co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G37870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0033528: S-methylmethionine cycle	0.00E+00
8	GO:1905177: tracheary element differentiation	0.00E+00
9	GO:0009793: embryo development ending in seed dormancy	3.07E-05
10	GO:0010158: abaxial cell fate specification	6.16E-05
11	GO:0048564: photosystem I assembly	2.09E-04
12	GO:0006419: alanyl-tRNA aminoacylation	2.34E-04
13	GO:0043266: regulation of potassium ion transport	2.34E-04
14	GO:0010080: regulation of floral meristem growth	2.34E-04
15	GO:0042547: cell wall modification involved in multidimensional cell growth	2.34E-04
16	GO:0072387: flavin adenine dinucleotide metabolic process	2.34E-04
17	GO:0043087: regulation of GTPase activity	2.34E-04
18	GO:2000021: regulation of ion homeostasis	2.34E-04
19	GO:0043609: regulation of carbon utilization	2.34E-04
20	GO:0006436: tryptophanyl-tRNA aminoacylation	2.34E-04
21	GO:0000066: mitochondrial ornithine transport	2.34E-04
22	GO:0000373: Group II intron splicing	3.13E-04
23	GO:0009086: methionine biosynthetic process	3.73E-04
24	GO:0010343: singlet oxygen-mediated programmed cell death	5.20E-04
25	GO:1901529: positive regulation of anion channel activity	5.20E-04
26	GO:0060359: response to ammonium ion	5.20E-04
27	GO:0048255: mRNA stabilization	5.20E-04
28	GO:0010569: regulation of double-strand break repair via homologous recombination	5.20E-04
29	GO:0006435: threonyl-tRNA aminoacylation	5.20E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	5.20E-04
31	GO:0099402: plant organ development	5.20E-04
32	GO:0001736: establishment of planar polarity	5.20E-04
33	GO:0010582: floral meristem determinacy	5.76E-04
34	GO:0010207: photosystem II assembly	7.36E-04
35	GO:1902448: positive regulation of shade avoidance	8.44E-04
36	GO:0006000: fructose metabolic process	8.44E-04
37	GO:0010022: meristem determinacy	8.44E-04
38	GO:1901672: positive regulation of systemic acquired resistance	8.44E-04
39	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.44E-04
40	GO:0010623: programmed cell death involved in cell development	8.44E-04
41	GO:0080055: low-affinity nitrate transport	8.44E-04
42	GO:0006696: ergosterol biosynthetic process	8.44E-04
43	GO:0043157: response to cation stress	8.44E-04
44	GO:0051639: actin filament network formation	1.20E-03
45	GO:0034059: response to anoxia	1.20E-03
46	GO:0009800: cinnamic acid biosynthetic process	1.20E-03
47	GO:1990019: protein storage vacuole organization	1.20E-03
48	GO:1901332: negative regulation of lateral root development	1.20E-03
49	GO:0051513: regulation of monopolar cell growth	1.20E-03
50	GO:0006730: one-carbon metabolic process	1.33E-03
51	GO:0051781: positive regulation of cell division	1.61E-03
52	GO:0051764: actin crosslink formation	1.61E-03
53	GO:0051322: anaphase	1.61E-03
54	GO:0010508: positive regulation of autophagy	1.61E-03
55	GO:0008295: spermidine biosynthetic process	1.61E-03
56	GO:1902347: response to strigolactone	1.61E-03
57	GO:0016117: carotenoid biosynthetic process	1.70E-03
58	GO:0080110: sporopollenin biosynthetic process	2.05E-03
59	GO:0010117: photoprotection	2.05E-03
60	GO:0046283: anthocyanin-containing compound metabolic process	2.05E-03
61	GO:0010236: plastoquinone biosynthetic process	2.05E-03
62	GO:0045038: protein import into chloroplast thylakoid membrane	2.05E-03
63	GO:1902183: regulation of shoot apical meristem development	2.05E-03
64	GO:0016123: xanthophyll biosynthetic process	2.05E-03
65	GO:0007059: chromosome segregation	2.12E-03
66	GO:0009959: negative gravitropism	2.52E-03
67	GO:0006555: methionine metabolic process	2.52E-03
68	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.52E-03
69	GO:1901371: regulation of leaf morphogenesis	2.52E-03
70	GO:0060918: auxin transport	2.52E-03
71	GO:0006559: L-phenylalanine catabolic process	2.52E-03
72	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.03E-03
73	GO:0042372: phylloquinone biosynthetic process	3.03E-03
74	GO:0010310: regulation of hydrogen peroxide metabolic process	3.03E-03
75	GO:0006955: immune response	3.58E-03
76	GO:0010050: vegetative phase change	3.58E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.58E-03
78	GO:0006400: tRNA modification	3.58E-03
79	GO:0051510: regulation of unidimensional cell growth	3.58E-03
80	GO:0042255: ribosome assembly	4.15E-03
81	GO:0006353: DNA-templated transcription, termination	4.15E-03
82	GO:0009850: auxin metabolic process	4.15E-03
83	GO:0045010: actin nucleation	4.15E-03
84	GO:0000105: histidine biosynthetic process	4.15E-03
85	GO:0018298: protein-chromophore linkage	4.57E-03
86	GO:0045490: pectin catabolic process	4.68E-03
87	GO:0006002: fructose 6-phosphate metabolic process	4.74E-03
88	GO:0022900: electron transport chain	4.74E-03
89	GO:0009657: plastid organization	4.74E-03
90	GO:0009451: RNA modification	4.82E-03
91	GO:0006098: pentose-phosphate shunt	5.37E-03
92	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.37E-03
93	GO:0010206: photosystem II repair	5.37E-03
94	GO:2000024: regulation of leaf development	5.37E-03
95	GO:0009638: phototropism	6.03E-03
96	GO:0035999: tetrahydrofolate interconversion	6.03E-03
97	GO:1900426: positive regulation of defense response to bacterium	6.03E-03
98	GO:0006839: mitochondrial transport	6.60E-03
99	GO:0009299: mRNA transcription	6.71E-03
100	GO:0006535: cysteine biosynthetic process from serine	6.71E-03
101	GO:0048829: root cap development	6.71E-03
102	GO:0006259: DNA metabolic process	6.71E-03
103	GO:0006265: DNA topological change	7.43E-03
104	GO:0006415: translational termination	7.43E-03
105	GO:0048765: root hair cell differentiation	7.43E-03
106	GO:0009658: chloroplast organization	8.16E-03
107	GO:0045037: protein import into chloroplast stroma	8.17E-03
108	GO:0009785: blue light signaling pathway	8.93E-03
109	GO:0030036: actin cytoskeleton organization	8.93E-03
110	GO:0010075: regulation of meristem growth	8.93E-03
111	GO:0009725: response to hormone	8.93E-03
112	GO:0006094: gluconeogenesis	8.93E-03
113	GO:0009664: plant-type cell wall organization	9.38E-03
114	GO:0009416: response to light stimulus	9.79E-03
115	GO:0080188: RNA-directed DNA methylation	1.05E-02
116	GO:0090351: seedling development	1.05E-02
117	GO:0006096: glycolytic process	1.19E-02
118	GO:0019344: cysteine biosynthetic process	1.22E-02
119	GO:0009944: polarity specification of adaxial/abaxial axis	1.22E-02
120	GO:0051017: actin filament bundle assembly	1.22E-02
121	GO:0006289: nucleotide-excision repair	1.22E-02
122	GO:2000377: regulation of reactive oxygen species metabolic process	1.22E-02
123	GO:0005992: trehalose biosynthetic process	1.22E-02
124	GO:0048316: seed development	1.23E-02
125	GO:0006418: tRNA aminoacylation for protein translation	1.31E-02
126	GO:0003333: amino acid transmembrane transport	1.40E-02
127	GO:0016998: cell wall macromolecule catabolic process	1.40E-02
128	GO:0048511: rhythmic process	1.40E-02
129	GO:0010431: seed maturation	1.40E-02
130	GO:0009814: defense response, incompatible interaction	1.50E-02
131	GO:0035428: hexose transmembrane transport	1.50E-02
132	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.59E-02
133	GO:0032259: methylation	1.67E-02
134	GO:0010584: pollen exine formation	1.69E-02
135	GO:0019722: calcium-mediated signaling	1.69E-02
136	GO:0010089: xylem development	1.69E-02
137	GO:0008033: tRNA processing	1.89E-02
138	GO:0010118: stomatal movement	1.89E-02
139	GO:0010268: brassinosteroid homeostasis	1.99E-02
140	GO:0009958: positive gravitropism	1.99E-02
141	GO:0010154: fruit development	1.99E-02
142	GO:0046323: glucose import	1.99E-02
143	GO:0009646: response to absence of light	2.10E-02
144	GO:0048544: recognition of pollen	2.10E-02
145	GO:0042752: regulation of circadian rhythm	2.10E-02
146	GO:0016132: brassinosteroid biosynthetic process	2.31E-02
147	GO:0010583: response to cyclopentenone	2.42E-02
148	GO:0016032: viral process	2.42E-02
149	GO:0032502: developmental process	2.42E-02
150	GO:0009630: gravitropism	2.42E-02
151	GO:0010090: trichome morphogenesis	2.54E-02
152	GO:0016125: sterol metabolic process	2.65E-02
153	GO:0009828: plant-type cell wall loosening	2.65E-02
154	GO:0009734: auxin-activated signaling pathway	2.71E-02
155	GO:0007267: cell-cell signaling	2.77E-02
156	GO:0000910: cytokinesis	2.89E-02
157	GO:0016126: sterol biosynthetic process	3.01E-02
158	GO:0009911: positive regulation of flower development	3.01E-02
159	GO:0001666: response to hypoxia	3.01E-02
160	GO:0010027: thylakoid membrane organization	3.01E-02
161	GO:0010411: xyloglucan metabolic process	3.38E-02
162	GO:0016311: dephosphorylation	3.50E-02
163	GO:0048481: plant ovule development	3.63E-02
164	GO:0009826: unidimensional cell growth	3.71E-02
165	GO:0000160: phosphorelay signal transduction system	3.76E-02
166	GO:0010311: lateral root formation	3.76E-02
167	GO:0006499: N-terminal protein myristoylation	3.89E-02
168	GO:0010218: response to far red light	3.89E-02
169	GO:0007568: aging	4.03E-02
170	GO:0006865: amino acid transport	4.16E-02
171	GO:0009853: photorespiration	4.30E-02
172	GO:0009637: response to blue light	4.30E-02
173	GO:0009723: response to ethylene	4.44E-02
174	GO:0080167: response to karrikin	4.76E-02
175	GO:0006631: fatty acid metabolic process	4.85E-02
176	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
5	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
6	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
7	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
12	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
13	GO:0030570: pectate lyase activity	1.13E-04
14	GO:0042834: peptidoglycan binding	2.34E-04
15	GO:0004813: alanine-tRNA ligase activity	2.34E-04
16	GO:0005290: L-histidine transmembrane transporter activity	2.34E-04
17	GO:0051996: squalene synthase activity	2.34E-04
18	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.34E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.34E-04
20	GO:0004830: tryptophan-tRNA ligase activity	2.34E-04
21	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	2.34E-04
22	GO:0003879: ATP phosphoribosyltransferase activity	2.34E-04
23	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	5.20E-04
24	GO:0004766: spermidine synthase activity	5.20E-04
25	GO:0000064: L-ornithine transmembrane transporter activity	5.20E-04
26	GO:0004829: threonine-tRNA ligase activity	5.20E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.20E-04
28	GO:0050017: L-3-cyanoalanine synthase activity	5.20E-04
29	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.20E-04
30	GO:0043425: bHLH transcription factor binding	5.20E-04
31	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	8.44E-04
32	GO:0045548: phenylalanine ammonia-lyase activity	8.44E-04
33	GO:0003913: DNA photolyase activity	8.44E-04
34	GO:0004557: alpha-galactosidase activity	8.44E-04
35	GO:0052692: raffinose alpha-galactosidase activity	8.44E-04
36	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.44E-04
37	GO:0015189: L-lysine transmembrane transporter activity	1.20E-03
38	GO:0015181: arginine transmembrane transporter activity	1.20E-03
39	GO:0016149: translation release factor activity, codon specific	1.20E-03
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.20E-03
41	GO:0009882: blue light photoreceptor activity	1.20E-03
42	GO:0004300: enoyl-CoA hydratase activity	1.20E-03
43	GO:0010011: auxin binding	1.61E-03
44	GO:0010328: auxin influx transmembrane transporter activity	1.61E-03
45	GO:0070628: proteasome binding	1.61E-03
46	GO:0004332: fructose-bisphosphate aldolase activity	2.52E-03
47	GO:0031593: polyubiquitin binding	2.52E-03
48	GO:2001070: starch binding	2.52E-03
49	GO:0004518: nuclease activity	2.60E-03
50	GO:0004124: cysteine synthase activity	3.03E-03
51	GO:0016829: lyase activity	3.43E-03
52	GO:0009881: photoreceptor activity	3.58E-03
53	GO:0008312: 7S RNA binding	4.15E-03
54	GO:0003723: RNA binding	4.49E-03
55	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.74E-03
56	GO:0005096: GTPase activator activity	4.80E-03
57	GO:0071949: FAD binding	5.37E-03
58	GO:0003747: translation release factor activity	5.37E-03
59	GO:0004743: pyruvate kinase activity	6.03E-03
60	GO:0030955: potassium ion binding	6.03E-03
61	GO:0004805: trehalose-phosphatase activity	6.71E-03
62	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.43E-03
63	GO:0004161: dimethylallyltranstransferase activity	7.43E-03
64	GO:0000049: tRNA binding	8.17E-03
65	GO:0003725: double-stranded RNA binding	8.93E-03
66	GO:0008081: phosphoric diester hydrolase activity	8.93E-03
67	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.72E-03
68	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.14E-02
69	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.14E-02
70	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.14E-02
71	GO:0043130: ubiquitin binding	1.22E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.49E-02
73	GO:0003727: single-stranded RNA binding	1.69E-02
74	GO:0004812: aminoacyl-tRNA ligase activity	1.79E-02
75	GO:0004519: endonuclease activity	1.96E-02
76	GO:0008536: Ran GTPase binding	1.99E-02
77	GO:0005355: glucose transmembrane transporter activity	2.10E-02
78	GO:0010181: FMN binding	2.10E-02
79	GO:0050662: coenzyme binding	2.10E-02
80	GO:0019901: protein kinase binding	2.20E-02
81	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.31E-02
82	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.32E-02
83	GO:0000156: phosphorelay response regulator activity	2.54E-02
84	GO:0051015: actin filament binding	2.54E-02
85	GO:0003684: damaged DNA binding	2.65E-02
86	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.77E-02
87	GO:0016597: amino acid binding	2.89E-02
88	GO:0042802: identical protein binding	3.16E-02
89	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.38E-02
90	GO:0008236: serine-type peptidase activity	3.50E-02
91	GO:0046872: metal ion binding	3.64E-02
92	GO:0008168: methyltransferase activity	3.71E-02
93	GO:0000287: magnesium ion binding	3.78E-02
94	GO:0004222: metalloendopeptidase activity	3.89E-02
95	GO:0004672: protein kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.19E-11
2	GO:0009570: chloroplast stroma	4.04E-04
3	GO:0080085: signal recognition particle, chloroplast targeting	5.20E-04
4	GO:0009574: preprophase band	6.54E-04
5	GO:0016605: PML body	8.44E-04
6	GO:0032432: actin filament bundle	1.20E-03
7	GO:0046658: anchored component of plasma membrane	1.29E-03
8	GO:0031225: anchored component of membrane	1.51E-03
9	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.61E-03
10	GO:0031209: SCAR complex	2.52E-03
11	GO:0005655: nucleolar ribonuclease P complex	3.03E-03
12	GO:0030529: intracellular ribonucleoprotein complex	3.51E-03
13	GO:0009986: cell surface	3.58E-03
14	GO:0009505: plant-type cell wall	3.95E-03
15	GO:0009535: chloroplast thylakoid membrane	4.19E-03
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.74E-03
17	GO:0016604: nuclear body	6.03E-03
18	GO:0005884: actin filament	7.43E-03
19	GO:0000311: plastid large ribosomal subunit	8.17E-03
20	GO:0005578: proteinaceous extracellular matrix	8.93E-03
21	GO:0030176: integral component of endoplasmic reticulum membrane	1.05E-02
22	GO:0031969: chloroplast membrane	1.07E-02
23	GO:0042651: thylakoid membrane	1.31E-02
24	GO:0009532: plastid stroma	1.40E-02
25	GO:0005886: plasma membrane	2.67E-02
26	GO:0009295: nucleoid	2.77E-02
27	GO:0019005: SCF ubiquitin ligase complex	3.63E-02
28	GO:0015934: large ribosomal subunit	4.03E-02
29	GO:0005874: microtubule	4.60E-02
30	GO:0031977: thylakoid lumen	4.85E-02