Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G35250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0046471: phosphatidylglycerol metabolic process0.00E+00
6GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
7GO:0015717: triose phosphate transport0.00E+00
8GO:1901918: negative regulation of exoribonuclease activity0.00E+00
9GO:0009773: photosynthetic electron transport in photosystem I5.66E-11
10GO:0015979: photosynthesis1.38E-08
11GO:0015995: chlorophyll biosynthetic process1.08E-07
12GO:0055114: oxidation-reduction process1.78E-06
13GO:0006636: unsaturated fatty acid biosynthetic process2.36E-06
14GO:0032544: plastid translation9.16E-06
15GO:0090391: granum assembly1.24E-05
16GO:0010114: response to red light1.46E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.80E-05
18GO:0071484: cellular response to light intensity2.80E-05
19GO:0006094: gluconeogenesis4.47E-05
20GO:0015994: chlorophyll metabolic process5.05E-05
21GO:0010143: cutin biosynthetic process5.44E-05
22GO:0010207: photosystem II assembly5.44E-05
23GO:0006810: transport6.36E-05
24GO:0009768: photosynthesis, light harvesting in photosystem I1.06E-04
25GO:0042549: photosystem II stabilization1.17E-04
26GO:0006631: fatty acid metabolic process1.58E-04
27GO:1901259: chloroplast rRNA processing1.60E-04
28GO:0006633: fatty acid biosynthetic process1.74E-04
29GO:0009772: photosynthetic electron transport in photosystem II2.10E-04
30GO:0009642: response to light intensity2.66E-04
31GO:0005980: glycogen catabolic process2.75E-04
32GO:0046467: membrane lipid biosynthetic process2.75E-04
33GO:0015671: oxygen transport2.75E-04
34GO:0071277: cellular response to calcium ion2.75E-04
35GO:0080093: regulation of photorespiration2.75E-04
36GO:0031998: regulation of fatty acid beta-oxidation2.75E-04
37GO:0010028: xanthophyll cycle2.75E-04
38GO:0034337: RNA folding2.75E-04
39GO:0000023: maltose metabolic process2.75E-04
40GO:0000025: maltose catabolic process2.75E-04
41GO:0006098: pentose-phosphate shunt3.94E-04
42GO:0010206: photosystem II repair3.94E-04
43GO:0010027: thylakoid membrane organization5.32E-04
44GO:0005976: polysaccharide metabolic process6.04E-04
45GO:0006898: receptor-mediated endocytosis6.04E-04
46GO:0071457: cellular response to ozone6.04E-04
47GO:0016122: xanthophyll metabolic process6.04E-04
48GO:0030388: fructose 1,6-bisphosphate metabolic process6.04E-04
49GO:0043085: positive regulation of catalytic activity6.30E-04
50GO:0009735: response to cytokinin8.37E-04
51GO:0019253: reductive pentose-phosphate cycle9.17E-04
52GO:0006000: fructose metabolic process9.79E-04
53GO:0006518: peptide metabolic process9.79E-04
54GO:0035436: triose phosphate transmembrane transport9.79E-04
55GO:0034599: cellular response to oxidative stress1.06E-03
56GO:0009052: pentose-phosphate shunt, non-oxidative branch1.40E-03
57GO:1902358: sulfate transmembrane transport1.40E-03
58GO:0006020: inositol metabolic process1.40E-03
59GO:0009152: purine ribonucleotide biosynthetic process1.40E-03
60GO:0046653: tetrahydrofolate metabolic process1.40E-03
61GO:0061077: chaperone-mediated protein folding1.52E-03
62GO:0015713: phosphoglycerate transport1.87E-03
63GO:0006021: inositol biosynthetic process1.87E-03
64GO:0071483: cellular response to blue light1.87E-03
65GO:0071486: cellular response to high light intensity1.87E-03
66GO:0009765: photosynthesis, light harvesting1.87E-03
67GO:0006109: regulation of carbohydrate metabolic process1.87E-03
68GO:0045727: positive regulation of translation1.87E-03
69GO:0071493: cellular response to UV-B2.39E-03
70GO:0006656: phosphatidylcholine biosynthetic process2.39E-03
71GO:0006564: L-serine biosynthetic process2.39E-03
72GO:0009904: chloroplast accumulation movement2.39E-03
73GO:0006097: glyoxylate cycle2.39E-03
74GO:0006662: glycerol ether metabolic process2.48E-03
75GO:0006096: glycolytic process2.48E-03
76GO:1902456: regulation of stomatal opening2.95E-03
77GO:0010190: cytochrome b6f complex assembly2.95E-03
78GO:0009228: thiamine biosynthetic process2.95E-03
79GO:0046855: inositol phosphate dephosphorylation2.95E-03
80GO:0009643: photosynthetic acclimation2.95E-03
81GO:0010304: PSII associated light-harvesting complex II catabolic process2.95E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.95E-03
83GO:0009903: chloroplast avoidance movement3.55E-03
84GO:0010189: vitamin E biosynthetic process3.55E-03
85GO:0009854: oxidative photosynthetic carbon pathway3.55E-03
86GO:0009955: adaxial/abaxial pattern specification3.55E-03
87GO:0010196: nonphotochemical quenching4.19E-03
88GO:0008272: sulfate transport4.19E-03
89GO:0009769: photosynthesis, light harvesting in photosystem II4.19E-03
90GO:0009645: response to low light intensity stimulus4.19E-03
91GO:0019827: stem cell population maintenance4.86E-03
92GO:0008610: lipid biosynthetic process4.86E-03
93GO:0030091: protein repair4.86E-03
94GO:0009704: de-etiolation4.86E-03
95GO:0032259: methylation5.47E-03
96GO:0019430: removal of superoxide radicals5.57E-03
97GO:0009657: plastid organization5.57E-03
98GO:2000031: regulation of salicylic acid mediated signaling pathway5.57E-03
99GO:0006002: fructose 6-phosphate metabolic process5.57E-03
100GO:0015996: chlorophyll catabolic process5.57E-03
101GO:0018298: protein-chromophore linkage5.76E-03
102GO:0009821: alkaloid biosynthetic process6.31E-03
103GO:0019432: triglyceride biosynthetic process6.31E-03
104GO:0090333: regulation of stomatal closure6.31E-03
105GO:0006783: heme biosynthetic process6.31E-03
106GO:0006754: ATP biosynthetic process6.31E-03
107GO:0010218: response to far red light6.35E-03
108GO:0005982: starch metabolic process7.09E-03
109GO:0010205: photoinhibition7.09E-03
110GO:0006779: porphyrin-containing compound biosynthetic process7.09E-03
111GO:0009409: response to cold7.27E-03
112GO:0009637: response to blue light7.30E-03
113GO:0009853: photorespiration7.30E-03
114GO:0006782: protoporphyrinogen IX biosynthetic process7.90E-03
115GO:0009641: shade avoidance7.90E-03
116GO:0006949: syncytium formation7.90E-03
117GO:0006415: translational termination8.74E-03
118GO:0000272: polysaccharide catabolic process8.74E-03
119GO:0018119: peptidyl-cysteine S-nitrosylation8.74E-03
120GO:0005983: starch catabolic process9.61E-03
121GO:0002213: defense response to insect9.61E-03
122GO:0016024: CDP-diacylglycerol biosynthetic process9.61E-03
123GO:0006790: sulfur compound metabolic process9.61E-03
124GO:0006108: malate metabolic process1.05E-02
125GO:0006006: glucose metabolic process1.05E-02
126GO:0009725: response to hormone1.05E-02
127GO:0009767: photosynthetic electron transport chain1.05E-02
128GO:0005986: sucrose biosynthetic process1.05E-02
129GO:0042254: ribosome biogenesis1.12E-02
130GO:0007015: actin filament organization1.14E-02
131GO:0010223: secondary shoot formation1.14E-02
132GO:0009266: response to temperature stimulus1.14E-02
133GO:0005985: sucrose metabolic process1.24E-02
134GO:0046854: phosphatidylinositol phosphorylation1.24E-02
135GO:0006364: rRNA processing1.27E-02
136GO:0010025: wax biosynthetic process1.34E-02
137GO:0080167: response to karrikin1.44E-02
138GO:0009695: jasmonic acid biosynthetic process1.55E-02
139GO:0009269: response to desiccation1.65E-02
140GO:0016114: terpenoid biosynthetic process1.65E-02
141GO:0016226: iron-sulfur cluster assembly1.76E-02
142GO:2000022: regulation of jasmonic acid mediated signaling pathway1.76E-02
143GO:0030433: ubiquitin-dependent ERAD pathway1.76E-02
144GO:0009306: protein secretion1.99E-02
145GO:0070417: cellular response to cold2.11E-02
146GO:0042335: cuticle development2.23E-02
147GO:0000413: protein peptidyl-prolyl isomerization2.23E-02
148GO:0042631: cellular response to water deprivation2.23E-02
149GO:0071472: cellular response to salt stress2.35E-02
150GO:0009058: biosynthetic process2.40E-02
151GO:0015986: ATP synthesis coupled proton transport2.47E-02
152GO:0019252: starch biosynthetic process2.60E-02
153GO:0005975: carbohydrate metabolic process2.64E-02
154GO:0032502: developmental process2.86E-02
155GO:0009630: gravitropism2.86E-02
156GO:0009828: plant-type cell wall loosening3.13E-02
157GO:0051607: defense response to virus3.41E-02
158GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.69E-02
159GO:0042128: nitrate assimilation3.84E-02
160GO:0042742: defense response to bacterium3.95E-02
161GO:0006979: response to oxidative stress3.99E-02
162GO:0016311: dephosphorylation4.14E-02
163GO:0009817: defense response to fungus, incompatible interaction4.29E-02
164GO:0010311: lateral root formation4.44E-02
165GO:0000160: phosphorelay signal transduction system4.44E-02
166GO:0010119: regulation of stomatal movement4.75E-02
167GO:0009631: cold acclimation4.75E-02
168GO:0009416: response to light stimulus4.79E-02
169GO:0009658: chloroplast organization4.84E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0045550: geranylgeranyl reductase activity0.00E+00
5GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
6GO:0046408: chlorophyll synthetase activity0.00E+00
7GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
8GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
9GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
10GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
11GO:0010297: heteropolysaccharide binding3.47E-06
12GO:0004565: beta-galactosidase activity4.47E-05
13GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.05E-05
14GO:0031409: pigment binding7.75E-05
15GO:0019843: rRNA binding1.08E-04
16GO:0004332: fructose-bisphosphate aldolase activity1.17E-04
17GO:0004134: 4-alpha-glucanotransferase activity2.75E-04
18GO:0004645: phosphorylase activity2.75E-04
19GO:0009374: biotin binding2.75E-04
20GO:0045485: omega-6 fatty acid desaturase activity2.75E-04
21GO:0034256: chlorophyll(ide) b reductase activity2.75E-04
22GO:0031957: very long-chain fatty acid-CoA ligase activity2.75E-04
23GO:0005344: oxygen transporter activity2.75E-04
24GO:0035671: enone reductase activity2.75E-04
25GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.75E-04
26GO:0008184: glycogen phosphorylase activity2.75E-04
27GO:0048038: quinone binding3.29E-04
28GO:0008047: enzyme activator activity5.46E-04
29GO:0016168: chlorophyll binding5.71E-04
30GO:0018708: thiol S-methyltransferase activity6.04E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity6.04E-04
32GO:0052833: inositol monophosphate 4-phosphatase activity6.04E-04
33GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.04E-04
34GO:0008967: phosphoglycolate phosphatase activity6.04E-04
35GO:0000234: phosphoethanolamine N-methyltransferase activity6.04E-04
36GO:0008883: glutamyl-tRNA reductase activity6.04E-04
37GO:0047746: chlorophyllase activity6.04E-04
38GO:0042389: omega-3 fatty acid desaturase activity6.04E-04
39GO:0004617: phosphoglycerate dehydrogenase activity6.04E-04
40GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.04E-04
41GO:0052832: inositol monophosphate 3-phosphatase activity6.04E-04
42GO:0033201: alpha-1,4-glucan synthase activity6.04E-04
43GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.04E-04
44GO:0004373: glycogen (starch) synthase activity9.79E-04
45GO:0050734: hydroxycinnamoyltransferase activity9.79E-04
46GO:0004751: ribose-5-phosphate isomerase activity9.79E-04
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity9.79E-04
48GO:0071917: triose-phosphate transmembrane transporter activity9.79E-04
49GO:0008864: formyltetrahydrofolate deformylase activity9.79E-04
50GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.79E-04
51GO:0010277: chlorophyllide a oxygenase [overall] activity9.79E-04
52GO:0005528: FK506 binding1.26E-03
53GO:0016149: translation release factor activity, codon specific1.40E-03
54GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.40E-03
55GO:0016851: magnesium chelatase activity1.40E-03
56GO:0019201: nucleotide kinase activity1.40E-03
57GO:0051537: 2 iron, 2 sulfur cluster binding1.51E-03
58GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.67E-03
59GO:0009011: starch synthase activity1.87E-03
60GO:0015120: phosphoglycerate transmembrane transporter activity1.87E-03
61GO:0047134: protein-disulfide reductase activity2.13E-03
62GO:0016491: oxidoreductase activity2.19E-03
63GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.39E-03
64GO:0003989: acetyl-CoA carboxylase activity2.39E-03
65GO:0004791: thioredoxin-disulfide reductase activity2.67E-03
66GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.95E-03
67GO:0004784: superoxide dismutase activity2.95E-03
68GO:0016615: malate dehydrogenase activity2.95E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.95E-03
70GO:2001070: starch binding2.95E-03
71GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.48E-03
72GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.55E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.55E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.55E-03
75GO:0004017: adenylate kinase activity3.55E-03
76GO:0102391: decanoate--CoA ligase activity3.55E-03
77GO:0030060: L-malate dehydrogenase activity3.55E-03
78GO:0004467: long-chain fatty acid-CoA ligase activity4.19E-03
79GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.57E-03
80GO:0008271: secondary active sulfate transmembrane transporter activity5.57E-03
81GO:0003747: translation release factor activity6.31E-03
82GO:0016844: strictosidine synthase activity7.09E-03
83GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.09E-03
84GO:0030234: enzyme regulator activity7.90E-03
85GO:0050661: NADP binding8.33E-03
86GO:0047372: acylglycerol lipase activity8.74E-03
87GO:0015116: sulfate transmembrane transporter activity9.61E-03
88GO:0008168: methyltransferase activity1.04E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.05E-02
90GO:0031072: heat shock protein binding1.05E-02
91GO:0051287: NAD binding1.14E-02
92GO:0051536: iron-sulfur cluster binding1.44E-02
93GO:0004857: enzyme inhibitor activity1.44E-02
94GO:0015035: protein disulfide oxidoreductase activity1.87E-02
95GO:0003727: single-stranded RNA binding1.99E-02
96GO:0030246: carbohydrate binding2.17E-02
97GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.35E-02
98GO:0050662: coenzyme binding2.47E-02
99GO:0016853: isomerase activity2.47E-02
100GO:0004872: receptor activity2.60E-02
101GO:0000156: phosphorelay response regulator activity2.99E-02
102GO:0016791: phosphatase activity3.13E-02
103GO:0016597: amino acid binding3.41E-02
104GO:0005509: calcium ion binding3.52E-02
105GO:0003735: structural constituent of ribosome4.12E-02
106GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.29E-02
107GO:0004222: metalloendopeptidase activity4.59E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009507: chloroplast6.03E-55
3GO:0009535: chloroplast thylakoid membrane8.01E-43
4GO:0009534: chloroplast thylakoid4.23E-40
5GO:0009941: chloroplast envelope3.54E-25
6GO:0009579: thylakoid9.63E-21
7GO:0009543: chloroplast thylakoid lumen1.67E-15
8GO:0009570: chloroplast stroma8.20E-15
9GO:0031977: thylakoid lumen3.61E-13
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.73E-12
11GO:0010287: plastoglobule5.35E-07
12GO:0031969: chloroplast membrane1.53E-06
13GO:0009654: photosystem II oxygen evolving complex3.76E-06
14GO:0019898: extrinsic component of membrane1.87E-05
15GO:0030095: chloroplast photosystem II5.44E-05
16GO:0030076: light-harvesting complex6.53E-05
17GO:0009515: granal stacked thylakoid2.75E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]2.75E-04
19GO:0048046: apoplast3.73E-04
20GO:0010319: stromule4.58E-04
21GO:0009706: chloroplast inner membrane5.24E-04
22GO:0031357: integral component of chloroplast inner membrane6.04E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex6.04E-04
24GO:0010007: magnesium chelatase complex9.79E-04
25GO:0009317: acetyl-CoA carboxylase complex9.79E-04
26GO:0042651: thylakoid membrane1.38E-03
27GO:0009517: PSII associated light-harvesting complex II1.87E-03
28GO:0009544: chloroplast ATP synthase complex1.87E-03
29GO:0009522: photosystem I2.67E-03
30GO:0009523: photosystem II2.86E-03
31GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.95E-03
32GO:0005840: ribosome4.41E-03
33GO:0031982: vesicle4.86E-03
34GO:0009501: amyloplast4.86E-03
35GO:0005763: mitochondrial small ribosomal subunit6.31E-03
36GO:0032040: small-subunit processome9.61E-03
37GO:0043234: protein complex1.34E-02
38GO:0015935: small ribosomal subunit1.65E-02
39GO:0005773: vacuole1.81E-02
40GO:0016021: integral component of membrane2.23E-02
41GO:0005623: cell2.34E-02
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Gene type



Gene DE type