co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0009926: auxin polar transport	1.37E-04
6	GO:0043087: regulation of GTPase activity	2.46E-04
7	GO:0043609: regulation of carbon utilization	2.46E-04
8	GO:0051013: microtubule severing	2.46E-04
9	GO:0034757: negative regulation of iron ion transport	2.46E-04
10	GO:0032958: inositol phosphate biosynthetic process	2.46E-04
11	GO:0061062: regulation of nematode larval development	5.44E-04
12	GO:0010271: regulation of chlorophyll catabolic process	5.44E-04
13	GO:0001736: establishment of planar polarity	5.44E-04
14	GO:0009825: multidimensional cell growth	8.79E-04
15	GO:0006065: UDP-glucuronate biosynthetic process	8.83E-04
16	GO:0006000: fructose metabolic process	8.83E-04
17	GO:0010226: response to lithium ion	8.83E-04
18	GO:0080117: secondary growth	8.83E-04
19	GO:0080055: low-affinity nitrate transport	8.83E-04
20	GO:0006020: inositol metabolic process	1.26E-03
21	GO:0051639: actin filament network formation	1.26E-03
22	GO:0034059: response to anoxia	1.26E-03
23	GO:2001141: regulation of RNA biosynthetic process	1.26E-03
24	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.55E-03
25	GO:0051764: actin crosslink formation	1.68E-03
26	GO:0006284: base-excision repair	1.68E-03
27	GO:0006021: inositol biosynthetic process	1.68E-03
28	GO:0009956: radial pattern formation	1.68E-03
29	GO:0009734: auxin-activated signaling pathway	1.90E-03
30	GO:0009624: response to nematode	2.56E-03
31	GO:0016554: cytidine to uridine editing	2.65E-03
32	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.65E-03
33	GO:0048831: regulation of shoot system development	2.65E-03
34	GO:0003006: developmental process involved in reproduction	2.65E-03
35	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.66E-03
36	GO:0010583: response to cyclopentenone	2.78E-03
37	GO:0009828: plant-type cell wall loosening	3.16E-03
38	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.18E-03
39	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.18E-03
40	GO:0009942: longitudinal axis specification	3.18E-03
41	GO:0048509: regulation of meristem development	3.18E-03
42	GO:0009733: response to auxin	3.66E-03
43	GO:0009610: response to symbiotic fungus	3.75E-03
44	GO:0019745: pentacyclic triterpenoid biosynthetic process	3.75E-03
45	GO:0000082: G1/S transition of mitotic cell cycle	3.75E-03
46	GO:0010444: guard mother cell differentiation	3.75E-03
47	GO:0000105: histidine biosynthetic process	4.35E-03
48	GO:0046620: regulation of organ growth	4.35E-03
49	GO:0009932: cell tip growth	4.98E-03
50	GO:0006002: fructose 6-phosphate metabolic process	4.98E-03
51	GO:0071482: cellular response to light stimulus	4.98E-03
52	GO:0010497: plasmodesmata-mediated intercellular transport	4.98E-03
53	GO:0009657: plastid organization	4.98E-03
54	GO:0048574: long-day photoperiodism, flowering	4.98E-03
55	GO:0007389: pattern specification process	4.98E-03
56	GO:0000160: phosphorelay signal transduction system	5.15E-03
57	GO:0009056: catabolic process	5.65E-03
58	GO:0006098: pentose-phosphate shunt	5.65E-03
59	GO:0048507: meristem development	5.65E-03
60	GO:0046916: cellular transition metal ion homeostasis	5.65E-03
61	GO:0000373: Group II intron splicing	5.65E-03
62	GO:0048589: developmental growth	5.65E-03
63	GO:1900865: chloroplast RNA modification	6.33E-03
64	GO:0042761: very long-chain fatty acid biosynthetic process	6.33E-03
65	GO:0048829: root cap development	7.06E-03
66	GO:0009641: shade avoidance	7.06E-03
67	GO:0016441: posttranscriptional gene silencing	7.06E-03
68	GO:0006949: syncytium formation	7.06E-03
69	GO:0006782: protoporphyrinogen IX biosynthetic process	7.06E-03
70	GO:0019538: protein metabolic process	7.06E-03
71	GO:0006535: cysteine biosynthetic process from serine	7.06E-03
72	GO:0030001: metal ion transport	7.08E-03
73	GO:0048765: root hair cell differentiation	7.80E-03
74	GO:0008285: negative regulation of cell proliferation	7.80E-03
75	GO:0006352: DNA-templated transcription, initiation	7.80E-03
76	GO:0006790: sulfur compound metabolic process	8.58E-03
77	GO:0045037: protein import into chloroplast stroma	8.58E-03
78	GO:0010582: floral meristem determinacy	8.58E-03
79	GO:0010152: pollen maturation	8.58E-03
80	GO:0006094: gluconeogenesis	9.38E-03
81	GO:0009664: plant-type cell wall organization	1.01E-02
82	GO:0010540: basipetal auxin transport	1.02E-02
83	GO:0048467: gynoecium development	1.02E-02
84	GO:0010020: chloroplast fission	1.02E-02
85	GO:0009933: meristem structural organization	1.02E-02
86	GO:0010207: photosystem II assembly	1.02E-02
87	GO:0009736: cytokinin-activated signaling pathway	1.08E-02
88	GO:0046854: phosphatidylinositol phosphorylation	1.11E-02
89	GO:0010053: root epidermal cell differentiation	1.11E-02
90	GO:0010025: wax biosynthetic process	1.20E-02
91	GO:0007165: signal transduction	1.22E-02
92	GO:0019344: cysteine biosynthetic process	1.29E-02
93	GO:0007010: cytoskeleton organization	1.29E-02
94	GO:0051017: actin filament bundle assembly	1.29E-02
95	GO:0043622: cortical microtubule organization	1.38E-02
96	GO:0003333: amino acid transmembrane transport	1.47E-02
97	GO:0009793: embryo development ending in seed dormancy	1.50E-02
98	GO:0051726: regulation of cell cycle	1.64E-02
99	GO:0071215: cellular response to abscisic acid stimulus	1.67E-02
100	GO:0010082: regulation of root meristem growth	1.67E-02
101	GO:0048443: stamen development	1.77E-02
102	GO:0010091: trichome branching	1.77E-02
103	GO:0042127: regulation of cell proliferation	1.77E-02
104	GO:0070417: cellular response to cold	1.88E-02
105	GO:0006281: DNA repair	1.92E-02
106	GO:0010087: phloem or xylem histogenesis	1.99E-02
107	GO:0000226: microtubule cytoskeleton organization	1.99E-02
108	GO:0000271: polysaccharide biosynthetic process	1.99E-02
109	GO:0010501: RNA secondary structure unwinding	1.99E-02
110	GO:0009741: response to brassinosteroid	2.09E-02
111	GO:0045489: pectin biosynthetic process	2.09E-02
112	GO:0010305: leaf vascular tissue pattern formation	2.09E-02
113	GO:0009958: positive gravitropism	2.09E-02
114	GO:0007018: microtubule-based movement	2.21E-02
115	GO:0042744: hydrogen peroxide catabolic process	2.21E-02
116	GO:0071554: cell wall organization or biogenesis	2.43E-02
117	GO:0032502: developmental process	2.55E-02
118	GO:0040008: regulation of growth	2.55E-02
119	GO:0031047: gene silencing by RNA	2.55E-02
120	GO:0045490: pectin catabolic process	2.67E-02
121	GO:0010090: trichome morphogenesis	2.67E-02
122	GO:0010252: auxin homeostasis	2.79E-02
123	GO:0071555: cell wall organization	3.12E-02
124	GO:0001666: response to hypoxia	3.16E-02
125	GO:0010029: regulation of seed germination	3.29E-02
126	GO:0015995: chlorophyll biosynthetic process	3.55E-02
127	GO:0010411: xyloglucan metabolic process	3.55E-02
128	GO:0009817: defense response to fungus, incompatible interaction	3.82E-02
129	GO:0018298: protein-chromophore linkage	3.82E-02
130	GO:0010311: lateral root formation	3.96E-02
131	GO:0009832: plant-type cell wall biogenesis	3.96E-02
132	GO:0009826: unidimensional cell growth	3.98E-02
133	GO:0006499: N-terminal protein myristoylation	4.10E-02
134	GO:0007568: aging	4.24E-02
135	GO:0006865: amino acid transport	4.38E-02
136	GO:0016051: carbohydrate biosynthetic process	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0102245: lupan-3beta,20-diol synthase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0010011: auxin binding	4.19E-05
7	GO:0008725: DNA-3-methyladenine glycosylase activity	6.67E-05
8	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.46E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.46E-04
10	GO:0000829: inositol heptakisphosphate kinase activity	2.46E-04
11	GO:0005227: calcium activated cation channel activity	2.46E-04
12	GO:0000828: inositol hexakisphosphate kinase activity	2.46E-04
13	GO:0008568: microtubule-severing ATPase activity	2.46E-04
14	GO:0005094: Rho GDP-dissociation inhibitor activity	5.44E-04
15	GO:0010296: prenylcysteine methylesterase activity	5.44E-04
16	GO:0052832: inositol monophosphate 3-phosphatase activity	5.44E-04
17	GO:0004109: coproporphyrinogen oxidase activity	5.44E-04
18	GO:0008805: carbon-monoxide oxygenase activity	5.44E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	5.44E-04
20	GO:0052833: inositol monophosphate 4-phosphatase activity	5.44E-04
21	GO:0009884: cytokinin receptor activity	5.44E-04
22	GO:0050017: L-3-cyanoalanine synthase activity	5.44E-04
23	GO:0005096: GTPase activator activity	6.48E-04
24	GO:0005034: osmosensor activity	8.83E-04
25	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.83E-04
26	GO:0042300: beta-amyrin synthase activity	8.83E-04
27	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.83E-04
28	GO:0003913: DNA photolyase activity	8.83E-04
29	GO:0043424: protein histidine kinase binding	1.19E-03
30	GO:0001872: (1->3)-beta-D-glucan binding	1.26E-03
31	GO:0042299: lupeol synthase activity	1.26E-03
32	GO:0030570: pectate lyase activity	1.55E-03
33	GO:0001053: plastid sigma factor activity	1.68E-03
34	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.68E-03
35	GO:0016987: sigma factor activity	1.68E-03
36	GO:0010328: auxin influx transmembrane transporter activity	1.68E-03
37	GO:0005471: ATP:ADP antiporter activity	2.15E-03
38	GO:2001070: starch binding	2.65E-03
39	GO:0004332: fructose-bisphosphate aldolase activity	2.65E-03
40	GO:0019900: kinase binding	3.18E-03
41	GO:0004124: cysteine synthase activity	3.18E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.18E-03
43	GO:0009881: photoreceptor activity	3.75E-03
44	GO:0003724: RNA helicase activity	4.98E-03
45	GO:0046914: transition metal ion binding	4.98E-03
46	GO:0008017: microtubule binding	5.43E-03
47	GO:0009672: auxin:proton symporter activity	6.33E-03
48	GO:0004673: protein histidine kinase activity	7.06E-03
49	GO:0043621: protein self-association	8.67E-03
50	GO:0000155: phosphorelay sensor kinase activity	9.38E-03
51	GO:0004565: beta-galactosidase activity	9.38E-03
52	GO:0010329: auxin efflux transmembrane transporter activity	9.38E-03
53	GO:0003725: double-stranded RNA binding	9.38E-03
54	GO:0003712: transcription cofactor activity	1.11E-02
55	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.20E-02
56	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.20E-02
57	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.20E-02
58	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.57E-02
59	GO:0015035: protein disulfide oxidoreductase activity	1.59E-02
60	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.09E-02
61	GO:0016829: lyase activity	2.10E-02
62	GO:0009055: electron carrier activity	2.10E-02
63	GO:0005515: protein binding	2.19E-02
64	GO:0016853: isomerase activity	2.21E-02
65	GO:0019901: protein kinase binding	2.32E-02
66	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.43E-02
67	GO:0051015: actin filament binding	2.67E-02
68	GO:0000156: phosphorelay response regulator activity	2.67E-02
69	GO:0016413: O-acetyltransferase activity	3.04E-02
70	GO:0042802: identical protein binding	3.40E-02
71	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.55E-02
72	GO:0030247: polysaccharide binding	3.55E-02
73	GO:0004004: ATP-dependent RNA helicase activity	3.55E-02
74	GO:0008236: serine-type peptidase activity	3.69E-02
75	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.10E-02
76	GO:0004601: peroxidase activity	4.13E-02
77	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-02
78	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0032432: actin filament bundle	1.26E-03
4	GO:0009986: cell surface	3.75E-03
5	GO:0009505: plant-type cell wall	4.55E-03
6	GO:0009707: chloroplast outer membrane	4.90E-03
7	GO:0010494: cytoplasmic stress granule	5.65E-03
8	GO:0005884: actin filament	7.80E-03
9	GO:0005578: proteinaceous extracellular matrix	9.38E-03
10	GO:0009574: preprophase band	9.38E-03
11	GO:0005874: microtubule	1.12E-02
12	GO:0009532: plastid stroma	1.47E-02
13	GO:0005871: kinesin complex	1.88E-02
14	GO:0046658: anchored component of plasma membrane	3.54E-02
15	GO:0005886: plasma membrane	3.76E-02
16	GO:0009507: chloroplast	4.00E-02
17	GO:0009536: plastid	4.20E-02