GO:0008967: phosphoglycolate phosphatase activity | 3.60E-04 |
| 36 | GO:0031409: pigment binding | 5.37E-04 |
| 37 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.70E-04 |
| 38 | GO:0070402: NADPH binding | 5.89E-04 |
| 39 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.89E-04 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.28E-04 |
| 41 | GO:0004072: aspartate kinase activity | 8.43E-04 |
| 42 | GO:0019201: nucleotide kinase activity | 8.43E-04 |
| 43 | GO:0016851: magnesium chelatase activity | 8.43E-04 |
| 44 | GO:0047134: protein-disulfide reductase activity | 9.96E-04 |
| 45 | GO:0015035: protein disulfide oxidoreductase activity | 1.20E-03 |
| 46 | GO:0004791: thioredoxin-disulfide reductase activity | 1.24E-03 |
| 47 | GO:0016491: oxidoreductase activity | 1.43E-03 |
| 48 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.61E-03 |
| 49 | GO:0008200: ion channel inhibitor activity | 1.74E-03 |
| 50 | GO:2001070: starch binding | 1.74E-03 |
| 51 | GO:0004017: adenylate kinase activity | 2.09E-03 |
| 52 | GO:0004602: glutathione peroxidase activity | 2.09E-03 |
| 53 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.09E-03 |
| 54 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.09E-03 |
| 55 | GO:0016168: chlorophyll binding | 2.14E-03 |
| 56 | GO:0004033: aldo-keto reductase (NADP) activity | 2.84E-03 |
| 57 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.25E-03 |
| 58 | GO:0003993: acid phosphatase activity | 3.48E-03 |
| 59 | GO:0016787: hydrolase activity | 3.75E-03 |
| 60 | GO:0008168: methyltransferase activity | 3.83E-03 |
| 61 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 4.12E-03 |
| 62 | GO:0030234: enzyme regulator activity | 4.58E-03 |
| 63 | GO:0044183: protein binding involved in protein folding | 5.05E-03 |
| 64 | GO:0047372: acylglycerol lipase activity | 5.05E-03 |
| 65 | GO:0031072: heat shock protein binding | 6.06E-03 |
| 66 | GO:0051536: iron-sulfur cluster binding | 8.27E-03 |
| 67 | GO:0031418: L-ascorbic acid binding | 8.27E-03 |
| 68 | GO:0004857: enzyme inhibitor activity | 8.27E-03 |
| 69 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.34E-02 |
| 70 | GO:0046872: metal ion binding | 1.36E-02 |
| 71 | GO:0050662: coenzyme binding | 1.41E-02 |
| 72 | GO:0048038: quinone binding | 1.56E-02 |
| 73 | GO:0016597: amino acid binding | 1.94E-02 |
| 74 | GO:0102483: scopolin beta-glucosidase activity | 2.27E-02 |
| 75 | GO:0004222: metalloendopeptidase activity | 2.62E-02 |
| 76 | GO:0003746: translation elongation factor activity | 2.89E-02 |
| 77 | GO:0008422: beta-glucosidase activity | 3.08E-02 |
| 78 | GO:0050661: NADP binding | 3.17E-02 |
| 79 | GO:0003735: structural constituent of ribosome | 3.39E-02 |
| 80 | GO:0004185: serine-type carboxypeptidase activity | 3.46E-02 |
| 81 | GO:0009055: electron carrier activity | 4.32E-02 |
| 82 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 3 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 7.72E-41 |
| 5 | GO:0009534: chloroplast thylakoid | 7.30E-36 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.36E-29 |
| 7 | GO:0009941: chloroplast envelope | 1.34E-18 |
| 8 | GO:0009570: chloroplast stroma | 5.66E-17 |
| 9 | GO:0009579: thylakoid | 9.08E-12 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.97E-11 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.82E-08 |
| 12 | GO:0031977: thylakoid lumen | 4.77E-08 |
| 13 | GO:0010319: stromule | 1.60E-04 |
| 14 | GO:0010287: plastoglobule | 1.95E-04 |
| 15 | GO:0031357: integral component of chloroplast inner membrane | 3.60E-04 |
| 16 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.60E-04 |
| 17 | GO:0030076: light-harvesting complex | 4.83E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 5.89E-04 |
| 19 | GO:0042651: thylakoid membrane | 6.55E-04 |
| 20 | GO:0031969: chloroplast membrane | 9.77E-04 |
| 21 | GO:0009544: chloroplast ATP synthase complex | 1.12E-03 |
| 22 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.74E-03 |
| 23 | GO:0031982: vesicle | 2.84E-03 |
| 24 | GO:0005840: ribosome | 3.53E-03 |
| 25 | GO:0032040: small-subunit processome | 5.55E-03 |
| 26 | GO:0030095: chloroplast photosystem II | 6.59E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 8.86E-03 |
| 28 | GO:0015935: small ribosomal subunit | 9.46E-03 |
| 29 | GO:0005623: cell | 1.06E-02 |
| 30 | GO:0009522: photosystem I | 1.41E-02 |
| 31 | GO:0019898: extrinsic component of membrane | 1.48E-02 |
| 32 | GO:0015934: large ribosomal subunit | 2.71E-02 |