co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G36660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0043488: regulation of mRNA stability	0.00E+00
4	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
5	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
7	GO:0015882: L-ascorbic acid transport	0.00E+00
8	GO:0090279: regulation of calcium ion import	0.00E+00
9	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0008298: intracellular mRNA localization	0.00E+00
12	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
13	GO:0071474: cellular hyperosmotic response	0.00E+00
14	GO:0009658: chloroplast organization	2.40E-06
15	GO:0005977: glycogen metabolic process	7.70E-06
16	GO:0010239: chloroplast mRNA processing	1.76E-05
17	GO:0010021: amylopectin biosynthetic process	3.23E-05
18	GO:0019252: starch biosynthetic process	1.79E-04
19	GO:0070574: cadmium ion transmembrane transport	2.11E-04
20	GO:0010028: xanthophyll cycle	2.11E-04
21	GO:0034337: RNA folding	2.11E-04
22	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.11E-04
23	GO:0000476: maturation of 4.5S rRNA	2.11E-04
24	GO:0000967: rRNA 5'-end processing	2.11E-04
25	GO:0051775: response to redox state	2.11E-04
26	GO:0031426: polycistronic mRNA processing	2.11E-04
27	GO:0043266: regulation of potassium ion transport	2.11E-04
28	GO:0000481: maturation of 5S rRNA	2.11E-04
29	GO:2000021: regulation of ion homeostasis	2.11E-04
30	GO:0032502: developmental process	2.16E-04
31	GO:0019684: photosynthesis, light reaction	4.36E-04
32	GO:0051262: protein tetramerization	4.71E-04
33	GO:0034470: ncRNA processing	4.71E-04
34	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.71E-04
35	GO:0060359: response to ammonium ion	4.71E-04
36	GO:1900871: chloroplast mRNA modification	4.71E-04
37	GO:0010541: acropetal auxin transport	4.71E-04
38	GO:0000256: allantoin catabolic process	4.71E-04
39	GO:1904143: positive regulation of carotenoid biosynthetic process	4.71E-04
40	GO:0009767: photosynthetic electron transport chain	5.67E-04
41	GO:0043157: response to cation stress	7.67E-04
42	GO:0010160: formation of animal organ boundary	7.67E-04
43	GO:0006954: inflammatory response	7.67E-04
44	GO:0010136: ureide catabolic process	7.67E-04
45	GO:0031145: anaphase-promoting complex-dependent catabolic process	7.67E-04
46	GO:0015940: pantothenate biosynthetic process	7.67E-04
47	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.09E-03
48	GO:0006107: oxaloacetate metabolic process	1.09E-03
49	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.09E-03
50	GO:0006145: purine nucleobase catabolic process	1.09E-03
51	GO:0051016: barbed-end actin filament capping	1.09E-03
52	GO:0033014: tetrapyrrole biosynthetic process	1.09E-03
53	GO:0009226: nucleotide-sugar biosynthetic process	1.09E-03
54	GO:0010731: protein glutathionylation	1.09E-03
55	GO:0016556: mRNA modification	1.09E-03
56	GO:2001141: regulation of RNA biosynthetic process	1.09E-03
57	GO:0090308: regulation of methylation-dependent chromatin silencing	1.09E-03
58	GO:0048443: stamen development	1.36E-03
59	GO:0048442: sepal development	1.45E-03
60	GO:0006661: phosphatidylinositol biosynthetic process	1.45E-03
61	GO:0009765: photosynthesis, light harvesting	1.45E-03
62	GO:0006021: inositol biosynthetic process	1.45E-03
63	GO:0006734: NADH metabolic process	1.45E-03
64	GO:0009107: lipoate biosynthetic process	1.85E-03
65	GO:0032876: negative regulation of DNA endoreduplication	1.85E-03
66	GO:0080110: sporopollenin biosynthetic process	1.85E-03
67	GO:0043097: pyrimidine nucleoside salvage	1.85E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	1.85E-03
69	GO:0015979: photosynthesis	2.21E-03
70	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.28E-03
71	GO:0009959: negative gravitropism	2.28E-03
72	GO:0006206: pyrimidine nucleobase metabolic process	2.28E-03
73	GO:0032973: amino acid export	2.28E-03
74	GO:0060918: auxin transport	2.28E-03
75	GO:0046855: inositol phosphate dephosphorylation	2.28E-03
76	GO:0050665: hydrogen peroxide biosynthetic process	2.28E-03
77	GO:1901259: chloroplast rRNA processing	2.74E-03
78	GO:0010076: maintenance of floral meristem identity	2.74E-03
79	GO:0009854: oxidative photosynthetic carbon pathway	2.74E-03
80	GO:0010019: chloroplast-nucleus signaling pathway	2.74E-03
81	GO:0009395: phospholipid catabolic process	3.23E-03
82	GO:0043090: amino acid import	3.23E-03
83	GO:0051693: actin filament capping	3.23E-03
84	GO:0006400: tRNA modification	3.23E-03
85	GO:0015995: chlorophyll biosynthetic process	3.56E-03
86	GO:0007155: cell adhesion	3.74E-03
87	GO:0048564: photosystem I assembly	3.74E-03
88	GO:0042255: ribosome assembly	3.74E-03
89	GO:0006353: DNA-templated transcription, termination	3.74E-03
90	GO:0006875: cellular metal ion homeostasis	3.74E-03
91	GO:0009690: cytokinin metabolic process	3.74E-03
92	GO:0032875: regulation of DNA endoreduplication	3.74E-03
93	GO:0032508: DNA duplex unwinding	3.74E-03
94	GO:0018298: protein-chromophore linkage	3.94E-03
95	GO:0017004: cytochrome complex assembly	4.29E-03
96	GO:0071482: cellular response to light stimulus	4.29E-03
97	GO:0010204: defense response signaling pathway, resistance gene-independent	4.29E-03
98	GO:0032544: plastid translation	4.29E-03
99	GO:0008380: RNA splicing	4.84E-03
100	GO:0098656: anion transmembrane transport	4.85E-03
101	GO:0009051: pentose-phosphate shunt, oxidative branch	4.85E-03
102	GO:0048507: meristem development	4.85E-03
103	GO:0080144: amino acid homeostasis	4.85E-03
104	GO:0006783: heme biosynthetic process	4.85E-03
105	GO:0006779: porphyrin-containing compound biosynthetic process	5.44E-03
106	GO:0009098: leucine biosynthetic process	5.44E-03
107	GO:0048441: petal development	6.06E-03
108	GO:0010216: maintenance of DNA methylation	6.69E-03
109	GO:0009089: lysine biosynthetic process via diaminopimelate	6.69E-03
110	GO:0006415: translational termination	6.69E-03
111	GO:0043085: positive regulation of catalytic activity	6.69E-03
112	GO:0006352: DNA-templated transcription, initiation	6.69E-03
113	GO:0018119: peptidyl-cysteine S-nitrosylation	6.69E-03
114	GO:0008361: regulation of cell size	7.36E-03
115	GO:0006790: sulfur compound metabolic process	7.36E-03
116	GO:0009416: response to light stimulus	7.80E-03
117	GO:0009718: anthocyanin-containing compound biosynthetic process	8.04E-03
118	GO:0006108: malate metabolic process	8.04E-03
119	GO:0030036: actin cytoskeleton organization	8.04E-03
120	GO:0042538: hyperosmotic salinity response	8.07E-03
121	GO:0010540: basipetal auxin transport	8.75E-03
122	GO:0048440: carpel development	8.75E-03
123	GO:0010207: photosystem II assembly	8.75E-03
124	GO:0019253: reductive pentose-phosphate cycle	8.75E-03
125	GO:0007015: actin filament organization	8.75E-03
126	GO:0019853: L-ascorbic acid biosynthetic process	9.48E-03
127	GO:0046854: phosphatidylinositol phosphorylation	9.48E-03
128	GO:0055085: transmembrane transport	1.12E-02
129	GO:0009409: response to cold	1.13E-02
130	GO:0008299: isoprenoid biosynthetic process	1.18E-02
131	GO:0007017: microtubule-based process	1.18E-02
132	GO:0019748: secondary metabolic process	1.34E-02
133	GO:0006730: one-carbon metabolic process	1.34E-02
134	GO:0005975: carbohydrate metabolic process	1.37E-02
135	GO:0010584: pollen exine formation	1.52E-02
136	GO:0008033: tRNA processing	1.70E-02
137	GO:0010087: phloem or xylem histogenesis	1.70E-02
138	GO:0009741: response to brassinosteroid	1.79E-02
139	GO:0045489: pectin biosynthetic process	1.79E-02
140	GO:0009958: positive gravitropism	1.79E-02
141	GO:0009646: response to absence of light	1.88E-02
142	GO:0055072: iron ion homeostasis	1.98E-02
143	GO:0009791: post-embryonic development	1.98E-02
144	GO:0008654: phospholipid biosynthetic process	1.98E-02
145	GO:0009630: gravitropism	2.18E-02
146	GO:0019761: glucosinolate biosynthetic process	2.18E-02
147	GO:0009451: RNA modification	2.19E-02
148	GO:0009639: response to red or far red light	2.38E-02
149	GO:0016126: sterol biosynthetic process	2.70E-02
150	GO:0010027: thylakoid membrane organization	2.70E-02
151	GO:0016311: dephosphorylation	3.15E-02
152	GO:0010218: response to far red light	3.50E-02
153	GO:0048527: lateral root development	3.62E-02
154	GO:0009637: response to blue light	3.86E-02
155	GO:0006810: transport	3.95E-02
156	GO:0006099: tricarboxylic acid cycle	3.99E-02
157	GO:0080167: response to karrikin	4.11E-02
158	GO:0006839: mitochondrial transport	4.24E-02
159	GO:0030001: metal ion transport	4.24E-02
160	GO:0006508: proteolysis	4.47E-02
161	GO:0051707: response to other organism	4.63E-02
162	GO:0008283: cell proliferation	4.63E-02
163	GO:0009640: photomorphogenesis	4.63E-02
164	GO:0009926: auxin polar transport	4.63E-02
165	GO:0042546: cell wall biogenesis	4.76E-02
166	GO:0009644: response to high light intensity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
7	GO:0019156: isoamylase activity	2.10E-06
8	GO:0019899: enzyme binding	2.15E-06
9	GO:0043495: protein anchor	3.23E-05
10	GO:0003993: acid phosphatase activity	6.30E-05
11	GO:0004556: alpha-amylase activity	7.64E-05
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.11E-04
13	GO:0046906: tetrapyrrole binding	2.11E-04
14	GO:0005227: calcium activated cation channel activity	2.11E-04
15	GO:0004451: isocitrate lyase activity	2.11E-04
16	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.11E-04
17	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.11E-04
18	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.11E-04
19	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.11E-04
20	GO:0004325: ferrochelatase activity	2.11E-04
21	GO:0008746: NAD(P)+ transhydrogenase activity	2.11E-04
22	GO:0080041: ADP-ribose pyrophosphohydrolase activity	4.71E-04
23	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.71E-04
24	GO:0052832: inositol monophosphate 3-phosphatase activity	4.71E-04
25	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.71E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	4.71E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	4.71E-04
28	GO:0048531: beta-1,3-galactosyltransferase activity	4.71E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.71E-04
30	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.71E-04
31	GO:0016992: lipoate synthase activity	7.67E-04
32	GO:0003913: DNA photolyase activity	7.67E-04
33	GO:0004848: ureidoglycolate hydrolase activity	7.67E-04
34	GO:0070402: NADPH binding	7.67E-04
35	GO:0017057: 6-phosphogluconolactonase activity	1.09E-03
36	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.09E-03
37	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.09E-03
38	GO:0048027: mRNA 5'-UTR binding	1.09E-03
39	GO:0015086: cadmium ion transmembrane transporter activity	1.09E-03
40	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.09E-03
41	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.09E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	1.25E-03
43	GO:0001053: plastid sigma factor activity	1.45E-03
44	GO:0004045: aminoacyl-tRNA hydrolase activity	1.45E-03
45	GO:0080032: methyl jasmonate esterase activity	1.45E-03
46	GO:0016987: sigma factor activity	1.45E-03
47	GO:0009011: starch synthase activity	1.45E-03
48	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.45E-03
49	GO:0008891: glycolate oxidase activity	1.45E-03
50	GO:0003824: catalytic activity	2.26E-03
51	GO:0080030: methyl indole-3-acetate esterase activity	2.28E-03
52	GO:0016615: malate dehydrogenase activity	2.28E-03
53	GO:0008200: ion channel inhibitor activity	2.28E-03
54	GO:0008195: phosphatidate phosphatase activity	2.74E-03
55	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.74E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.74E-03
57	GO:0030060: L-malate dehydrogenase activity	2.74E-03
58	GO:0004849: uridine kinase activity	2.74E-03
59	GO:0005261: cation channel activity	2.74E-03
60	GO:0003730: mRNA 3'-UTR binding	2.74E-03
61	GO:0016168: chlorophyll binding	3.20E-03
62	GO:0015103: inorganic anion transmembrane transporter activity	3.23E-03
63	GO:0016491: oxidoreductase activity	3.24E-03
64	GO:0004222: metalloendopeptidase activity	4.35E-03
65	GO:0003747: translation release factor activity	4.85E-03
66	GO:0042802: identical protein binding	5.25E-03
67	GO:0004185: serine-type carboxypeptidase activity	6.43E-03
68	GO:0009982: pseudouridine synthase activity	8.04E-03
69	GO:0010329: auxin efflux transmembrane transporter activity	8.04E-03
70	GO:0008081: phosphoric diester hydrolase activity	8.04E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	8.04E-03
72	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.75E-03
73	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.06E-02
74	GO:0005528: FK506 binding	1.10E-02
75	GO:0008514: organic anion transmembrane transporter activity	1.52E-02
76	GO:0003727: single-stranded RNA binding	1.52E-02
77	GO:0019843: rRNA binding	1.55E-02
78	GO:0004519: endonuclease activity	1.62E-02
79	GO:0046873: metal ion transmembrane transporter activity	1.79E-02
80	GO:0008080: N-acetyltransferase activity	1.79E-02
81	GO:0003723: RNA binding	1.80E-02
82	GO:0016853: isomerase activity	1.88E-02
83	GO:0010181: FMN binding	1.88E-02
84	GO:0050662: coenzyme binding	1.88E-02
85	GO:0048038: quinone binding	2.08E-02
86	GO:0008237: metallopeptidase activity	2.49E-02
87	GO:0005200: structural constituent of cytoskeleton	2.49E-02
88	GO:0004721: phosphoprotein phosphatase activity	3.04E-02
89	GO:0016788: hydrolase activity, acting on ester bonds	3.38E-02
90	GO:0030145: manganese ion binding	3.62E-02
91	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.62E-02
92	GO:0046872: metal ion binding	4.40E-02
93	GO:0004364: glutathione transferase activity	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.96E-28
3	GO:0009570: chloroplast stroma	2.58E-09
4	GO:0009535: chloroplast thylakoid membrane	3.12E-07
5	GO:0042651: thylakoid membrane	5.99E-05
6	GO:0009344: nitrite reductase complex [NAD(P)H]	2.11E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.70E-04
8	GO:0080085: signal recognition particle, chloroplast targeting	4.71E-04
9	GO:0008290: F-actin capping protein complex	4.71E-04
10	GO:0009654: photosystem II oxygen evolving complex	9.63E-04
11	GO:0015630: microtubule cytoskeleton	1.09E-03
12	GO:0055035: plastid thylakoid membrane	1.85E-03
13	GO:0019898: extrinsic component of membrane	1.97E-03
14	GO:0009523: photosystem II	1.97E-03
15	GO:0009543: chloroplast thylakoid lumen	2.57E-03
16	GO:0009501: amyloplast	3.74E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.29E-03
18	GO:0005680: anaphase-promoting complex	4.85E-03
19	GO:0042644: chloroplast nucleoid	4.85E-03
20	GO:0005720: nuclear heterochromatin	4.85E-03
21	GO:0016604: nuclear body	5.44E-03
22	GO:0009941: chloroplast envelope	5.60E-03
23	GO:0032040: small-subunit processome	7.36E-03
24	GO:0030095: chloroplast photosystem II	8.75E-03
25	GO:0031969: chloroplast membrane	8.86E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	9.48E-03
27	GO:0009706: chloroplast inner membrane	1.24E-02
28	GO:0043231: intracellular membrane-bounded organelle	1.65E-02
29	GO:0009522: photosystem I	1.88E-02
30	GO:0009705: plant-type vacuole membrane	2.14E-02
31	GO:0010319: stromule	2.49E-02
32	GO:0030529: intracellular ribonucleoprotein complex	2.70E-02
33	GO:0009536: plastid	3.05E-02
34	GO:0009579: thylakoid	3.73E-02
35	GO:0009534: chloroplast thylakoid	3.78E-02
36	GO:0031977: thylakoid lumen	4.37E-02