co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0045184: establishment of protein localization	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0015882: L-ascorbic acid transport	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
7	GO:1905157: positive regulation of photosynthesis	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
10	GO:0006418: tRNA aminoacylation for protein translation	8.68E-05
11	GO:1901259: chloroplast rRNA processing	1.39E-04
12	GO:0048437: floral organ development	1.82E-04
13	GO:0006353: DNA-templated transcription, termination	2.32E-04
14	GO:0090558: plant epidermis development	2.51E-04
15	GO:0000476: maturation of 4.5S rRNA	2.51E-04
16	GO:0000967: rRNA 5'-end processing	2.51E-04
17	GO:1905039: carboxylic acid transmembrane transport	2.51E-04
18	GO:1905200: gibberellic acid transmembrane transport	2.51E-04
19	GO:0010063: positive regulation of trichoblast fate specification	2.51E-04
20	GO:0043686: co-translational protein modification	2.51E-04
21	GO:0035987: endodermal cell differentiation	2.51E-04
22	GO:0043007: maintenance of rDNA	2.51E-04
23	GO:0010028: xanthophyll cycle	2.51E-04
24	GO:0005991: trehalose metabolic process	2.51E-04
25	GO:0042659: regulation of cell fate specification	2.51E-04
26	GO:0080112: seed growth	2.51E-04
27	GO:0005980: glycogen catabolic process	2.51E-04
28	GO:0009657: plastid organization	2.86E-04
29	GO:0009658: chloroplast organization	3.73E-04
30	GO:0018026: peptidyl-lysine monomethylation	5.53E-04
31	GO:0000256: allantoin catabolic process	5.53E-04
32	GO:0071497: cellular response to freezing	5.53E-04
33	GO:1904143: positive regulation of carotenoid biosynthetic process	5.53E-04
34	GO:0006568: tryptophan metabolic process	5.53E-04
35	GO:0034470: ncRNA processing	5.53E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.53E-04
37	GO:0009773: photosynthetic electron transport in photosystem I	5.54E-04
38	GO:0009416: response to light stimulus	7.66E-04
39	GO:0006954: inflammatory response	8.99E-04
40	GO:0010136: ureide catabolic process	8.99E-04
41	GO:0006696: ergosterol biosynthetic process	8.99E-04
42	GO:0033591: response to L-ascorbic acid	8.99E-04
43	GO:0090708: specification of plant organ axis polarity	8.99E-04
44	GO:0016556: mRNA modification	1.28E-03
45	GO:0043572: plastid fission	1.28E-03
46	GO:0045338: farnesyl diphosphate metabolic process	1.28E-03
47	GO:0010071: root meristem specification	1.28E-03
48	GO:0009102: biotin biosynthetic process	1.28E-03
49	GO:0009152: purine ribonucleotide biosynthetic process	1.28E-03
50	GO:0010601: positive regulation of auxin biosynthetic process	1.28E-03
51	GO:0046653: tetrahydrofolate metabolic process	1.28E-03
52	GO:0010239: chloroplast mRNA processing	1.28E-03
53	GO:0006145: purine nucleobase catabolic process	1.28E-03
54	GO:0006855: drug transmembrane transport	1.41E-03
55	GO:0030104: water homeostasis	1.71E-03
56	GO:1901141: regulation of lignin biosynthetic process	1.71E-03
57	GO:0042274: ribosomal small subunit biogenesis	1.71E-03
58	GO:0006221: pyrimidine nucleotide biosynthetic process	1.71E-03
59	GO:0006662: glycerol ether metabolic process	2.18E-03
60	GO:0048367: shoot system development	2.18E-03
61	GO:0032543: mitochondrial translation	2.19E-03
62	GO:0006564: L-serine biosynthetic process	2.19E-03
63	GO:0031365: N-terminal protein amino acid modification	2.19E-03
64	GO:0000741: karyogamy	2.70E-03
65	GO:0042793: transcription from plastid promoter	2.70E-03
66	GO:0009643: photosynthetic acclimation	2.70E-03
67	GO:0009742: brassinosteroid mediated signaling pathway	2.85E-03
68	GO:0032502: developmental process	2.86E-03
69	GO:0042372: phylloquinone biosynthetic process	3.24E-03
70	GO:0048280: vesicle fusion with Golgi apparatus	3.24E-03
71	GO:0030488: tRNA methylation	3.24E-03
72	GO:2000067: regulation of root morphogenesis	3.24E-03
73	GO:0009790: embryo development	4.29E-03
74	GO:0042255: ribosome assembly	4.44E-03
75	GO:0046620: regulation of organ growth	4.44E-03
76	GO:0070413: trehalose metabolism in response to stress	4.44E-03
77	GO:0010078: maintenance of root meristem identity	4.44E-03
78	GO:0055075: potassium ion homeostasis	4.44E-03
79	GO:0052543: callose deposition in cell wall	4.44E-03
80	GO:0016042: lipid catabolic process	4.56E-03
81	GO:0048481: plant ovule development	5.04E-03
82	GO:0043562: cellular response to nitrogen levels	5.08E-03
83	GO:0009451: RNA modification	5.46E-03
84	GO:0009793: embryo development ending in seed dormancy	5.58E-03
85	GO:0000902: cell morphogenesis	5.75E-03
86	GO:0098656: anion transmembrane transport	5.75E-03
87	GO:0031425: chloroplast RNA processing	6.46E-03
88	GO:2000280: regulation of root development	6.46E-03
89	GO:0009638: phototropism	6.46E-03
90	GO:0034599: cellular response to oxidative stress	6.68E-03
91	GO:0006995: cellular response to nitrogen starvation	7.20E-03
92	GO:0045036: protein targeting to chloroplast	7.20E-03
93	GO:0006896: Golgi to vacuole transport	7.20E-03
94	GO:0015770: sucrose transport	7.96E-03
95	GO:0009684: indoleacetic acid biosynthetic process	7.96E-03
96	GO:0010015: root morphogenesis	7.96E-03
97	GO:0009682: induced systemic resistance	7.96E-03
98	GO:0051707: response to other organism	8.24E-03
99	GO:0030048: actin filament-based movement	9.57E-03
100	GO:0010628: positive regulation of gene expression	9.57E-03
101	GO:0009718: anthocyanin-containing compound biosynthetic process	9.57E-03
102	GO:0010588: cotyledon vascular tissue pattern formation	9.57E-03
103	GO:0010020: chloroplast fission	1.04E-02
104	GO:0009266: response to temperature stimulus	1.04E-02
105	GO:0048467: gynoecium development	1.04E-02
106	GO:0009723: response to ethylene	1.11E-02
107	GO:0019853: L-ascorbic acid biosynthetic process	1.13E-02
108	GO:0010030: positive regulation of seed germination	1.13E-02
109	GO:0009901: anther dehiscence	1.13E-02
110	GO:0006857: oligopeptide transport	1.19E-02
111	GO:0006833: water transport	1.22E-02
112	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.27E-02
113	GO:0005992: trehalose biosynthetic process	1.31E-02
114	GO:0051302: regulation of cell division	1.41E-02
115	GO:0019915: lipid storage	1.50E-02
116	GO:0006730: one-carbon metabolic process	1.60E-02
117	GO:0031348: negative regulation of defense response	1.60E-02
118	GO:0009686: gibberellin biosynthetic process	1.71E-02
119	GO:0006012: galactose metabolic process	1.71E-02
120	GO:0042127: regulation of cell proliferation	1.81E-02
121	GO:0009306: protein secretion	1.81E-02
122	GO:0016117: carotenoid biosynthetic process	1.92E-02
123	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.92E-02
124	GO:0042147: retrograde transport, endosome to Golgi	1.92E-02
125	GO:0080022: primary root development	2.02E-02
126	GO:0010087: phloem or xylem histogenesis	2.02E-02
127	GO:0042631: cellular response to water deprivation	2.02E-02
128	GO:0009958: positive gravitropism	2.14E-02
129	GO:0010305: leaf vascular tissue pattern formation	2.14E-02
130	GO:0010197: polar nucleus fusion	2.14E-02
131	GO:0010182: sugar mediated signaling pathway	2.14E-02
132	GO:0009741: response to brassinosteroid	2.14E-02
133	GO:0010268: brassinosteroid homeostasis	2.14E-02
134	GO:0009646: response to absence of light	2.25E-02
135	GO:0048825: cotyledon development	2.36E-02
136	GO:0009556: microsporogenesis	2.36E-02
137	GO:0009851: auxin biosynthetic process	2.36E-02
138	GO:0006623: protein targeting to vacuole	2.36E-02
139	GO:0006891: intra-Golgi vesicle-mediated transport	2.48E-02
140	GO:0016132: brassinosteroid biosynthetic process	2.48E-02
141	GO:0010583: response to cyclopentenone	2.60E-02
142	GO:1901657: glycosyl compound metabolic process	2.72E-02
143	GO:0010252: auxin homeostasis	2.85E-02
144	GO:0016125: sterol metabolic process	2.85E-02
145	GO:0007166: cell surface receptor signaling pathway	3.14E-02
146	GO:0010027: thylakoid membrane organization	3.23E-02
147	GO:0016126: sterol biosynthetic process	3.23E-02
148	GO:0008380: RNA splicing	3.28E-02
149	GO:0009607: response to biotic stimulus	3.36E-02
150	GO:0006888: ER to Golgi vesicle-mediated transport	3.62E-02
151	GO:0015995: chlorophyll biosynthetic process	3.62E-02
152	GO:0009832: plant-type cell wall biogenesis	4.04E-02
153	GO:0009813: flavonoid biosynthetic process	4.04E-02
154	GO:0009555: pollen development	4.07E-02
155	GO:0009631: cold acclimation	4.32E-02
156	GO:0048527: lateral root development	4.32E-02
157	GO:0006865: amino acid transport	4.46E-02
158	GO:0015031: protein transport	4.59E-02
159	GO:0016051: carbohydrate biosynthetic process	4.61E-02
160	GO:0009853: photorespiration	4.61E-02
161	GO:0048366: leaf development	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0004038: allantoinase activity	0.00E+00
3	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0090711: FMN hydrolase activity	0.00E+00
9	GO:0002161: aminoacyl-tRNA editing activity	1.05E-05
10	GO:0004812: aminoacyl-tRNA ligase activity	1.66E-04
11	GO:0042586: peptide deformylase activity	2.51E-04
12	GO:0051777: ent-kaurenoate oxidase activity	2.51E-04
13	GO:0004856: xylulokinase activity	2.51E-04
14	GO:0004645: phosphorylase activity	2.51E-04
15	GO:0005080: protein kinase C binding	2.51E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.51E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.51E-04
18	GO:1905201: gibberellin transmembrane transporter activity	2.51E-04
19	GO:0008184: glycogen phosphorylase activity	2.51E-04
20	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.53E-04
21	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.53E-04
22	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.53E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	5.53E-04
24	GO:0015238: drug transmembrane transporter activity	6.71E-04
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.99E-04
26	GO:0008864: formyltetrahydrofolate deformylase activity	8.99E-04
27	GO:0003913: DNA photolyase activity	8.99E-04
28	GO:0009041: uridylate kinase activity	1.28E-03
29	GO:0022890: inorganic cation transmembrane transporter activity	1.28E-03
30	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.28E-03
31	GO:0045430: chalcone isomerase activity	1.71E-03
32	GO:0016279: protein-lysine N-methyltransferase activity	1.71E-03
33	GO:0003727: single-stranded RNA binding	1.73E-03
34	GO:0047134: protein-disulfide reductase activity	1.87E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.19E-03
36	GO:0005275: amine transmembrane transporter activity	2.19E-03
37	GO:0016846: carbon-sulfur lyase activity	2.19E-03
38	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-03
39	GO:0003723: RNA binding	2.42E-03
40	GO:0035673: oligopeptide transmembrane transporter activity	2.70E-03
41	GO:0016208: AMP binding	2.70E-03
42	GO:0004629: phospholipase C activity	2.70E-03
43	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-03
44	GO:0004435: phosphatidylinositol phospholipase C activity	3.24E-03
45	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.24E-03
46	GO:0008195: phosphatidate phosphatase activity	3.24E-03
47	GO:0004033: aldo-keto reductase (NADP) activity	4.44E-03
48	GO:0015297: antiporter activity	5.00E-03
49	GO:0008173: RNA methyltransferase activity	5.08E-03
50	GO:0004519: endonuclease activity	5.41E-03
51	GO:0071949: FAD binding	5.75E-03
52	GO:0005525: GTP binding	7.16E-03
53	GO:0015020: glucuronosyltransferase activity	7.20E-03
54	GO:0015386: potassium:proton antiporter activity	7.96E-03
55	GO:0008515: sucrose transmembrane transporter activity	7.96E-03
56	GO:0008559: xenobiotic-transporting ATPase activity	7.96E-03
57	GO:0000049: tRNA binding	8.75E-03
58	GO:0015198: oligopeptide transporter activity	8.75E-03
59	GO:0003725: double-stranded RNA binding	9.57E-03
60	GO:0005315: inorganic phosphate transmembrane transporter activity	9.57E-03
61	GO:0004089: carbonate dehydratase activity	9.57E-03
62	GO:0003774: motor activity	1.04E-02
63	GO:0051119: sugar transmembrane transporter activity	1.13E-02
64	GO:0005528: FK506 binding	1.31E-02
65	GO:0015079: potassium ion transmembrane transporter activity	1.41E-02
66	GO:0004176: ATP-dependent peptidase activity	1.50E-02
67	GO:0015035: protein disulfide oxidoreductase activity	1.64E-02
68	GO:0004386: helicase activity	1.73E-02
69	GO:0008514: organic anion transmembrane transporter activity	1.81E-02
70	GO:0019843: rRNA binding	1.99E-02
71	GO:0015299: solute:proton antiporter activity	2.25E-02
72	GO:0008565: protein transporter activity	2.38E-02
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.56E-02
74	GO:0016791: phosphatase activity	2.85E-02
75	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.97E-02
76	GO:0008237: metallopeptidase activity	2.97E-02
77	GO:0016597: amino acid binding	3.10E-02
78	GO:0008375: acetylglucosaminyltransferase activity	3.49E-02
79	GO:0102483: scopolin beta-glucosidase activity	3.62E-02
80	GO:0005215: transporter activity	3.76E-02
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.90E-02
82	GO:0004222: metalloendopeptidase activity	4.18E-02
83	GO:0050897: cobalt ion binding	4.32E-02
84	GO:0016788: hydrolase activity, acting on ester bonds	4.32E-02
85	GO:0003697: single-stranded DNA binding	4.61E-02
86	GO:0003993: acid phosphatase activity	4.76E-02
87	GO:0008422: beta-glucosidase activity	4.90E-02
88	GO:0000149: SNARE binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.22E-12
2	GO:0009570: chloroplast stroma	1.54E-05
3	GO:0031969: chloroplast membrane	9.40E-05
4	GO:0009295: nucleoid	3.86E-04
5	GO:0009706: chloroplast inner membrane	4.26E-04
6	GO:0009508: plastid chromosome	7.18E-04
7	GO:0033281: TAT protein transport complex	8.99E-04
8	GO:0042646: plastid nucleoid	1.28E-03
9	GO:0048226: Casparian strip	4.44E-03
10	GO:0012507: ER to Golgi transport vesicle membrane	4.44E-03
11	GO:0009536: plastid	4.60E-03
12	GO:0043231: intracellular membrane-bounded organelle	5.53E-03
13	GO:0042644: chloroplast nucleoid	5.75E-03
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.75E-03
15	GO:0016021: integral component of membrane	6.12E-03
16	GO:0005789: endoplasmic reticulum membrane	7.08E-03
17	GO:0000418: DNA-directed RNA polymerase IV complex	7.20E-03
18	GO:0016459: myosin complex	7.20E-03
19	GO:0031902: late endosome membrane	7.59E-03
20	GO:0009535: chloroplast thylakoid membrane	1.48E-02
21	GO:0009543: chloroplast thylakoid lumen	1.99E-02
22	GO:0005770: late endosome	2.14E-02
23	GO:0009941: chloroplast envelope	2.49E-02
24	GO:0005887: integral component of plasma membrane	2.92E-02
25	GO:0005778: peroxisomal membrane	2.97E-02
26	GO:0009707: chloroplast outer membrane	3.90E-02
27	GO:0000325: plant-type vacuole	4.32E-02
28	GO:0016020: membrane	4.67E-02