co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0005996: monosaccharide metabolic process	0.00E+00
7	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
8	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
9	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
10	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
11	GO:0009773: photosynthetic electron transport in photosystem I	7.43E-09
12	GO:0015979: photosynthesis	1.77E-08
13	GO:0010207: photosystem II assembly	2.44E-08
14	GO:0006636: unsaturated fatty acid biosynthetic process	2.63E-06
15	GO:0015995: chlorophyll biosynthetic process	3.63E-06
16	GO:0032544: plastid translation	1.00E-05
17	GO:0090391: granum assembly	1.33E-05
18	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.99E-05
19	GO:0071484: cellular response to light intensity	2.99E-05
20	GO:0010143: cutin biosynthetic process	5.88E-05
21	GO:0055114: oxidation-reduction process	7.92E-05
22	GO:0009768: photosynthesis, light harvesting in photosystem I	1.14E-04
23	GO:0010190: cytochrome b6f complex assembly	1.23E-04
24	GO:0009228: thiamine biosynthetic process	1.23E-04
25	GO:0042549: photosystem II stabilization	1.23E-04
26	GO:0009853: photorespiration	1.27E-04
27	GO:1901259: chloroplast rRNA processing	1.69E-04
28	GO:0010189: vitamin E biosynthetic process	1.69E-04
29	GO:0009854: oxidative photosynthetic carbon pathway	1.69E-04
30	GO:0006633: fatty acid biosynthetic process	1.92E-04
31	GO:0010114: response to red light	1.98E-04
32	GO:0009772: photosynthetic electron transport in photosystem II	2.21E-04
33	GO:0005980: glycogen catabolic process	2.84E-04
34	GO:0046467: membrane lipid biosynthetic process	2.84E-04
35	GO:0071277: cellular response to calcium ion	2.84E-04
36	GO:0015671: oxygen transport	2.84E-04
37	GO:0019544: arginine catabolic process to glutamate	2.84E-04
38	GO:0080093: regulation of photorespiration	2.84E-04
39	GO:0031998: regulation of fatty acid beta-oxidation	2.84E-04
40	GO:0034337: RNA folding	2.84E-04
41	GO:0006835: dicarboxylic acid transport	2.84E-04
42	GO:0006810: transport	3.05E-04
43	GO:0010206: photosystem II repair	4.15E-04
44	GO:0080029: cellular response to boron-containing substance levels	6.25E-04
45	GO:0071457: cellular response to ozone	6.25E-04
46	GO:0006094: gluconeogenesis	8.57E-04
47	GO:0006518: peptide metabolic process	1.01E-03
48	GO:0010025: wax biosynthetic process	1.19E-03
49	GO:0006631: fatty acid metabolic process	1.32E-03
50	GO:0009152: purine ribonucleotide biosynthetic process	1.45E-03
51	GO:0046653: tetrahydrofolate metabolic process	1.45E-03
52	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.45E-03
53	GO:0046713: borate transport	1.45E-03
54	GO:1902358: sulfate transmembrane transport	1.45E-03
55	GO:0006020: inositol metabolic process	1.45E-03
56	GO:0009765: photosynthesis, light harvesting	1.94E-03
57	GO:0045727: positive regulation of translation	1.94E-03
58	GO:0015994: chlorophyll metabolic process	1.94E-03
59	GO:0006021: inositol biosynthetic process	1.94E-03
60	GO:0071486: cellular response to high light intensity	1.94E-03
61	GO:0042631: cellular response to water deprivation	2.42E-03
62	GO:0006465: signal peptide processing	2.48E-03
63	GO:0071493: cellular response to UV-B	2.48E-03
64	GO:0006564: L-serine biosynthetic process	2.48E-03
65	GO:0010236: plastoquinone biosynthetic process	2.48E-03
66	GO:0006097: glyoxylate cycle	2.48E-03
67	GO:0006096: glycolytic process	2.64E-03
68	GO:0015986: ATP synthesis coupled proton transport	2.80E-03
69	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.06E-03
70	GO:1902456: regulation of stomatal opening	3.06E-03
71	GO:0046855: inositol phosphate dephosphorylation	3.06E-03
72	GO:0005975: carbohydrate metabolic process	3.35E-03
73	GO:0009735: response to cytokinin	3.55E-03
74	GO:0009955: adaxial/abaxial pattern specification	3.68E-03
75	GO:0071333: cellular response to glucose stimulus	3.68E-03
76	GO:0010196: nonphotochemical quenching	4.34E-03
77	GO:0008272: sulfate transport	4.34E-03
78	GO:0009769: photosynthesis, light harvesting in photosystem II	4.34E-03
79	GO:0009645: response to low light intensity stimulus	4.34E-03
80	GO:0042742: defense response to bacterium	4.45E-03
81	GO:0010027: thylakoid membrane organization	4.64E-03
82	GO:0008610: lipid biosynthetic process	5.03E-03
83	GO:0009642: response to light intensity	5.03E-03
84	GO:0009704: de-etiolation	5.03E-03
85	GO:0050821: protein stabilization	5.03E-03
86	GO:0071482: cellular response to light stimulus	5.77E-03
87	GO:0019430: removal of superoxide radicals	5.77E-03
88	GO:0009657: plastid organization	5.77E-03
89	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.77E-03
90	GO:0018298: protein-chromophore linkage	6.06E-03
91	GO:0006098: pentose-phosphate shunt	6.54E-03
92	GO:0009821: alkaloid biosynthetic process	6.54E-03
93	GO:0019432: triglyceride biosynthetic process	6.54E-03
94	GO:0090333: regulation of stomatal closure	6.54E-03
95	GO:0006783: heme biosynthetic process	6.54E-03
96	GO:0006754: ATP biosynthetic process	6.54E-03
97	GO:0010218: response to far red light	6.68E-03
98	GO:0010205: photoinhibition	7.35E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	7.35E-03
100	GO:0005982: starch metabolic process	7.35E-03
101	GO:0009637: response to blue light	7.68E-03
102	GO:0034599: cellular response to oxidative stress	8.04E-03
103	GO:0009409: response to cold	8.04E-03
104	GO:0006782: protoporphyrinogen IX biosynthetic process	8.19E-03
105	GO:0009641: shade avoidance	8.19E-03
106	GO:0043085: positive regulation of catalytic activity	9.06E-03
107	GO:0006415: translational termination	9.06E-03
108	GO:0000272: polysaccharide catabolic process	9.06E-03
109	GO:0018119: peptidyl-cysteine S-nitrosylation	9.06E-03
110	GO:0006790: sulfur compound metabolic process	9.96E-03
111	GO:0002213: defense response to insect	9.96E-03
112	GO:0016024: CDP-diacylglycerol biosynthetic process	9.96E-03
113	GO:0006108: malate metabolic process	1.09E-02
114	GO:0006006: glucose metabolic process	1.09E-02
115	GO:0009725: response to hormone	1.09E-02
116	GO:0009767: photosynthetic electron transport chain	1.09E-02
117	GO:0009658: chloroplast organization	1.17E-02
118	GO:0019253: reductive pentose-phosphate cycle	1.19E-02
119	GO:0010223: secondary shoot formation	1.19E-02
120	GO:0009266: response to temperature stimulus	1.19E-02
121	GO:0046854: phosphatidylinositol phosphorylation	1.29E-02
122	GO:0006364: rRNA processing	1.34E-02
123	GO:0009416: response to light stimulus	1.51E-02
124	GO:0080167: response to karrikin	1.54E-02
125	GO:0009695: jasmonic acid biosynthetic process	1.60E-02
126	GO:0009269: response to desiccation	1.72E-02
127	GO:0016114: terpenoid biosynthetic process	1.72E-02
128	GO:0016226: iron-sulfur cluster assembly	1.83E-02
129	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.83E-02
130	GO:0030433: ubiquitin-dependent ERAD pathway	1.83E-02
131	GO:0071215: cellular response to abscisic acid stimulus	1.95E-02
132	GO:0016117: carotenoid biosynthetic process	2.19E-02
133	GO:0070417: cellular response to cold	2.19E-02
134	GO:0042335: cuticle development	2.31E-02
135	GO:0000413: protein peptidyl-prolyl isomerization	2.31E-02
136	GO:0032259: methylation	2.38E-02
137	GO:0071472: cellular response to salt stress	2.44E-02
138	GO:0006520: cellular amino acid metabolic process	2.44E-02
139	GO:0006662: glycerol ether metabolic process	2.44E-02
140	GO:0009058: biosynthetic process	2.53E-02
141	GO:0019252: starch biosynthetic process	2.70E-02
142	GO:0010193: response to ozone	2.83E-02
143	GO:0032502: developmental process	2.97E-02
144	GO:0009630: gravitropism	2.97E-02
145	GO:1901657: glycosyl compound metabolic process	3.11E-02
146	GO:0051607: defense response to virus	3.54E-02
147	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.83E-02
148	GO:0042128: nitrate assimilation	3.98E-02
149	GO:0006974: cellular response to DNA damage stimulus	3.98E-02
150	GO:0016311: dephosphorylation	4.29E-02
151	GO:0009817: defense response to fungus, incompatible interaction	4.45E-02
152	GO:0010311: lateral root formation	4.60E-02
153	GO:0009631: cold acclimation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
2	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0008465: glycerate dehydrogenase activity	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
12	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
13	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
14	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
15	GO:0004565: beta-galactosidase activity	4.85E-05
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.37E-05
17	GO:0009011: starch synthase activity	5.37E-05
18	GO:0031409: pigment binding	8.35E-05
19	GO:0004332: fructose-bisphosphate aldolase activity	1.23E-04
20	GO:0008184: glycogen phosphorylase activity	2.84E-04
21	GO:0004645: phosphorylase activity	2.84E-04
22	GO:0045485: omega-6 fatty acid desaturase activity	2.84E-04
23	GO:0009374: biotin binding	2.84E-04
24	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.84E-04
25	GO:0015168: glycerol transmembrane transporter activity	2.84E-04
26	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.84E-04
27	GO:0005344: oxygen transporter activity	2.84E-04
28	GO:0035671: enone reductase activity	2.84E-04
29	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.84E-04
30	GO:0030234: enzyme regulator activity	5.73E-04
31	GO:0016168: chlorophyll binding	6.09E-04
32	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	6.25E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	6.25E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	6.25E-04
35	GO:0008934: inositol monophosphate 1-phosphatase activity	6.25E-04
36	GO:0018708: thiol S-methyltransferase activity	6.25E-04
37	GO:0052833: inositol monophosphate 4-phosphatase activity	6.25E-04
38	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.25E-04
39	GO:0019172: glyoxalase III activity	6.25E-04
40	GO:0008883: glutamyl-tRNA reductase activity	6.25E-04
41	GO:0047746: chlorophyllase activity	6.25E-04
42	GO:0042389: omega-3 fatty acid desaturase activity	6.25E-04
43	GO:0010297: heteropolysaccharide binding	6.25E-04
44	GO:0004617: phosphoglycerate dehydrogenase activity	6.25E-04
45	GO:0005310: dicarboxylic acid transmembrane transporter activity	1.01E-03
46	GO:0004373: glycogen (starch) synthase activity	1.01E-03
47	GO:0050734: hydroxycinnamoyltransferase activity	1.01E-03
48	GO:0004751: ribose-5-phosphate isomerase activity	1.01E-03
49	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.01E-03
50	GO:0008864: formyltetrahydrofolate deformylase activity	1.01E-03
51	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.01E-03
52	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.45E-03
53	GO:0016851: magnesium chelatase activity	1.45E-03
54	GO:0016149: translation release factor activity, codon specific	1.45E-03
55	GO:0046715: borate transmembrane transporter activity	1.45E-03
56	GO:0017077: oxidative phosphorylation uncoupler activity	1.45E-03
57	GO:0051287: NAD binding	1.86E-03
58	GO:0008453: alanine-glyoxylate transaminase activity	1.94E-03
59	GO:0015204: urea transmembrane transporter activity	1.94E-03
60	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.48E-03
61	GO:0003989: acetyl-CoA carboxylase activity	2.48E-03
62	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.06E-03
63	GO:0004784: superoxide dismutase activity	3.06E-03
64	GO:0004462: lactoylglutathione lyase activity	3.06E-03
65	GO:0016615: malate dehydrogenase activity	3.06E-03
66	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.06E-03
67	GO:0048038: quinone binding	3.22E-03
68	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.68E-03
69	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.68E-03
70	GO:0102391: decanoate--CoA ligase activity	3.68E-03
71	GO:0030060: L-malate dehydrogenase activity	3.68E-03
72	GO:0004467: long-chain fatty acid-CoA ligase activity	4.34E-03
73	GO:0019843: rRNA binding	4.45E-03
74	GO:0008271: secondary active sulfate transmembrane transporter activity	5.77E-03
75	GO:0015078: hydrogen ion transmembrane transporter activity	5.77E-03
76	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.77E-03
77	GO:0003747: translation release factor activity	6.54E-03
78	GO:0016844: strictosidine synthase activity	7.35E-03
79	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.35E-03
80	GO:0016491: oxidoreductase activity	7.62E-03
81	GO:0008047: enzyme activator activity	8.19E-03
82	GO:0050661: NADP binding	8.76E-03
83	GO:0047372: acylglycerol lipase activity	9.06E-03
84	GO:0042802: identical protein binding	9.10E-03
85	GO:0015116: sulfate transmembrane transporter activity	9.96E-03
86	GO:0051537: 2 iron, 2 sulfur cluster binding	1.07E-02
87	GO:0004022: alcohol dehydrogenase (NAD) activity	1.09E-02
88	GO:0031072: heat shock protein binding	1.09E-02
89	GO:0008168: methyltransferase activity	1.12E-02
90	GO:0008266: poly(U) RNA binding	1.19E-02
91	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.19E-02
92	GO:0005509: calcium ion binding	1.23E-02
93	GO:0051536: iron-sulfur cluster binding	1.50E-02
94	GO:0003727: single-stranded RNA binding	2.07E-02
95	GO:0047134: protein-disulfide reductase activity	2.19E-02
96	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.44E-02
97	GO:0016853: isomerase activity	2.57E-02
98	GO:0050662: coenzyme binding	2.57E-02
99	GO:0004791: thioredoxin-disulfide reductase activity	2.57E-02
100	GO:0030170: pyridoxal phosphate binding	2.66E-02
101	GO:0004872: receptor activity	2.70E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.11E-02
103	GO:0016791: phosphatase activity	3.25E-02
104	GO:0016597: amino acid binding	3.54E-02
105	GO:0015250: water channel activity	3.68E-02
106	GO:0003743: translation initiation factor activity	3.86E-02
107	GO:0102483: scopolin beta-glucosidase activity	4.13E-02
108	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.19E-02
109	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.29E-02
110	GO:0004222: metalloendopeptidase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	2.60E-53
3	GO:0009535: chloroplast thylakoid membrane	1.12E-36
4	GO:0009534: chloroplast thylakoid	1.59E-36
5	GO:0009941: chloroplast envelope	2.75E-28
6	GO:0009579: thylakoid	7.36E-22
7	GO:0009543: chloroplast thylakoid lumen	8.06E-14
8	GO:0009570: chloroplast stroma	1.27E-13
9	GO:0031977: thylakoid lumen	7.46E-10
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.64E-09
11	GO:0010287: plastoglobule	3.24E-08
12	GO:0009654: photosystem II oxygen evolving complex	8.71E-08
13	GO:0019898: extrinsic component of membrane	7.10E-07
14	GO:0030095: chloroplast photosystem II	1.56E-06
15	GO:0031969: chloroplast membrane	1.95E-05
16	GO:0010319: stromule	3.96E-05
17	GO:0030076: light-harvesting complex	7.05E-05
18	GO:0009515: granal stacked thylakoid	2.84E-04
19	GO:0005787: signal peptidase complex	2.84E-04
20	GO:0009344: nitrite reductase complex [NAD(P)H]	2.84E-04
21	GO:0048046: apoplast	4.40E-04
22	GO:0009706: chloroplast inner membrane	5.66E-04
23	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.25E-04
24	GO:0031357: integral component of chloroplast inner membrane	6.25E-04
25	GO:0010007: magnesium chelatase complex	1.01E-03
26	GO:0009317: acetyl-CoA carboxylase complex	1.01E-03
27	GO:0009517: PSII associated light-harvesting complex II	1.94E-03
28	GO:0009544: chloroplast ATP synthase complex	1.94E-03
29	GO:0009522: photosystem I	2.80E-03
30	GO:0009523: photosystem II	3.01E-03
31	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	3.06E-03
32	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.06E-03
33	GO:0009501: amyloplast	5.03E-03
34	GO:0005763: mitochondrial small ribosomal subunit	6.54E-03
35	GO:0005773: vacuole	8.53E-03
36	GO:0032040: small-subunit processome	9.96E-03
37	GO:0016021: integral component of membrane	1.36E-02
38	GO:0043234: protein complex	1.39E-02
39	GO:0042651: thylakoid membrane	1.60E-02
40	GO:0015935: small ribosomal subunit	1.72E-02
41	GO:0005777: peroxisome	1.85E-02
42	GO:0005623: cell	2.46E-02
43	GO:0005840: ribosome	4.55E-02