co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000469: negative regulation of peroxidase activity	0.00E+00
3	GO:0090706: specification of plant organ position	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0080127: fruit septum development	0.00E+00
10	GO:0009733: response to auxin	2.56E-10
11	GO:0009734: auxin-activated signaling pathway	1.17E-07
12	GO:0046620: regulation of organ growth	1.90E-06
13	GO:0040008: regulation of growth	3.47E-06
14	GO:1900865: chloroplast RNA modification	1.74E-04
15	GO:0016554: cytidine to uridine editing	5.57E-04
16	GO:0030488: tRNA methylation	7.36E-04
17	GO:0000025: maltose catabolic process	7.52E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	7.52E-04
19	GO:0030198: extracellular matrix organization	7.52E-04
20	GO:0006438: valyl-tRNA aminoacylation	7.52E-04
21	GO:0046520: sphingoid biosynthetic process	7.52E-04
22	GO:0010480: microsporocyte differentiation	7.52E-04
23	GO:0051247: positive regulation of protein metabolic process	7.52E-04
24	GO:1902458: positive regulation of stomatal opening	7.52E-04
25	GO:0015904: tetracycline transport	7.52E-04
26	GO:2000905: negative regulation of starch metabolic process	7.52E-04
27	GO:0010450: inflorescence meristem growth	7.52E-04
28	GO:0030307: positive regulation of cell growth	9.39E-04
29	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.49E-04
30	GO:2000070: regulation of response to water deprivation	1.17E-03
31	GO:0080005: photosystem stoichiometry adjustment	1.63E-03
32	GO:1900871: chloroplast mRNA modification	1.63E-03
33	GO:0071497: cellular response to freezing	1.63E-03
34	GO:1900033: negative regulation of trichome patterning	1.63E-03
35	GO:0080009: mRNA methylation	1.63E-03
36	GO:0009786: regulation of asymmetric cell division	1.63E-03
37	GO:0031648: protein destabilization	1.63E-03
38	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.63E-03
39	GO:0006568: tryptophan metabolic process	1.63E-03
40	GO:2000123: positive regulation of stomatal complex development	1.63E-03
41	GO:0048507: meristem development	1.71E-03
42	GO:0009926: auxin polar transport	1.94E-03
43	GO:0009098: leucine biosynthetic process	2.02E-03
44	GO:0048829: root cap development	2.37E-03
45	GO:0009641: shade avoidance	2.37E-03
46	GO:0033591: response to L-ascorbic acid	2.69E-03
47	GO:0048586: regulation of long-day photoperiodism, flowering	2.69E-03
48	GO:0071398: cellular response to fatty acid	2.69E-03
49	GO:0045165: cell fate commitment	2.69E-03
50	GO:0090506: axillary shoot meristem initiation	2.69E-03
51	GO:0005983: starch catabolic process	3.15E-03
52	GO:0010588: cotyledon vascular tissue pattern formation	3.58E-03
53	GO:0010102: lateral root morphogenesis	3.58E-03
54	GO:0010628: positive regulation of gene expression	3.58E-03
55	GO:0006006: glucose metabolic process	3.58E-03
56	GO:0009725: response to hormone	3.58E-03
57	GO:0009767: photosynthetic electron transport chain	3.58E-03
58	GO:0010306: rhamnogalacturonan II biosynthetic process	3.91E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.91E-03
60	GO:0046739: transport of virus in multicellular host	3.91E-03
61	GO:1990019: protein storage vacuole organization	3.91E-03
62	GO:0010371: regulation of gibberellin biosynthetic process	3.91E-03
63	GO:0051513: regulation of monopolar cell growth	3.91E-03
64	GO:0010207: photosystem II assembly	4.05E-03
65	GO:0042274: ribosomal small subunit biogenesis	5.29E-03
66	GO:0009765: photosynthesis, light harvesting	5.29E-03
67	GO:2000306: positive regulation of photomorphogenesis	5.29E-03
68	GO:2000038: regulation of stomatal complex development	5.29E-03
69	GO:0009755: hormone-mediated signaling pathway	5.29E-03
70	GO:1901141: regulation of lignin biosynthetic process	5.29E-03
71	GO:0048629: trichome patterning	5.29E-03
72	GO:0010109: regulation of photosynthesis	5.29E-03
73	GO:0006865: amino acid transport	6.46E-03
74	GO:0010438: cellular response to sulfur starvation	6.81E-03
75	GO:0010158: abaxial cell fate specification	6.81E-03
76	GO:0010375: stomatal complex patterning	6.81E-03
77	GO:0080110: sporopollenin biosynthetic process	6.81E-03
78	GO:0016131: brassinosteroid metabolic process	6.81E-03
79	GO:0016120: carotene biosynthetic process	6.81E-03
80	GO:0045487: gibberellin catabolic process	6.81E-03
81	GO:0045038: protein import into chloroplast thylakoid membrane	6.81E-03
82	GO:0048497: maintenance of floral organ identity	6.81E-03
83	GO:0009107: lipoate biosynthetic process	6.81E-03
84	GO:1902183: regulation of shoot apical meristem development	6.81E-03
85	GO:0016123: xanthophyll biosynthetic process	6.81E-03
86	GO:0010431: seed maturation	6.86E-03
87	GO:0009416: response to light stimulus	7.28E-03
88	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.22E-03
89	GO:0009686: gibberellin biosynthetic process	8.22E-03
90	GO:0010358: leaf shaping	8.46E-03
91	GO:0009913: epidermal cell differentiation	8.46E-03
92	GO:1902456: regulation of stomatal opening	8.46E-03
93	GO:0003006: developmental process involved in reproduction	8.46E-03
94	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.46E-03
95	GO:0010405: arabinogalactan protein metabolic process	8.46E-03
96	GO:0009959: negative gravitropism	8.46E-03
97	GO:0071333: cellular response to glucose stimulus	1.02E-02
98	GO:0042026: protein refolding	1.02E-02
99	GO:0009082: branched-chain amino acid biosynthetic process	1.02E-02
100	GO:0006458: 'de novo' protein folding	1.02E-02
101	GO:0031930: mitochondria-nucleus signaling pathway	1.02E-02
102	GO:0009099: valine biosynthetic process	1.02E-02
103	GO:0080086: stamen filament development	1.02E-02
104	GO:0010268: brassinosteroid homeostasis	1.14E-02
105	GO:0010305: leaf vascular tissue pattern formation	1.14E-02
106	GO:0010182: sugar mediated signaling pathway	1.14E-02
107	GO:0009741: response to brassinosteroid	1.14E-02
108	GO:0030497: fatty acid elongation	1.22E-02
109	GO:0048437: floral organ development	1.22E-02
110	GO:0010098: suspensor development	1.22E-02
111	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.22E-02
112	GO:0010161: red light signaling pathway	1.22E-02
113	GO:0006955: immune response	1.22E-02
114	GO:0009646: response to absence of light	1.22E-02
115	GO:0006402: mRNA catabolic process	1.42E-02
116	GO:0010439: regulation of glucosinolate biosynthetic process	1.42E-02
117	GO:0009819: drought recovery	1.42E-02
118	GO:0006605: protein targeting	1.42E-02
119	GO:0009704: de-etiolation	1.42E-02
120	GO:0000105: histidine biosynthetic process	1.42E-02
121	GO:0045892: negative regulation of transcription, DNA-templated	1.43E-02
122	GO:0010583: response to cyclopentenone	1.50E-02
123	GO:0032502: developmental process	1.50E-02
124	GO:0009909: regulation of flower development	1.59E-02
125	GO:1901657: glycosyl compound metabolic process	1.61E-02
126	GO:0015996: chlorophyll catabolic process	1.63E-02
127	GO:0007186: G-protein coupled receptor signaling pathway	1.63E-02
128	GO:0010497: plasmodesmata-mediated intercellular transport	1.63E-02
129	GO:0009097: isoleucine biosynthetic process	1.63E-02
130	GO:0010100: negative regulation of photomorphogenesis	1.63E-02
131	GO:0010093: specification of floral organ identity	1.63E-02
132	GO:0010099: regulation of photomorphogenesis	1.63E-02
133	GO:0006464: cellular protein modification process	1.71E-02
134	GO:0009828: plant-type cell wall loosening	1.71E-02
135	GO:0009051: pentose-phosphate shunt, oxidative branch	1.86E-02
136	GO:0051865: protein autoubiquitination	1.86E-02
137	GO:0006098: pentose-phosphate shunt	1.86E-02
138	GO:2000024: regulation of leaf development	1.86E-02
139	GO:0006783: heme biosynthetic process	1.86E-02
140	GO:0000373: Group II intron splicing	1.86E-02
141	GO:0000902: cell morphogenesis	1.86E-02
142	GO:0009793: embryo development ending in seed dormancy	2.00E-02
143	GO:0009740: gibberellic acid mediated signaling pathway	2.02E-02
144	GO:0010027: thylakoid membrane organization	2.04E-02
145	GO:0009638: phototropism	2.09E-02
146	GO:0006779: porphyrin-containing compound biosynthetic process	2.09E-02
147	GO:0031425: chloroplast RNA processing	2.09E-02
148	GO:0010029: regulation of seed germination	2.16E-02
149	GO:0009826: unidimensional cell growth	2.22E-02
150	GO:0009753: response to jasmonic acid	2.25E-02
151	GO:0010629: negative regulation of gene expression	2.33E-02
152	GO:0009299: mRNA transcription	2.33E-02
153	GO:0006782: protoporphyrinogen IX biosynthetic process	2.33E-02
154	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.33E-02
155	GO:0006949: syncytium formation	2.33E-02
156	GO:0009742: brassinosteroid mediated signaling pathway	2.35E-02
157	GO:0015995: chlorophyll biosynthetic process	2.41E-02
158	GO:0048573: photoperiodism, flowering	2.41E-02
159	GO:0009773: photosynthetic electron transport in photosystem I	2.59E-02
160	GO:0009682: induced systemic resistance	2.59E-02
161	GO:0009073: aromatic amino acid family biosynthetic process	2.59E-02
162	GO:0043085: positive regulation of catalytic activity	2.59E-02
163	GO:0048229: gametophyte development	2.59E-02
164	GO:0012501: programmed cell death	2.85E-02
165	GO:0045037: protein import into chloroplast stroma	2.85E-02
166	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.85E-02
167	GO:0010582: floral meristem determinacy	2.85E-02
168	GO:0048527: lateral root development	3.09E-02
169	GO:2000012: regulation of auxin polar transport	3.12E-02
170	GO:0009785: blue light signaling pathway	3.12E-02
171	GO:0009691: cytokinin biosynthetic process	3.12E-02
172	GO:2000028: regulation of photoperiodism, flowering	3.12E-02
173	GO:0010075: regulation of meristem growth	3.12E-02
174	GO:0006094: gluconeogenesis	3.12E-02
175	GO:0006351: transcription, DNA-templated	3.35E-02
176	GO:0009867: jasmonic acid mediated signaling pathway	3.39E-02
177	GO:0048467: gynoecium development	3.40E-02
178	GO:0009933: meristem structural organization	3.40E-02
179	GO:0010223: secondary shoot formation	3.40E-02
180	GO:0009934: regulation of meristem structural organization	3.40E-02
181	GO:0006355: regulation of transcription, DNA-templated	3.47E-02
182	GO:0009790: embryo development	3.51E-02
183	GO:0034599: cellular response to oxidative stress	3.54E-02
184	GO:0090351: seedling development	3.69E-02
185	GO:0010030: positive regulation of seed germination	3.69E-02
186	GO:0000162: tryptophan biosynthetic process	3.99E-02
187	GO:0006863: purine nucleobase transport	3.99E-02
188	GO:0019762: glucosinolate catabolic process	3.99E-02
189	GO:0006631: fatty acid metabolic process	4.02E-02
190	GO:0009944: polarity specification of adaxial/abaxial axis	4.30E-02
191	GO:0080147: root hair cell development	4.30E-02
192	GO:0051017: actin filament bundle assembly	4.30E-02
193	GO:0010187: negative regulation of seed germination	4.30E-02
194	GO:0005992: trehalose biosynthetic process	4.30E-02
195	GO:0009640: photomorphogenesis	4.36E-02
196	GO:0009451: RNA modification	4.44E-02
197	GO:0042546: cell wall biogenesis	4.53E-02
198	GO:0006418: tRNA aminoacylation for protein translation	4.61E-02
199	GO:0061077: chaperone-mediated protein folding	4.93E-02
200	GO:0006306: DNA methylation	4.93E-02
201	GO:0016114: terpenoid biosynthetic process	4.93E-02
202	GO:0003333: amino acid transmembrane transport	4.93E-02
203	GO:0016998: cell wall macromolecule catabolic process	4.93E-02
204	GO:0048511: rhythmic process	4.93E-02
205	GO:0009739: response to gibberellin	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
6	GO:0005201: extracellular matrix structural constituent	0.00E+00
7	GO:0017118: lipoyltransferase activity	2.40E-05
8	GO:0001872: (1->3)-beta-D-glucan binding	1.59E-04
9	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.53E-04
10	GO:0005528: FK506 binding	7.04E-04
11	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.52E-04
12	GO:0005227: calcium activated cation channel activity	7.52E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.52E-04
14	GO:0042834: peptidoglycan binding	7.52E-04
15	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	7.52E-04
16	GO:0050308: sugar-phosphatase activity	7.52E-04
17	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.52E-04
18	GO:0004134: 4-alpha-glucanotransferase activity	7.52E-04
19	GO:0019203: carbohydrate phosphatase activity	7.52E-04
20	GO:0008395: steroid hydroxylase activity	7.52E-04
21	GO:0052381: tRNA dimethylallyltransferase activity	7.52E-04
22	GO:0010313: phytochrome binding	7.52E-04
23	GO:0004832: valine-tRNA ligase activity	7.52E-04
24	GO:0010012: steroid 22-alpha hydroxylase activity	7.52E-04
25	GO:0000170: sphingosine hydroxylase activity	7.52E-04
26	GO:0050139: nicotinate-N-glucosyltransferase activity	7.52E-04
27	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.52E-04
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.63E-03
29	GO:0008805: carbon-monoxide oxygenase activity	1.63E-03
30	GO:0042284: sphingolipid delta-4 desaturase activity	1.63E-03
31	GO:0008493: tetracycline transporter activity	1.63E-03
32	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.63E-03
33	GO:0050736: O-malonyltransferase activity	1.63E-03
34	GO:0003852: 2-isopropylmalate synthase activity	1.63E-03
35	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.63E-03
36	GO:0043425: bHLH transcription factor binding	1.63E-03
37	GO:0016415: octanoyltransferase activity	1.63E-03
38	GO:0016805: dipeptidase activity	2.69E-03
39	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.69E-03
40	GO:0004180: carboxypeptidase activity	2.69E-03
41	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.91E-03
42	GO:0052656: L-isoleucine transaminase activity	3.91E-03
43	GO:0052654: L-leucine transaminase activity	3.91E-03
44	GO:0052655: L-valine transaminase activity	3.91E-03
45	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.29E-03
46	GO:0004084: branched-chain-amino-acid transaminase activity	5.29E-03
47	GO:0019199: transmembrane receptor protein kinase activity	5.29E-03
48	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.29E-03
49	GO:0005345: purine nucleobase transmembrane transporter activity	6.23E-03
50	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.81E-03
51	GO:0008725: DNA-3-methyladenine glycosylase activity	6.81E-03
52	GO:0033612: receptor serine/threonine kinase binding	6.86E-03
53	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.09E-03
54	GO:0004332: fructose-bisphosphate aldolase activity	8.46E-03
55	GO:0004709: MAP kinase kinase kinase activity	8.46E-03
56	GO:0004130: cytochrome-c peroxidase activity	8.46E-03
57	GO:0016688: L-ascorbate peroxidase activity	8.46E-03
58	GO:2001070: starch binding	8.46E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	8.46E-03
60	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.46E-03
61	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.02E-02
62	GO:0016832: aldehyde-lyase activity	1.02E-02
63	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.02E-02
64	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.16E-02
65	GO:0016298: lipase activity	1.46E-02
66	GO:0004871: signal transducer activity	1.51E-02
67	GO:0015171: amino acid transmembrane transporter activity	1.59E-02
68	GO:0008173: RNA methyltransferase activity	1.63E-02
69	GO:0016759: cellulose synthase activity	1.71E-02
70	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.86E-02
71	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.86E-02
72	GO:0009055: electron carrier activity	2.25E-02
73	GO:0015035: protein disulfide oxidoreductase activity	2.26E-02
74	GO:0004519: endonuclease activity	2.30E-02
75	GO:0003723: RNA binding	2.33E-02
76	GO:0004805: trehalose-phosphatase activity	2.33E-02
77	GO:0030234: enzyme regulator activity	2.33E-02
78	GO:0008047: enzyme activator activity	2.33E-02
79	GO:0102483: scopolin beta-glucosidase activity	2.41E-02
80	GO:0030247: polysaccharide binding	2.41E-02
81	GO:0016788: hydrolase activity, acting on ester bonds	2.42E-02
82	GO:0044183: protein binding involved in protein folding	2.59E-02
83	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.85E-02
84	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.09E-02
85	GO:0003725: double-stranded RNA binding	3.12E-02
86	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.40E-02
87	GO:0003712: transcription cofactor activity	3.69E-02
88	GO:0008146: sulfotransferase activity	3.69E-02
89	GO:0004190: aspartic-type endopeptidase activity	3.69E-02
90	GO:0008422: beta-glucosidase activity	3.70E-02
91	GO:0004674: protein serine/threonine kinase activity	3.72E-02
92	GO:0052689: carboxylic ester hydrolase activity	3.73E-02
93	GO:0051536: iron-sulfur cluster binding	4.30E-02
94	GO:0031418: L-ascorbic acid binding	4.30E-02
95	GO:0043621: protein self-association	4.71E-02
96	GO:0004176: ATP-dependent peptidase activity	4.93E-02
97	GO:0003964: RNA-directed DNA polymerase activity	4.93E-02
98	GO:0010333: terpene synthase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	9.87E-05
3	GO:0009528: plastid inner membrane	2.69E-03
4	GO:0019897: extrinsic component of plasma membrane	2.69E-03
5	GO:0008287: protein serine/threonine phosphatase complex	2.69E-03
6	GO:0030139: endocytic vesicle	2.69E-03
7	GO:0032585: multivesicular body membrane	3.91E-03
8	GO:0009544: chloroplast ATP synthase complex	5.29E-03
9	GO:0009527: plastid outer membrane	5.29E-03
10	GO:0046658: anchored component of plasma membrane	5.30E-03
11	GO:0009654: photosystem II oxygen evolving complex	6.23E-03
12	GO:0009543: chloroplast thylakoid lumen	7.45E-03
13	GO:0015629: actin cytoskeleton	8.22E-03
14	GO:0009986: cell surface	1.22E-02
15	GO:0019898: extrinsic component of membrane	1.31E-02
16	GO:0009501: amyloplast	1.42E-02
17	GO:0010494: cytoplasmic stress granule	1.86E-02
18	GO:0031225: anchored component of membrane	1.88E-02
19	GO:0009570: chloroplast stroma	2.47E-02
20	GO:0009534: chloroplast thylakoid	2.85E-02
21	GO:0009941: chloroplast envelope	3.28E-02
22	GO:0030095: chloroplast photosystem II	3.40E-02
23	GO:0005875: microtubule associated complex	3.99E-02
24	GO:0009532: plastid stroma	4.93E-02