co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0046486: glycerolipid metabolic process	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0034757: negative regulation of iron ion transport	3.22E-04
6	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.22E-04
7	GO:0006438: valyl-tRNA aminoacylation	3.22E-04
8	GO:0009958: positive gravitropism	3.36E-04
9	GO:0048829: root cap development	6.82E-04
10	GO:0006650: glycerophospholipid metabolic process	7.02E-04
11	GO:0061062: regulation of nematode larval development	7.02E-04
12	GO:0010271: regulation of chlorophyll catabolic process	7.02E-04
13	GO:0001736: establishment of planar polarity	7.02E-04
14	GO:0009786: regulation of asymmetric cell division	7.02E-04
15	GO:0043039: tRNA aminoacylation	7.02E-04
16	GO:0006423: cysteinyl-tRNA aminoacylation	7.02E-04
17	GO:0010311: lateral root formation	1.06E-03
18	GO:0080117: secondary growth	1.14E-03
19	GO:0042780: tRNA 3'-end processing	1.14E-03
20	GO:0030029: actin filament-based process	1.14E-03
21	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.14E-03
22	GO:0031022: nuclear migration along microfilament	1.14E-03
23	GO:0046168: glycerol-3-phosphate catabolic process	1.14E-03
24	GO:0009800: cinnamic acid biosynthetic process	1.63E-03
25	GO:0006424: glutamyl-tRNA aminoacylation	1.63E-03
26	GO:0045017: glycerolipid biosynthetic process	1.63E-03
27	GO:0051513: regulation of monopolar cell growth	1.63E-03
28	GO:0051639: actin filament network formation	1.63E-03
29	GO:0034059: response to anoxia	1.63E-03
30	GO:0010239: chloroplast mRNA processing	1.63E-03
31	GO:0007276: gamete generation	1.63E-03
32	GO:0006072: glycerol-3-phosphate metabolic process	1.63E-03
33	GO:0006418: tRNA aminoacylation for protein translation	1.74E-03
34	GO:0006021: inositol biosynthetic process	2.19E-03
35	GO:0009956: radial pattern formation	2.19E-03
36	GO:0051764: actin crosslink formation	2.19E-03
37	GO:0042127: regulation of cell proliferation	2.47E-03
38	GO:0009904: chloroplast accumulation movement	2.80E-03
39	GO:0009696: salicylic acid metabolic process	2.80E-03
40	GO:0009658: chloroplast organization	3.32E-03
41	GO:0007018: microtubule-based movement	3.35E-03
42	GO:0048831: regulation of shoot system development	3.46E-03
43	GO:0003006: developmental process involved in reproduction	3.46E-03
44	GO:0016554: cytidine to uridine editing	3.46E-03
45	GO:0006559: L-phenylalanine catabolic process	3.46E-03
46	GO:0048509: regulation of meristem development	4.17E-03
47	GO:0009903: chloroplast avoidance movement	4.17E-03
48	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.17E-03
49	GO:0051726: regulation of cell cycle	4.54E-03
50	GO:0000082: G1/S transition of mitotic cell cycle	4.92E-03
51	GO:0010444: guard mother cell differentiation	4.92E-03
52	GO:0009610: response to symbiotic fungus	4.92E-03
53	GO:1900056: negative regulation of leaf senescence	4.92E-03
54	GO:0010492: maintenance of shoot apical meristem identity	5.71E-03
55	GO:0000105: histidine biosynthetic process	5.71E-03
56	GO:0009231: riboflavin biosynthetic process	5.71E-03
57	GO:0006353: DNA-templated transcription, termination	5.71E-03
58	GO:0009627: systemic acquired resistance	6.22E-03
59	GO:0032544: plastid translation	6.55E-03
60	GO:0071482: cellular response to light stimulus	6.55E-03
61	GO:0046916: cellular transition metal ion homeostasis	7.42E-03
62	GO:0000373: Group II intron splicing	7.42E-03
63	GO:0048589: developmental growth	7.42E-03
64	GO:0009056: catabolic process	7.42E-03
65	GO:0048507: meristem development	7.42E-03
66	GO:0000160: phosphorelay signal transduction system	7.64E-03
67	GO:0016571: histone methylation	8.34E-03
68	GO:0016573: histone acetylation	8.34E-03
69	GO:1900865: chloroplast RNA modification	8.34E-03
70	GO:0006535: cysteine biosynthetic process from serine	9.30E-03
71	GO:0031627: telomeric loop formation	9.30E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	9.30E-03
73	GO:0019538: protein metabolic process	9.30E-03
74	GO:0016485: protein processing	1.03E-02
75	GO:0048765: root hair cell differentiation	1.03E-02
76	GO:0008285: negative regulation of cell proliferation	1.03E-02
77	GO:0030001: metal ion transport	1.05E-02
78	GO:0010582: floral meristem determinacy	1.13E-02
79	GO:0010152: pollen maturation	1.13E-02
80	GO:0006790: sulfur compound metabolic process	1.13E-02
81	GO:0045037: protein import into chloroplast stroma	1.13E-02
82	GO:0009926: auxin polar transport	1.19E-02
83	GO:0009718: anthocyanin-containing compound biosynthetic process	1.24E-02
84	GO:0009965: leaf morphogenesis	1.34E-02
85	GO:0009887: animal organ morphogenesis	1.35E-02
86	GO:0010540: basipetal auxin transport	1.35E-02
87	GO:0009266: response to temperature stimulus	1.35E-02
88	GO:0048467: gynoecium development	1.35E-02
89	GO:0009933: meristem structural organization	1.35E-02
90	GO:0009734: auxin-activated signaling pathway	1.40E-02
91	GO:0046854: phosphatidylinositol phosphorylation	1.46E-02
92	GO:0009825: multidimensional cell growth	1.46E-02
93	GO:0009736: cytokinin-activated signaling pathway	1.61E-02
94	GO:0080147: root hair cell development	1.70E-02
95	GO:0051017: actin filament bundle assembly	1.70E-02
96	GO:0006289: nucleotide-excision repair	1.70E-02
97	GO:0019344: cysteine biosynthetic process	1.70E-02
98	GO:0006338: chromatin remodeling	1.70E-02
99	GO:0007010: cytoskeleton organization	1.70E-02
100	GO:0003333: amino acid transmembrane transport	1.95E-02
101	GO:0009416: response to light stimulus	1.98E-02
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.02E-02
103	GO:0016226: iron-sulfur cluster assembly	2.08E-02
104	GO:0007005: mitochondrion organization	2.08E-02
105	GO:0035428: hexose transmembrane transport	2.08E-02
106	GO:0071215: cellular response to abscisic acid stimulus	2.22E-02
107	GO:0006355: regulation of transcription, DNA-templated	2.24E-02
108	GO:0051301: cell division	2.25E-02
109	GO:0009624: response to nematode	2.30E-02
110	GO:0048443: stamen development	2.35E-02
111	GO:0006284: base-excision repair	2.35E-02
112	GO:0070417: cellular response to cold	2.49E-02
113	GO:0016117: carotenoid biosynthetic process	2.49E-02
114	GO:0000271: polysaccharide biosynthetic process	2.63E-02
115	GO:0010087: phloem or xylem histogenesis	2.63E-02
116	GO:0010305: leaf vascular tissue pattern formation	2.78E-02
117	GO:0046323: glucose import	2.78E-02
118	GO:0009741: response to brassinosteroid	2.78E-02
119	GO:0045489: pectin biosynthetic process	2.78E-02
120	GO:0008654: phospholipid biosynthetic process	3.07E-02
121	GO:0048364: root development	3.33E-02
122	GO:0010583: response to cyclopentenone	3.38E-02
123	GO:0006633: fatty acid biosynthetic process	3.61E-02
124	GO:0019760: glucosinolate metabolic process	3.70E-02
125	GO:0006351: transcription, DNA-templated	3.76E-02
126	GO:0051607: defense response to virus	4.03E-02
127	GO:0000910: cytokinesis	4.03E-02
128	GO:0016126: sterol biosynthetic process	4.19E-02
129	GO:0010029: regulation of seed germination	4.36E-02
130	GO:0007166: cell surface receptor signaling pathway	4.52E-02
131	GO:0010411: xyloglucan metabolic process	4.71E-02
132	GO:0015995: chlorophyll biosynthetic process	4.71E-02
133	GO:0016311: dephosphorylation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
5	GO:0004401: histidinol-phosphatase activity	0.00E+00
6	GO:0010011: auxin binding	6.61E-05
7	GO:0004818: glutamate-tRNA ligase activity	3.22E-04
8	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	3.22E-04
9	GO:0004832: valine-tRNA ligase activity	3.22E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.22E-04
11	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.22E-04
12	GO:0005227: calcium activated cation channel activity	3.22E-04
13	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	3.22E-04
14	GO:0009884: cytokinin receptor activity	7.02E-04
15	GO:0050017: L-3-cyanoalanine synthase activity	7.02E-04
16	GO:0010296: prenylcysteine methylesterase activity	7.02E-04
17	GO:0004047: aminomethyltransferase activity	7.02E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	7.02E-04
19	GO:0004817: cysteine-tRNA ligase activity	7.02E-04
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.02E-04
21	GO:0004109: coproporphyrinogen oxidase activity	7.02E-04
22	GO:0008805: carbon-monoxide oxygenase activity	7.02E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	7.02E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	7.02E-04
25	GO:0005034: osmosensor activity	1.14E-03
26	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.14E-03
27	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.14E-03
28	GO:0045548: phenylalanine ammonia-lyase activity	1.14E-03
29	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.14E-03
30	GO:0080031: methyl salicylate esterase activity	1.63E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	1.63E-03
32	GO:0043424: protein histidine kinase binding	1.74E-03
33	GO:0070628: proteasome binding	2.19E-03
34	GO:0010328: auxin influx transmembrane transporter activity	2.19E-03
35	GO:0019199: transmembrane receptor protein kinase activity	2.19E-03
36	GO:0004812: aminoacyl-tRNA ligase activity	2.68E-03
37	GO:0005471: ATP:ADP antiporter activity	2.80E-03
38	GO:0008725: DNA-3-methyladenine glycosylase activity	2.80E-03
39	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.12E-03
40	GO:0031593: polyubiquitin binding	3.46E-03
41	GO:0080030: methyl indole-3-acetate esterase activity	3.46E-03
42	GO:0019900: kinase binding	4.17E-03
43	GO:0004124: cysteine synthase activity	4.17E-03
44	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.17E-03
45	GO:0046914: transition metal ion binding	6.55E-03
46	GO:0005096: GTPase activator activity	7.64E-03
47	GO:0004673: protein histidine kinase activity	9.30E-03
48	GO:0005515: protein binding	9.70E-03
49	GO:0003691: double-stranded telomeric DNA binding	1.03E-02
50	GO:0000049: tRNA binding	1.13E-02
51	GO:0003725: double-stranded RNA binding	1.24E-02
52	GO:0000155: phosphorelay sensor kinase activity	1.24E-02
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.35E-02
54	GO:0016301: kinase activity	1.51E-02
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.58E-02
56	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.58E-02
57	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.58E-02
58	GO:0043130: ubiquitin binding	1.70E-02
59	GO:0003777: microtubule motor activity	1.79E-02
60	GO:0004707: MAP kinase activity	1.95E-02
61	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.08E-02
62	GO:0030570: pectate lyase activity	2.22E-02
63	GO:0003779: actin binding	2.23E-02
64	GO:0004871: signal transducer activity	2.58E-02
65	GO:0005355: glucose transmembrane transporter activity	2.92E-02
66	GO:0016853: isomerase activity	2.92E-02
67	GO:0010181: FMN binding	2.92E-02
68	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.98E-02
69	GO:0019901: protein kinase binding	3.07E-02
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.23E-02
71	GO:0000156: phosphorelay response regulator activity	3.54E-02
72	GO:0051015: actin filament binding	3.54E-02
73	GO:0004672: protein kinase activity	3.68E-02
74	GO:0016759: cellulose synthase activity	3.70E-02
75	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.70E-02
76	GO:0003684: damaged DNA binding	3.70E-02
77	GO:0016791: phosphatase activity	3.70E-02
78	GO:0008237: metallopeptidase activity	3.86E-02
79	GO:0005200: structural constituent of cytoskeleton	3.86E-02
80	GO:0008017: microtubule binding	4.14E-02
81	GO:0030247: polysaccharide binding	4.71E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.71E-02
83	GO:0008236: serine-type peptidase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0009986: cell surface	2.67E-04
5	GO:0009513: etioplast	7.02E-04
6	GO:0009509: chromoplast	1.14E-03
7	GO:0030139: endocytic vesicle	1.14E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.63E-03
9	GO:0032585: multivesicular body membrane	1.63E-03
10	GO:0032432: actin filament bundle	1.63E-03
11	GO:0005871: kinesin complex	2.68E-03
12	GO:0009501: amyloplast	5.71E-03
13	GO:0000783: nuclear telomere cap complex	6.55E-03
14	GO:0005884: actin filament	1.03E-02
15	GO:0046658: anchored component of plasma membrane	1.21E-02
16	GO:0016602: CCAAT-binding factor complex	1.24E-02
17	GO:0005875: microtubule associated complex	1.58E-02
18	GO:0005874: microtubule	1.86E-02
19	GO:0009532: plastid stroma	1.95E-02
20	GO:0009570: chloroplast stroma	2.25E-02
21	GO:0009507: chloroplast	2.87E-02
22	GO:0005623: cell	2.95E-02
23	GO:0031965: nuclear membrane	3.07E-02
24	GO:0005886: plasma membrane	3.41E-02