Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G37240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010068: protoderm histogenesis0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:1905177: tracheary element differentiation0.00E+00
4GO:0006114: glycerol biosynthetic process0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
7GO:0070125: mitochondrial translational elongation0.00E+00
8GO:0070979: protein K11-linked ubiquitination0.00E+00
9GO:1905421: regulation of plant organ morphogenesis0.00E+00
10GO:2000505: regulation of energy homeostasis0.00E+00
11GO:0010081: regulation of inflorescence meristem growth0.00E+00
12GO:0030155: regulation of cell adhesion0.00E+00
13GO:0090706: specification of plant organ position0.00E+00
14GO:0090071: negative regulation of ribosome biogenesis0.00E+00
15GO:0045038: protein import into chloroplast thylakoid membrane2.32E-06
16GO:0016123: xanthophyll biosynthetic process2.32E-06
17GO:0010158: abaxial cell fate specification2.32E-06
18GO:0016117: carotenoid biosynthetic process3.49E-05
19GO:2001141: regulation of RNA biosynthetic process5.86E-05
20GO:0045037: protein import into chloroplast stroma9.38E-05
21GO:0010207: photosystem II assembly1.37E-04
22GO:0010027: thylakoid membrane organization1.41E-04
23GO:1902183: regulation of shoot apical meristem development1.59E-04
24GO:0009944: polarity specification of adaxial/abaxial axis2.20E-04
25GO:0070509: calcium ion import4.18E-04
26GO:0043266: regulation of potassium ion transport4.18E-04
27GO:0010080: regulation of floral meristem growth4.18E-04
28GO:0043087: regulation of GTPase activity4.18E-04
29GO:2000021: regulation of ion homeostasis4.18E-04
30GO:0006436: tryptophanyl-tRNA aminoacylation4.18E-04
31GO:0051247: positive regulation of protein metabolic process4.18E-04
32GO:0000066: mitochondrial ornithine transport4.18E-04
33GO:1902458: positive regulation of stomatal opening4.18E-04
34GO:2000905: negative regulation of starch metabolic process4.18E-04
35GO:0010450: inflorescence meristem growth4.18E-04
36GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.18E-04
37GO:0009090: homoserine biosynthetic process4.18E-04
38GO:0006353: DNA-templated transcription, termination4.94E-04
39GO:0048564: photosystem I assembly4.94E-04
40GO:0071482: cellular response to light stimulus6.03E-04
41GO:2000024: regulation of leaf development7.22E-04
42GO:0000373: Group II intron splicing7.22E-04
43GO:0009086: methionine biosynthetic process8.52E-04
44GO:1900865: chloroplast RNA modification8.52E-04
45GO:0060359: response to ammonium ion9.05E-04
46GO:0048255: mRNA stabilization9.05E-04
47GO:0001736: establishment of planar polarity9.05E-04
48GO:0009786: regulation of asymmetric cell division9.05E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process9.05E-04
50GO:2000123: positive regulation of stomatal complex development9.05E-04
51GO:0010275: NAD(P)H dehydrogenase complex assembly9.05E-04
52GO:0048829: root cap development9.91E-04
53GO:0006352: DNA-templated transcription, initiation1.14E-03
54GO:0010582: floral meristem determinacy1.30E-03
55GO:0031145: anaphase-promoting complex-dependent catabolic process1.47E-03
56GO:0010623: programmed cell death involved in cell development1.47E-03
57GO:0080055: low-affinity nitrate transport1.47E-03
58GO:0010022: meristem determinacy1.47E-03
59GO:0006696: ergosterol biosynthetic process1.47E-03
60GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.47E-03
61GO:0043157: response to cation stress1.47E-03
62GO:0045165: cell fate commitment1.47E-03
63GO:0048281: inflorescence morphogenesis1.47E-03
64GO:0048586: regulation of long-day photoperiodism, flowering1.47E-03
65GO:0009725: response to hormone1.48E-03
66GO:0006094: gluconeogenesis1.48E-03
67GO:0010311: lateral root formation1.72E-03
68GO:0009793: embryo development ending in seed dormancy1.75E-03
69GO:0070588: calcium ion transmembrane transport1.87E-03
70GO:0048645: animal organ formation2.13E-03
71GO:0046739: transport of virus in multicellular host2.13E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.13E-03
73GO:1901332: negative regulation of lateral root development2.13E-03
74GO:0042989: sequestering of actin monomers2.13E-03
75GO:0010148: transpiration2.13E-03
76GO:1990019: protein storage vacuole organization2.13E-03
77GO:0016556: mRNA modification2.13E-03
78GO:0009067: aspartate family amino acid biosynthetic process2.13E-03
79GO:0051513: regulation of monopolar cell growth2.13E-03
80GO:0007231: osmosensory signaling pathway2.13E-03
81GO:0030071: regulation of mitotic metaphase/anaphase transition2.13E-03
82GO:0051639: actin filament network formation2.13E-03
83GO:0034059: response to anoxia2.13E-03
84GO:0010239: chloroplast mRNA processing2.13E-03
85GO:0006839: mitochondrial transport2.58E-03
86GO:0010431: seed maturation2.80E-03
87GO:2000038: regulation of stomatal complex development2.86E-03
88GO:0010508: positive regulation of autophagy2.86E-03
89GO:0008295: spermidine biosynthetic process2.86E-03
90GO:0051781: positive regulation of cell division2.86E-03
91GO:0051764: actin crosslink formation2.86E-03
92GO:0006661: phosphatidylinositol biosynthetic process2.86E-03
93GO:0009765: photosynthesis, light harvesting2.86E-03
94GO:2000306: positive regulation of photomorphogenesis2.86E-03
95GO:0033500: carbohydrate homeostasis2.86E-03
96GO:0006730: one-carbon metabolic process3.07E-03
97GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.35E-03
98GO:0030041: actin filament polymerization3.66E-03
99GO:0016120: carotene biosynthetic process3.66E-03
100GO:0010236: plastoquinone biosynthetic process3.66E-03
101GO:0009107: lipoate biosynthetic process3.66E-03
102GO:0000304: response to singlet oxygen3.66E-03
103GO:0080110: sporopollenin biosynthetic process3.66E-03
104GO:0032876: negative regulation of DNA endoreduplication3.66E-03
105GO:0010375: stomatal complex patterning3.66E-03
106GO:0009664: plant-type cell wall organization4.04E-03
107GO:0016554: cytidine to uridine editing4.52E-03
108GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.52E-03
109GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.52E-03
110GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.52E-03
111GO:0009959: negative gravitropism4.52E-03
112GO:0006555: methionine metabolic process4.52E-03
113GO:0006655: phosphatidylglycerol biosynthetic process4.52E-03
114GO:0010154: fruit development4.60E-03
115GO:0017148: negative regulation of translation5.46E-03
116GO:0030488: tRNA methylation5.46E-03
117GO:1901259: chloroplast rRNA processing5.46E-03
118GO:0009088: threonine biosynthetic process5.46E-03
119GO:0071333: cellular response to glucose stimulus5.46E-03
120GO:0042372: phylloquinone biosynthetic process5.46E-03
121GO:0006096: glycolytic process5.48E-03
122GO:0048316: seed development5.71E-03
123GO:0009658: chloroplast organization6.03E-03
124GO:0032502: developmental process6.08E-03
125GO:0010050: vegetative phase change6.45E-03
126GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.45E-03
127GO:0051510: regulation of unidimensional cell growth6.45E-03
128GO:0010103: stomatal complex morphogenesis6.45E-03
129GO:0006955: immune response6.45E-03
130GO:0048528: post-embryonic root development6.45E-03
131GO:0070370: cellular heat acclimation6.45E-03
132GO:0009828: plant-type cell wall loosening6.90E-03
133GO:0007267: cell-cell signaling7.34E-03
134GO:0009850: auxin metabolic process7.50E-03
135GO:0006605: protein targeting7.50E-03
136GO:0032875: regulation of DNA endoreduplication7.50E-03
137GO:0042255: ribosome assembly7.50E-03
138GO:0046620: regulation of organ growth7.50E-03
139GO:2000070: regulation of response to water deprivation7.50E-03
140GO:0009734: auxin-activated signaling pathway7.59E-03
141GO:0007186: G-protein coupled receptor signaling pathway8.61E-03
142GO:0010497: plasmodesmata-mediated intercellular transport8.61E-03
143GO:0009657: plastid organization8.61E-03
144GO:0032544: plastid translation8.61E-03
145GO:0010093: specification of floral organ identity8.61E-03
146GO:0015996: chlorophyll catabolic process8.61E-03
147GO:0001558: regulation of cell growth8.61E-03
148GO:0015995: chlorophyll biosynthetic process9.73E-03
149GO:0006098: pentose-phosphate shunt9.78E-03
150GO:0090305: nucleic acid phosphodiester bond hydrolysis9.78E-03
151GO:0010206: photosystem II repair9.78E-03
152GO:0031425: chloroplast RNA processing1.10E-02
153GO:0006779: porphyrin-containing compound biosynthetic process1.10E-02
154GO:0042761: very long-chain fatty acid biosynthetic process1.10E-02
155GO:0035999: tetrahydrofolate interconversion1.10E-02
156GO:0006535: cysteine biosynthetic process from serine1.23E-02
157GO:0006782: protoporphyrinogen IX biosynthetic process1.23E-02
158GO:0009641: shade avoidance1.23E-02
159GO:0006949: syncytium formation1.23E-02
160GO:0010629: negative regulation of gene expression1.23E-02
161GO:0009299: mRNA transcription1.23E-02
162GO:0040008: regulation of growth1.32E-02
163GO:0006415: translational termination1.36E-02
164GO:0048765: root hair cell differentiation1.36E-02
165GO:0006816: calcium ion transport1.36E-02
166GO:0009089: lysine biosynthetic process via diaminopimelate1.36E-02
167GO:0071555: cell wall organization1.37E-02
168GO:0009451: RNA modification1.44E-02
169GO:0016024: CDP-diacylglycerol biosynthetic process1.50E-02
170GO:0007166: cell surface receptor signaling pathway1.65E-02
171GO:0009733: response to auxin1.71E-02
172GO:0009926: auxin polar transport1.77E-02
173GO:0009933: meristem structural organization1.79E-02
174GO:0042546: cell wall biogenesis1.84E-02
175GO:0090351: seedling development1.94E-02
176GO:0009965: leaf morphogenesis1.99E-02
177GO:0010025: wax biosynthetic process2.09E-02
178GO:0051017: actin filament bundle assembly2.25E-02
179GO:0007010: cytoskeleton organization2.25E-02
180GO:0019344: cysteine biosynthetic process2.25E-02
181GO:0009826: unidimensional cell growth2.31E-02
182GO:0006418: tRNA aminoacylation for protein translation2.42E-02
183GO:0051302: regulation of cell division2.42E-02
184GO:0008299: isoprenoid biosynthetic process2.42E-02
185GO:0003333: amino acid transmembrane transport2.59E-02
186GO:0016998: cell wall macromolecule catabolic process2.59E-02
187GO:0048511: rhythmic process2.59E-02
188GO:0031408: oxylipin biosynthetic process2.59E-02
189GO:0035428: hexose transmembrane transport2.76E-02
190GO:0001944: vasculature development2.94E-02
191GO:0006284: base-excision repair3.11E-02
192GO:0019722: calcium-mediated signaling3.11E-02
193GO:0009561: megagametogenesis3.11E-02
194GO:0009306: protein secretion3.11E-02
195GO:0010089: xylem development3.11E-02
196GO:0010584: pollen exine formation3.11E-02
197GO:0080167: response to karrikin3.17E-02
198GO:0009740: gibberellic acid mediated signaling pathway3.21E-02
199GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.31E-02
200GO:0042335: cuticle development3.49E-02
201GO:0008033: tRNA processing3.49E-02
202GO:0034220: ion transmembrane transport3.49E-02
203GO:0000413: protein peptidyl-prolyl isomerization3.49E-02
204GO:0010087: phloem or xylem histogenesis3.49E-02
205GO:0009742: brassinosteroid mediated signaling pathway3.61E-02
206GO:0045489: pectin biosynthetic process3.68E-02
207GO:0010182: sugar mediated signaling pathway3.68E-02
208GO:0048868: pollen tube development3.68E-02
209GO:0046323: glucose import3.68E-02
210GO:0009958: positive gravitropism3.68E-02
211GO:0048544: recognition of pollen3.87E-02
212GO:0007018: microtubule-based movement3.87E-02
213GO:0042752: regulation of circadian rhythm3.87E-02
214GO:0008654: phospholipid biosynthetic process4.07E-02
215GO:0000302: response to reactive oxygen species4.27E-02
216GO:0016032: viral process4.48E-02
217GO:0009630: gravitropism4.48E-02
218GO:0010583: response to cyclopentenone4.48E-02
219GO:0009845: seed germination4.59E-02
220GO:0007275: multicellular organism development4.82E-02
221GO:0006914: autophagy4.89E-02
RankGO TermAdjusted P value
1GO:0050613: delta14-sterol reductase activity0.00E+00
2GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0010355: homogentisate farnesyltransferase activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0043136: glycerol-3-phosphatase activity0.00E+00
10GO:0000121: glycerol-1-phosphatase activity0.00E+00
11GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
12GO:0010357: homogentisate solanesyltransferase activity0.00E+00
13GO:0019199: transmembrane receptor protein kinase activity1.03E-04
14GO:0001053: plastid sigma factor activity1.03E-04
15GO:0016987: sigma factor activity1.03E-04
16GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity4.18E-04
17GO:0005290: L-histidine transmembrane transporter activity4.18E-04
18GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity4.18E-04
19GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity4.18E-04
20GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.18E-04
21GO:0051996: squalene synthase activity4.18E-04
22GO:0004830: tryptophan-tRNA ligase activity4.18E-04
23GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity4.18E-04
24GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.18E-04
25GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.18E-04
26GO:0042834: peptidoglycan binding4.18E-04
27GO:0004802: transketolase activity9.05E-04
28GO:0000064: L-ornithine transmembrane transporter activity9.05E-04
29GO:0004412: homoserine dehydrogenase activity9.05E-04
30GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.05E-04
31GO:0048531: beta-1,3-galactosyltransferase activity9.05E-04
32GO:0050017: L-3-cyanoalanine synthase activity9.05E-04
33GO:0010291: carotene beta-ring hydroxylase activity9.05E-04
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.05E-04
35GO:0043425: bHLH transcription factor binding9.05E-04
36GO:0004766: spermidine synthase activity9.05E-04
37GO:0016992: lipoate synthase activity1.47E-03
38GO:0003913: DNA photolyase activity1.47E-03
39GO:0004557: alpha-galactosidase activity1.47E-03
40GO:0070402: NADPH binding1.47E-03
41GO:0052692: raffinose alpha-galactosidase activity1.47E-03
42GO:0080054: low-affinity nitrate transmembrane transporter activity1.47E-03
43GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups1.47E-03
44GO:0031072: heat shock protein binding1.48E-03
45GO:0005262: calcium channel activity1.48E-03
46GO:0016149: translation release factor activity, codon specific2.13E-03
47GO:0015181: arginine transmembrane transporter activity2.13E-03
48GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.13E-03
49GO:0043023: ribosomal large subunit binding2.13E-03
50GO:0004300: enoyl-CoA hydratase activity2.13E-03
51GO:0001872: (1->3)-beta-D-glucan binding2.13E-03
52GO:0015189: L-lysine transmembrane transporter activity2.13E-03
53GO:0004072: aspartate kinase activity2.13E-03
54GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.78E-03
55GO:0010328: auxin influx transmembrane transporter activity2.86E-03
56GO:0042277: peptide binding2.86E-03
57GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.86E-03
58GO:0010011: auxin binding2.86E-03
59GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.86E-03
60GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.86E-03
61GO:0030570: pectate lyase activity3.35E-03
62GO:0003785: actin monomer binding3.66E-03
63GO:0008725: DNA-3-methyladenine glycosylase activity3.66E-03
64GO:0004462: lactoylglutathione lyase activity4.52E-03
65GO:0004130: cytochrome-c peroxidase activity4.52E-03
66GO:0016688: L-ascorbate peroxidase activity4.52E-03
67GO:0004332: fructose-bisphosphate aldolase activity4.52E-03
68GO:0004519: endonuclease activity4.83E-03
69GO:0003723: RNA binding4.84E-03
70GO:0004124: cysteine synthase activity5.46E-03
71GO:0004017: adenylate kinase activity5.46E-03
72GO:0009881: photoreceptor activity6.45E-03
73GO:0043022: ribosome binding7.50E-03
74GO:0008312: 7S RNA binding7.50E-03
75GO:0003747: translation release factor activity9.78E-03
76GO:0016829: lyase activity1.02E-02
77GO:0030955: potassium ion binding1.10E-02
78GO:0004743: pyruvate kinase activity1.10E-02
79GO:0005096: GTPase activator activity1.13E-02
80GO:0005089: Rho guanyl-nucleotide exchange factor activity1.36E-02
81GO:0004161: dimethylallyltranstransferase activity1.36E-02
82GO:0008081: phosphoric diester hydrolase activity1.64E-02
83GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.79E-02
84GO:0008266: poly(U) RNA binding1.79E-02
85GO:0035091: phosphatidylinositol binding1.92E-02
86GO:0008146: sulfotransferase activity1.94E-02
87GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.07E-02
88GO:0051536: iron-sulfur cluster binding2.25E-02
89GO:0005528: FK506 binding2.25E-02
90GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.39E-02
91GO:0043424: protein histidine kinase binding2.42E-02
92GO:0003690: double-stranded DNA binding2.48E-02
93GO:0003727: single-stranded RNA binding3.11E-02
94GO:0004812: aminoacyl-tRNA ligase activity3.30E-02
95GO:0051082: unfolded protein binding3.40E-02
96GO:0050662: coenzyme binding3.87E-02
97GO:0010181: FMN binding3.87E-02
98GO:0016853: isomerase activity3.87E-02
99GO:0005355: glucose transmembrane transporter activity3.87E-02
100GO:0005515: protein binding3.88E-02
101GO:0019901: protein kinase binding4.07E-02
102GO:0004872: receptor activity4.07E-02
103GO:0019843: rRNA binding4.25E-02
104GO:0016762: xyloglucan:xyloglucosyl transferase activity4.27E-02
105GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.36E-02
106GO:0004518: nuclease activity4.48E-02
107GO:0051015: actin filament binding4.68E-02
108GO:0030170: pyridoxal phosphate binding4.71E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast9.12E-27
2GO:0009570: chloroplast stroma4.81E-10
3GO:0009535: chloroplast thylakoid membrane5.34E-07
4GO:0009941: chloroplast envelope2.77E-06
5GO:0080085: signal recognition particle, chloroplast targeting7.79E-06
6GO:0031969: chloroplast membrane1.02E-04
7GO:0009579: thylakoid1.12E-04
8GO:0009543: chloroplast thylakoid lumen3.71E-04
9GO:0009986: cell surface3.95E-04
10GO:0031977: thylakoid lumen4.38E-04
11GO:0009534: chloroplast thylakoid4.58E-04
12GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.03E-04
13GO:0030139: endocytic vesicle1.47E-03
14GO:0009528: plastid inner membrane1.47E-03
15GO:0005623: cell1.97E-03
16GO:0032585: multivesicular body membrane2.13E-03
17GO:0032432: actin filament bundle2.13E-03
18GO:0009654: photosystem II oxygen evolving complex2.55E-03
19GO:0031225: anchored component of membrane2.70E-03
20GO:0009527: plastid outer membrane2.86E-03
21GO:0046658: anchored component of plasma membrane4.75E-03
22GO:0019898: extrinsic component of membrane5.31E-03
23GO:0042807: central vacuole6.45E-03
24GO:0009533: chloroplast stromal thylakoid6.45E-03
25GO:0010319: stromule7.34E-03
26GO:0030529: intracellular ribonucleoprotein complex8.25E-03
27GO:0000326: protein storage vacuole8.61E-03
28GO:0005680: anaphase-promoting complex9.78E-03
29GO:0016604: nuclear body1.10E-02
30GO:0005886: plasma membrane1.36E-02
31GO:0005884: actin filament1.36E-02
32GO:0000311: plastid large ribosomal subunit1.50E-02
33GO:0009574: preprophase band1.64E-02
34GO:0005938: cell cortex1.64E-02
35GO:0005578: proteinaceous extracellular matrix1.64E-02
36GO:0030176: integral component of endoplasmic reticulum membrane1.94E-02
37GO:0043234: protein complex2.09E-02
38GO:0042651: thylakoid membrane2.42E-02
39GO:0009532: plastid stroma2.59E-02
40GO:0015629: actin cytoskeleton2.94E-02
41GO:0005871: kinesin complex3.30E-02
42GO:0009706: chloroplast inner membrane3.40E-02
43GO:0010287: plastoglobule4.03E-02
44GO:0005743: mitochondrial inner membrane4.68E-02
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Gene type



Gene DE type