co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:1905177: tracheary element differentiation	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0043392: negative regulation of DNA binding	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0010182: sugar mediated signaling pathway	2.06E-04
8	GO:1905039: carboxylic acid transmembrane transport	2.51E-04
9	GO:1905200: gibberellic acid transmembrane transport	2.51E-04
10	GO:1904966: positive regulation of vitamin E biosynthetic process	2.51E-04
11	GO:0010480: microsporocyte differentiation	2.51E-04
12	GO:0006659: phosphatidylserine biosynthetic process	2.51E-04
13	GO:1904964: positive regulation of phytol biosynthetic process	2.51E-04
14	GO:0042371: vitamin K biosynthetic process	2.51E-04
15	GO:1902458: positive regulation of stomatal opening	2.51E-04
16	GO:0015904: tetracycline transport	2.51E-04
17	GO:0005991: trehalose metabolic process	2.51E-04
18	GO:0000305: response to oxygen radical	2.51E-04
19	GO:0080112: seed growth	2.51E-04
20	GO:0030198: extracellular matrix organization	2.51E-04
21	GO:0009658: chloroplast organization	3.73E-04
22	GO:0031425: chloroplast RNA processing	4.10E-04
23	GO:0018026: peptidyl-lysine monomethylation	5.53E-04
24	GO:0060151: peroxisome localization	5.53E-04
25	GO:0071497: cellular response to freezing	5.53E-04
26	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.53E-04
27	GO:0006568: tryptophan metabolic process	5.53E-04
28	GO:0010024: phytochromobilin biosynthetic process	5.53E-04
29	GO:0051645: Golgi localization	5.53E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.53E-04
31	GO:0009773: photosynthetic electron transport in photosystem I	5.54E-04
32	GO:0030048: actin filament-based movement	7.18E-04
33	GO:0006788: heme oxidation	8.99E-04
34	GO:0051646: mitochondrion localization	8.99E-04
35	GO:0090436: leaf pavement cell development	8.99E-04
36	GO:0010623: programmed cell death involved in cell development	8.99E-04
37	GO:0033591: response to L-ascorbic acid	8.99E-04
38	GO:0016556: mRNA modification	1.28E-03
39	GO:0006168: adenine salvage	1.28E-03
40	GO:0043572: plastid fission	1.28E-03
41	GO:0090308: regulation of methylation-dependent chromatin silencing	1.28E-03
42	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.28E-03
43	GO:0010371: regulation of gibberellin biosynthetic process	1.28E-03
44	GO:0006166: purine ribonucleoside salvage	1.28E-03
45	GO:0009102: biotin biosynthetic process	1.28E-03
46	GO:0061077: chaperone-mediated protein folding	1.34E-03
47	GO:0006855: drug transmembrane transport	1.41E-03
48	GO:0030245: cellulose catabolic process	1.46E-03
49	GO:0010508: positive regulation of autophagy	1.71E-03
50	GO:0006749: glutathione metabolic process	1.71E-03
51	GO:0006021: inositol biosynthetic process	1.71E-03
52	GO:1901141: regulation of lignin biosynthetic process	1.71E-03
53	GO:0010109: regulation of photosynthesis	1.71E-03
54	GO:0009765: photosynthesis, light harvesting	1.71E-03
55	GO:0010236: plastoquinone biosynthetic process	2.19E-03
56	GO:0045038: protein import into chloroplast thylakoid membrane	2.19E-03
57	GO:0044209: AMP salvage	2.19E-03
58	GO:0008654: phospholipid biosynthetic process	2.51E-03
59	GO:0009791: post-embryonic development	2.51E-03
60	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.70E-03
61	GO:0000741: karyogamy	2.70E-03
62	GO:1902456: regulation of stomatal opening	2.70E-03
63	GO:0010405: arabinogalactan protein metabolic process	2.70E-03
64	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.70E-03
65	GO:0032502: developmental process	2.86E-03
66	GO:0010090: trichome morphogenesis	3.05E-03
67	GO:2000033: regulation of seed dormancy process	3.24E-03
68	GO:0042372: phylloquinone biosynthetic process	3.24E-03
69	GO:0006458: 'de novo' protein folding	3.24E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	3.24E-03
71	GO:0048509: regulation of meristem development	3.24E-03
72	GO:0030488: tRNA methylation	3.24E-03
73	GO:0010189: vitamin E biosynthetic process	3.24E-03
74	GO:0042026: protein refolding	3.24E-03
75	GO:0010444: guard mother cell differentiation	3.82E-03
76	GO:0009772: photosynthetic electron transport in photosystem II	3.82E-03
77	GO:0048437: floral organ development	3.82E-03
78	GO:0046620: regulation of organ growth	4.44E-03
79	GO:0070413: trehalose metabolism in response to stress	4.44E-03
80	GO:0009690: cytokinin metabolic process	4.44E-03
81	GO:0006605: protein targeting	4.44E-03
82	GO:2000070: regulation of response to water deprivation	4.44E-03
83	GO:0052543: callose deposition in cell wall	4.44E-03
84	GO:0015996: chlorophyll catabolic process	5.08E-03
85	GO:0007186: G-protein coupled receptor signaling pathway	5.08E-03
86	GO:0009638: phototropism	6.46E-03
87	GO:1900865: chloroplast RNA modification	6.46E-03
88	GO:0009641: shade avoidance	7.20E-03
89	GO:0010162: seed dormancy process	7.20E-03
90	GO:0006896: Golgi to vacuole transport	7.20E-03
91	GO:0015770: sucrose transport	7.96E-03
92	GO:0009073: aromatic amino acid family biosynthetic process	7.96E-03
93	GO:0048229: gametophyte development	7.96E-03
94	GO:0010216: maintenance of DNA methylation	7.96E-03
95	GO:0010015: root morphogenesis	7.96E-03
96	GO:0016024: CDP-diacylglycerol biosynthetic process	8.75E-03
97	GO:0045037: protein import into chloroplast stroma	8.75E-03
98	GO:0010102: lateral root morphogenesis	9.57E-03
99	GO:0010628: positive regulation of gene expression	9.57E-03
100	GO:0050826: response to freezing	9.57E-03
101	GO:0010075: regulation of meristem growth	9.57E-03
102	GO:0009767: photosynthetic electron transport chain	9.57E-03
103	GO:0010207: photosystem II assembly	1.04E-02
104	GO:0009934: regulation of meristem structural organization	1.04E-02
105	GO:0048467: gynoecium development	1.04E-02
106	GO:0010143: cutin biosynthetic process	1.04E-02
107	GO:0010020: chloroplast fission	1.04E-02
108	GO:0019853: L-ascorbic acid biosynthetic process	1.13E-02
109	GO:0010030: positive regulation of seed germination	1.13E-02
110	GO:0009901: anther dehiscence	1.13E-02
111	GO:0009555: pollen development	1.14E-02
112	GO:0006071: glycerol metabolic process	1.22E-02
113	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.27E-02
114	GO:0051301: cell division	1.30E-02
115	GO:0005992: trehalose biosynthetic process	1.31E-02
116	GO:0010431: seed maturation	1.50E-02
117	GO:0006730: one-carbon metabolic process	1.60E-02
118	GO:0031348: negative regulation of defense response	1.60E-02
119	GO:0009742: brassinosteroid mediated signaling pathway	1.68E-02
120	GO:0006012: galactose metabolic process	1.71E-02
121	GO:0010089: xylem development	1.81E-02
122	GO:0016042: lipid catabolic process	1.92E-02
123	GO:0016117: carotenoid biosynthetic process	1.92E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.92E-02
125	GO:0042147: retrograde transport, endosome to Golgi	1.92E-02
126	GO:0006810: transport	1.99E-02
127	GO:0010118: stomatal movement	2.02E-02
128	GO:0048653: anther development	2.02E-02
129	GO:0042631: cellular response to water deprivation	2.02E-02
130	GO:0010154: fruit development	2.14E-02
131	GO:0010197: polar nucleus fusion	2.14E-02
132	GO:0009741: response to brassinosteroid	2.14E-02
133	GO:0009646: response to absence of light	2.25E-02
134	GO:0006623: protein targeting to vacuole	2.36E-02
135	GO:0006891: intra-Golgi vesicle-mediated transport	2.48E-02
136	GO:0010583: response to cyclopentenone	2.60E-02
137	GO:1901657: glycosyl compound metabolic process	2.72E-02
138	GO:0010252: auxin homeostasis	2.85E-02
139	GO:0010027: thylakoid membrane organization	3.23E-02
140	GO:0009607: response to biotic stimulus	3.36E-02
141	GO:0006888: ER to Golgi vesicle-mediated transport	3.62E-02
142	GO:0016049: cell growth	3.76E-02
143	GO:0018298: protein-chromophore linkage	3.90E-02
144	GO:0009832: plant-type cell wall biogenesis	4.04E-02
145	GO:0000160: phosphorelay signal transduction system	4.04E-02
146	GO:0009416: response to light stimulus	4.07E-02
147	GO:0009407: toxin catabolic process	4.18E-02
148	GO:0009631: cold acclimation	4.32E-02
149	GO:0016051: carbohydrate biosynthetic process	4.61E-02
150	GO:0007049: cell cycle	4.73E-02
151	GO:0048366: leaf development	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0004856: xylulokinase activity	2.51E-04
8	GO:0005080: protein kinase C binding	2.51E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.51E-04
10	GO:0050139: nicotinate-N-glucosyltransferase activity	2.51E-04
11	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.51E-04
12	GO:1905201: gibberellin transmembrane transporter activity	2.51E-04
13	GO:0004512: inositol-3-phosphate synthase activity	5.53E-04
14	GO:0004362: glutathione-disulfide reductase activity	5.53E-04
15	GO:0008493: tetracycline transporter activity	5.53E-04
16	GO:0015238: drug transmembrane transporter activity	6.71E-04
17	GO:0003774: motor activity	8.08E-04
18	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.99E-04
19	GO:0005528: FK506 binding	1.11E-03
20	GO:0003999: adenine phosphoribosyltransferase activity	1.28E-03
21	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.28E-03
22	GO:0008810: cellulase activity	1.59E-03
23	GO:0043495: protein anchor	1.71E-03
24	GO:0004392: heme oxygenase (decyclizing) activity	1.71E-03
25	GO:0046556: alpha-L-arabinofuranosidase activity	1.71E-03
26	GO:0004659: prenyltransferase activity	1.71E-03
27	GO:0016279: protein-lysine N-methyltransferase activity	1.71E-03
28	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.71E-03
29	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.19E-03
30	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.70E-03
31	GO:0008200: ion channel inhibitor activity	2.70E-03
32	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.70E-03
33	GO:0004605: phosphatidate cytidylyltransferase activity	2.70E-03
34	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.70E-03
35	GO:0016791: phosphatase activity	3.24E-03
36	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.24E-03
37	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.24E-03
38	GO:0005215: transporter activity	3.76E-03
39	GO:0019899: enzyme binding	3.82E-03
40	GO:0004033: aldo-keto reductase (NADP) activity	4.44E-03
41	GO:0015297: antiporter activity	5.00E-03
42	GO:0008173: RNA methyltransferase activity	5.08E-03
43	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.75E-03
44	GO:0015020: glucuronosyltransferase activity	7.20E-03
45	GO:0008515: sucrose transmembrane transporter activity	7.96E-03
46	GO:0044183: protein binding involved in protein folding	7.96E-03
47	GO:0016788: hydrolase activity, acting on ester bonds	9.47E-03
48	GO:0004089: carbonate dehydratase activity	9.57E-03
49	GO:0031072: heat shock protein binding	9.57E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.62E-03
51	GO:0051119: sugar transmembrane transporter activity	1.13E-02
52	GO:0052689: carboxylic ester hydrolase activity	1.38E-02
53	GO:0004176: ATP-dependent peptidase activity	1.50E-02
54	GO:0033612: receptor serine/threonine kinase binding	1.50E-02
55	GO:0051082: unfolded protein binding	1.59E-02
56	GO:0004871: signal transducer activity	1.62E-02
57	GO:0022891: substrate-specific transmembrane transporter activity	1.71E-02
58	GO:0030246: carbohydrate binding	1.78E-02
59	GO:0048038: quinone binding	2.48E-02
60	GO:0000156: phosphorelay response regulator activity	2.72E-02
61	GO:0016759: cellulose synthase activity	2.85E-02
62	GO:0008237: metallopeptidase activity	2.97E-02
63	GO:0016597: amino acid binding	3.10E-02
64	GO:0016168: chlorophyll binding	3.36E-02
65	GO:0008375: acetylglucosaminyltransferase activity	3.49E-02
66	GO:0042802: identical protein binding	3.49E-02
67	GO:0102483: scopolin beta-glucosidase activity	3.62E-02
68	GO:0004222: metalloendopeptidase activity	4.18E-02
69	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.61E-02
70	GO:0008422: beta-glucosidase activity	4.90E-02
71	GO:0000149: SNARE binding	4.90E-02
72	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.49E-07
2	GO:0009535: chloroplast thylakoid membrane	4.04E-05
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.46E-04
4	GO:0016459: myosin complex	4.80E-04
5	GO:0031969: chloroplast membrane	5.52E-04
6	GO:0009528: plastid inner membrane	8.99E-04
7	GO:0009570: chloroplast stroma	1.45E-03
8	GO:0009544: chloroplast ATP synthase complex	1.71E-03
9	GO:0009527: plastid outer membrane	1.71E-03
10	GO:0009543: chloroplast thylakoid lumen	3.52E-03
11	GO:0016021: integral component of membrane	3.84E-03
12	GO:0009941: chloroplast envelope	3.91E-03
13	GO:0012507: ER to Golgi transport vesicle membrane	4.44E-03
14	GO:0005720: nuclear heterochromatin	5.75E-03
15	GO:0031902: late endosome membrane	7.59E-03
16	GO:0009508: plastid chromosome	9.57E-03
17	GO:0005578: proteinaceous extracellular matrix	9.57E-03
18	GO:0042651: thylakoid membrane	1.41E-02
19	GO:0009654: photosystem II oxygen evolving complex	1.41E-02
20	GO:0009532: plastid stroma	1.50E-02
21	GO:0009534: chloroplast thylakoid	1.51E-02
22	GO:0005770: late endosome	2.14E-02
23	GO:0009523: photosystem II	2.36E-02
24	GO:0019898: extrinsic component of membrane	2.36E-02
25	GO:0010319: stromule	2.97E-02
26	GO:0009295: nucleoid	2.97E-02
27	GO:0046658: anchored component of plasma membrane	3.64E-02
28	GO:0009707: chloroplast outer membrane	3.90E-02
29	GO:0005886: plasma membrane	4.28E-02
30	GO:0005576: extracellular region	4.44E-02
31	GO:0016020: membrane	4.67E-02