co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0006903: vesicle targeting	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
5	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
6	GO:0010398: xylogalacturonan metabolic process	0.00E+00
7	GO:0016102: diterpenoid biosynthetic process	0.00E+00
8	GO:0006102: isocitrate metabolic process	1.06E-04
9	GO:0030163: protein catabolic process	1.21E-04
10	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.50E-04
11	GO:0046939: nucleotide phosphorylation	3.42E-04
12	GO:0051645: Golgi localization	3.42E-04
13	GO:0080026: response to indolebutyric acid	3.42E-04
14	GO:0060151: peroxisome localization	3.42E-04
15	GO:0043132: NAD transport	3.42E-04
16	GO:0006807: nitrogen compound metabolic process	3.54E-04
17	GO:0006099: tricarboxylic acid cycle	3.58E-04
18	GO:0006517: protein deglycosylation	5.61E-04
19	GO:0010272: response to silver ion	5.61E-04
20	GO:0051646: mitochondrion localization	5.61E-04
21	GO:0009062: fatty acid catabolic process	5.61E-04
22	GO:0090436: leaf pavement cell development	5.61E-04
23	GO:0044375: regulation of peroxisome size	5.61E-04
24	GO:0009846: pollen germination	6.26E-04
25	GO:0000187: activation of MAPK activity	8.03E-04
26	GO:0015858: nucleoside transport	8.03E-04
27	GO:0006612: protein targeting to membrane	8.03E-04
28	GO:0006893: Golgi to plasma membrane transport	8.03E-04
29	GO:0080024: indolebutyric acid metabolic process	8.03E-04
30	GO:0006515: misfolded or incompletely synthesized protein catabolic process	8.03E-04
31	GO:0006085: acetyl-CoA biosynthetic process	1.06E-03
32	GO:0000304: response to singlet oxygen	1.35E-03
33	GO:0098719: sodium ion import across plasma membrane	1.35E-03
34	GO:0006564: L-serine biosynthetic process	1.35E-03
35	GO:0005513: detection of calcium ion	1.35E-03
36	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.35E-03
37	GO:0009058: biosynthetic process	1.49E-03
38	GO:0042744: hydrogen peroxide catabolic process	1.65E-03
39	GO:0006555: methionine metabolic process	1.65E-03
40	GO:0060918: auxin transport	1.65E-03
41	GO:0045040: protein import into mitochondrial outer membrane	1.65E-03
42	GO:0009972: cytidine deamination	1.65E-03
43	GO:0009615: response to virus	1.88E-03
44	GO:0019509: L-methionine salvage from methylthioadenosine	1.98E-03
45	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.98E-03
46	GO:0009612: response to mechanical stimulus	1.98E-03
47	GO:0009082: branched-chain amino acid biosynthetic process	1.98E-03
48	GO:0009099: valine biosynthetic process	1.98E-03
49	GO:0080113: regulation of seed growth	1.98E-03
50	GO:0009627: systemic acquired resistance	2.10E-03
51	GO:0006888: ER to Golgi vesicle-mediated transport	2.21E-03
52	GO:0080027: response to herbivore	2.33E-03
53	GO:0071669: plant-type cell wall organization or biogenesis	2.33E-03
54	GO:0048767: root hair elongation	2.57E-03
55	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.70E-03
56	GO:0006491: N-glycan processing	2.70E-03
57	GO:0042742: defense response to bacterium	2.84E-03
58	GO:0060321: acceptance of pollen	3.08E-03
59	GO:0010120: camalexin biosynthetic process	3.08E-03
60	GO:0009097: isoleucine biosynthetic process	3.08E-03
61	GO:0046685: response to arsenic-containing substance	3.49E-03
62	GO:0009821: alkaloid biosynthetic process	3.49E-03
63	GO:0006754: ATP biosynthetic process	3.49E-03
64	GO:0051453: regulation of intracellular pH	3.91E-03
65	GO:0010205: photoinhibition	3.91E-03
66	GO:0009098: leucine biosynthetic process	3.91E-03
67	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.91E-03
68	GO:0015031: protein transport	4.33E-03
69	GO:0006032: chitin catabolic process	4.35E-03
70	GO:0009688: abscisic acid biosynthetic process	4.35E-03
71	GO:0043069: negative regulation of programmed cell death	4.35E-03
72	GO:0009682: induced systemic resistance	4.80E-03
73	GO:0072593: reactive oxygen species metabolic process	4.80E-03
74	GO:0000272: polysaccharide catabolic process	4.80E-03
75	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.27E-03
76	GO:0006790: sulfur compound metabolic process	5.27E-03
77	GO:0010102: lateral root morphogenesis	5.75E-03
78	GO:0030048: actin filament-based movement	5.75E-03
79	GO:0006626: protein targeting to mitochondrion	5.75E-03
80	GO:0006511: ubiquitin-dependent protein catabolic process	5.95E-03
81	GO:0046686: response to cadmium ion	6.17E-03
82	GO:0048467: gynoecium development	6.25E-03
83	GO:0006096: glycolytic process	6.32E-03
84	GO:0046854: phosphatidylinositol phosphorylation	6.77E-03
85	GO:0007031: peroxisome organization	6.77E-03
86	GO:0034976: response to endoplasmic reticulum stress	7.30E-03
87	GO:0009751: response to salicylic acid	7.72E-03
88	GO:0006338: chromatin remodeling	7.84E-03
89	GO:0003333: amino acid transmembrane transport	8.97E-03
90	GO:0016998: cell wall macromolecule catabolic process	8.97E-03
91	GO:0015992: proton transport	8.97E-03
92	GO:0009814: defense response, incompatible interaction	9.56E-03
93	GO:0007005: mitochondrion organization	9.56E-03
94	GO:0010227: floral organ abscission	1.02E-02
95	GO:0010089: xylem development	1.08E-02
96	GO:0009561: megagametogenesis	1.08E-02
97	GO:0042147: retrograde transport, endosome to Golgi	1.14E-02
98	GO:0015991: ATP hydrolysis coupled proton transport	1.20E-02
99	GO:0010051: xylem and phloem pattern formation	1.20E-02
100	GO:0045489: pectin biosynthetic process	1.27E-02
101	GO:0010150: leaf senescence	1.32E-02
102	GO:0006814: sodium ion transport	1.34E-02
103	GO:0055114: oxidation-reduction process	1.39E-02
104	GO:0009851: auxin biosynthetic process	1.41E-02
105	GO:0006635: fatty acid beta-oxidation	1.47E-02
106	GO:0009617: response to bacterium	1.58E-02
107	GO:0010090: trichome morphogenesis	1.62E-02
108	GO:0009555: pollen development	1.63E-02
109	GO:0009611: response to wounding	1.68E-02
110	GO:0019760: glucosinolate metabolic process	1.69E-02
111	GO:0010252: auxin homeostasis	1.69E-02
112	GO:0006464: cellular protein modification process	1.69E-02
113	GO:0006914: autophagy	1.69E-02
114	GO:0071805: potassium ion transmembrane transport	1.76E-02
115	GO:0006904: vesicle docking involved in exocytosis	1.76E-02
116	GO:0050832: defense response to fungus	1.88E-02
117	GO:0009860: pollen tube growth	2.20E-02
118	GO:0009651: response to salt stress	2.31E-02
119	GO:0006499: N-terminal protein myristoylation	2.48E-02
120	GO:0009407: toxin catabolic process	2.48E-02
121	GO:0009631: cold acclimation	2.56E-02
122	GO:0045087: innate immune response	2.74E-02
123	GO:0006839: mitochondrial transport	3.00E-02
124	GO:0006887: exocytosis	3.09E-02
125	GO:0006886: intracellular protein transport	3.13E-02
126	GO:0051707: response to other organism	3.28E-02
127	GO:0009644: response to high light intensity	3.47E-02
128	GO:0009636: response to toxic substance	3.56E-02
129	GO:0031347: regulation of defense response	3.76E-02
130	GO:0000165: MAPK cascade	3.76E-02
131	GO:0009664: plant-type cell wall organization	3.85E-02
132	GO:0006979: response to oxidative stress	3.97E-02
133	GO:0009753: response to jasmonic acid	4.01E-02
134	GO:0009809: lignin biosynthetic process	4.05E-02
135	GO:0051603: proteolysis involved in cellular protein catabolic process	4.15E-02
136	GO:0009626: plant-type hypersensitive response	4.78E-02
137	GO:0009620: response to fungus	4.88E-02
138	GO:0016569: covalent chromatin modification	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
5	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
6	GO:0047844: deoxycytidine deaminase activity	0.00E+00
7	GO:0044610: FMN transmembrane transporter activity	0.00E+00
8	GO:0000287: magnesium ion binding	7.18E-06
9	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.63E-06
10	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	4.37E-05
11	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	4.37E-05
12	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.50E-04
13	GO:0019786: Atg8-specific protease activity	1.50E-04
14	GO:0048037: cofactor binding	1.50E-04
15	GO:0015230: FAD transmembrane transporter activity	1.50E-04
16	GO:0004743: pyruvate kinase activity	1.96E-04
17	GO:0030955: potassium ion binding	1.96E-04
18	GO:0010297: heteropolysaccharide binding	3.42E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	3.42E-04
20	GO:0051724: NAD transporter activity	3.42E-04
21	GO:0008805: carbon-monoxide oxygenase activity	3.42E-04
22	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.42E-04
23	GO:0070361: mitochondrial light strand promoter anti-sense binding	3.42E-04
24	GO:0019779: Atg8 activating enzyme activity	3.42E-04
25	GO:0030742: GTP-dependent protein binding	3.42E-04
26	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.42E-04
27	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.42E-04
28	GO:0015228: coenzyme A transmembrane transporter activity	3.42E-04
29	GO:0004190: aspartic-type endopeptidase activity	4.48E-04
30	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	5.61E-04
31	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.61E-04
32	GO:0051287: NAD binding	5.98E-04
33	GO:0004298: threonine-type endopeptidase activity	6.67E-04
34	GO:0052655: L-valine transaminase activity	8.03E-04
35	GO:0003878: ATP citrate synthase activity	8.03E-04
36	GO:0019201: nucleotide kinase activity	8.03E-04
37	GO:0052656: L-isoleucine transaminase activity	8.03E-04
38	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.03E-04
39	GO:0052654: L-leucine transaminase activity	8.03E-04
40	GO:0004084: branched-chain-amino-acid transaminase activity	1.06E-03
41	GO:0070628: proteasome binding	1.06E-03
42	GO:0004031: aldehyde oxidase activity	1.06E-03
43	GO:0050302: indole-3-acetaldehyde oxidase activity	1.06E-03
44	GO:0019776: Atg8 ligase activity	1.06E-03
45	GO:0010279: indole-3-acetic acid amido synthetase activity	1.06E-03
46	GO:0005524: ATP binding	1.09E-03
47	GO:0080122: AMP transmembrane transporter activity	1.35E-03
48	GO:0017137: Rab GTPase binding	1.35E-03
49	GO:0004040: amidase activity	1.35E-03
50	GO:0035252: UDP-xylosyltransferase activity	1.65E-03
51	GO:0008565: protein transporter activity	1.75E-03
52	GO:0015217: ADP transmembrane transporter activity	1.98E-03
53	GO:0004126: cytidine deaminase activity	1.98E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.98E-03
55	GO:0004017: adenylate kinase activity	1.98E-03
56	GO:0005347: ATP transmembrane transporter activity	1.98E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	1.98E-03
58	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.70E-03
59	GO:0004708: MAP kinase kinase activity	2.70E-03
60	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.49E-03
61	GO:0004601: peroxidase activity	3.65E-03
62	GO:0016844: strictosidine synthase activity	3.91E-03
63	GO:0015174: basic amino acid transmembrane transporter activity	3.91E-03
64	GO:0004568: chitinase activity	4.35E-03
65	GO:0005198: structural molecule activity	4.47E-03
66	GO:0015386: potassium:proton antiporter activity	4.80E-03
67	GO:0016301: kinase activity	6.16E-03
68	GO:0003774: motor activity	6.25E-03
69	GO:0008061: chitin binding	6.77E-03
70	GO:0031418: L-ascorbic acid binding	7.84E-03
71	GO:0010333: terpene synthase activity	8.97E-03
72	GO:0004176: ATP-dependent peptidase activity	8.97E-03
73	GO:0030170: pyridoxal phosphate binding	1.06E-02
74	GO:0003756: protein disulfide isomerase activity	1.08E-02
75	GO:0004402: histone acetyltransferase activity	1.20E-02
76	GO:0005199: structural constituent of cell wall	1.27E-02
77	GO:0001085: RNA polymerase II transcription factor binding	1.27E-02
78	GO:0016887: ATPase activity	1.37E-02
79	GO:0015385: sodium:proton antiporter activity	1.62E-02
80	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.76E-02
81	GO:0008237: metallopeptidase activity	1.76E-02
82	GO:0016597: amino acid binding	1.84E-02
83	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.15E-02
84	GO:0020037: heme binding	2.16E-02
85	GO:0008236: serine-type peptidase activity	2.23E-02
86	GO:0043531: ADP binding	2.24E-02
87	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.31E-02
88	GO:0050660: flavin adenine dinucleotide binding	2.37E-02
89	GO:0008233: peptidase activity	2.50E-02
90	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.56E-02
91	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.56E-02
92	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.74E-02
93	GO:0003746: translation elongation factor activity	2.74E-02
94	GO:0004364: glutathione transferase activity	3.19E-02
95	GO:0004722: protein serine/threonine phosphatase activity	3.33E-02
96	GO:0051537: 2 iron, 2 sulfur cluster binding	3.47E-02
97	GO:0005506: iron ion binding	3.86E-02
98	GO:0009055: electron carrier activity	4.01E-02
99	GO:0016298: lipase activity	4.15E-02
100	GO:0015171: amino acid transmembrane transporter activity	4.36E-02
101	GO:0031625: ubiquitin protein ligase binding	4.36E-02
102	GO:0003824: catalytic activity	4.41E-02
103	GO:0046872: metal ion binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0005839: proteasome core complex	3.30E-05
2	GO:0000502: proteasome complex	6.68E-05
3	GO:0005829: cytosol	5.46E-04
4	GO:0046861: glyoxysomal membrane	5.61E-04
5	GO:0009530: primary cell wall	5.61E-04
6	GO:0005775: vacuolar lumen	8.03E-04
7	GO:0009346: citrate lyase complex	8.03E-04
8	GO:0005774: vacuolar membrane	8.44E-04
9	GO:0005777: peroxisome	1.05E-03
10	GO:0030660: Golgi-associated vesicle membrane	1.06E-03
11	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.06E-03
12	GO:0005776: autophagosome	1.06E-03
13	GO:0005794: Golgi apparatus	1.23E-03
14	GO:0030127: COPII vesicle coat	1.65E-03
15	GO:0030904: retromer complex	1.65E-03
16	GO:0005778: peroxisomal membrane	1.68E-03
17	GO:0000421: autophagosome membrane	2.70E-03
18	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.70E-03
19	GO:0031982: vesicle	2.70E-03
20	GO:0009514: glyoxysome	3.08E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	3.08E-03
22	GO:0005779: integral component of peroxisomal membrane	3.08E-03
23	GO:0005742: mitochondrial outer membrane translocase complex	3.08E-03
24	GO:0016459: myosin complex	4.35E-03
25	GO:0005765: lysosomal membrane	4.80E-03
26	GO:0008541: proteasome regulatory particle, lid subcomplex	4.80E-03
27	GO:0005768: endosome	9.28E-03
28	GO:0031410: cytoplasmic vesicle	9.56E-03
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.08E-02
30	GO:0005783: endoplasmic reticulum	1.21E-02
31	GO:0016592: mediator complex	1.55E-02
32	GO:0000145: exocyst	1.55E-02
33	GO:0032580: Golgi cisterna membrane	1.69E-02
34	GO:0030529: intracellular ribonucleoprotein complex	1.92E-02
35	GO:0005788: endoplasmic reticulum lumen	1.99E-02
36	GO:0005667: transcription factor complex	2.07E-02
37	GO:0005643: nuclear pore	2.31E-02
38	GO:0005886: plasma membrane	2.60E-02
39	GO:0005737: cytoplasm	2.75E-02
40	GO:0005802: trans-Golgi network	2.94E-02
41	GO:0005618: cell wall	3.05E-02
42	GO:0031902: late endosome membrane	3.09E-02
43	GO:0005856: cytoskeleton	3.56E-02
44	GO:0010008: endosome membrane	4.67E-02
45	GO:0005773: vacuole	4.92E-02