Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0018023: peptidyl-lysine trimethylation0.00E+00
6GO:1905157: positive regulation of photosynthesis0.00E+00
7GO:1901259: chloroplast rRNA processing4.29E-06
8GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.96E-05
9GO:0006021: inositol biosynthetic process7.06E-05
10GO:0009955: adaxial/abaxial pattern specification2.18E-04
11GO:0000023: maltose metabolic process3.34E-04
12GO:0080112: seed growth3.34E-04
13GO:0030198: extracellular matrix organization3.34E-04
14GO:0000476: maturation of 4.5S rRNA3.34E-04
15GO:0000967: rRNA 5'-end processing3.34E-04
16GO:1905039: carboxylic acid transmembrane transport3.34E-04
17GO:1905200: gibberellic acid transmembrane transport3.34E-04
18GO:0006824: cobalt ion transport3.34E-04
19GO:0006659: phosphatidylserine biosynthetic process3.34E-04
20GO:0043686: co-translational protein modification3.34E-04
21GO:0043007: maintenance of rDNA3.34E-04
22GO:0010028: xanthophyll cycle3.34E-04
23GO:0034337: RNA folding3.34E-04
24GO:0005991: trehalose metabolic process3.34E-04
25GO:0006353: DNA-templated transcription, termination3.55E-04
26GO:0009657: plastid organization4.36E-04
27GO:0032544: plastid translation4.36E-04
28GO:0032502: developmental process5.20E-04
29GO:1901657: glycosyl compound metabolic process5.65E-04
30GO:0034470: ncRNA processing7.29E-04
31GO:1902326: positive regulation of chlorophyll biosynthetic process7.29E-04
32GO:0009629: response to gravity7.29E-04
33GO:0006898: receptor-mediated endocytosis7.29E-04
34GO:0034755: iron ion transmembrane transport7.29E-04
35GO:0007154: cell communication7.29E-04
36GO:0018026: peptidyl-lysine monomethylation7.29E-04
37GO:0042325: regulation of phosphorylation7.29E-04
38GO:1904143: positive regulation of carotenoid biosynthetic process7.29E-04
39GO:0016122: xanthophyll metabolic process7.29E-04
40GO:0006568: tryptophan metabolic process7.29E-04
41GO:0009658: chloroplast organization8.00E-04
42GO:0009773: photosynthetic electron transport in photosystem I8.32E-04
43GO:0015995: chlorophyll biosynthetic process9.38E-04
44GO:0005983: starch catabolic process9.49E-04
45GO:0009405: pathogenesis1.18E-03
46GO:0015979: photosynthesis1.46E-03
47GO:0009152: purine ribonucleotide biosynthetic process1.70E-03
48GO:0010601: positive regulation of auxin biosynthetic process1.70E-03
49GO:0046653: tetrahydrofolate metabolic process1.70E-03
50GO:0009052: pentose-phosphate shunt, non-oxidative branch1.70E-03
51GO:0010731: protein glutathionylation1.70E-03
52GO:0006020: inositol metabolic process1.70E-03
53GO:0015994: chlorophyll metabolic process2.28E-03
54GO:0022622: root system development2.28E-03
55GO:0071483: cellular response to blue light2.28E-03
56GO:0006855: drug transmembrane transport2.41E-03
57GO:0006564: L-serine biosynthetic process2.91E-03
58GO:0009904: chloroplast accumulation movement2.91E-03
59GO:0031365: N-terminal protein amino acid modification2.91E-03
60GO:0009958: positive gravitropism3.30E-03
61GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.60E-03
62GO:1902456: regulation of stomatal opening3.60E-03
63GO:0010190: cytochrome b6f complex assembly3.60E-03
64GO:0000741: karyogamy3.60E-03
65GO:0046855: inositol phosphate dephosphorylation3.60E-03
66GO:0009643: photosynthetic acclimation3.60E-03
67GO:0010304: PSII associated light-harvesting complex II catabolic process3.60E-03
68GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.60E-03
69GO:0019252: starch biosynthetic process3.81E-03
70GO:0071333: cellular response to glucose stimulus4.33E-03
71GO:0048280: vesicle fusion with Golgi apparatus4.33E-03
72GO:0009903: chloroplast avoidance movement4.33E-03
73GO:0048437: floral organ development5.11E-03
74GO:0010196: nonphotochemical quenching5.11E-03
75GO:0055114: oxidation-reduction process5.11E-03
76GO:0032880: regulation of protein localization5.11E-03
77GO:0005975: carbohydrate metabolic process5.66E-03
78GO:0010027: thylakoid membrane organization5.89E-03
79GO:0042255: ribosome assembly5.94E-03
80GO:0046620: regulation of organ growth5.94E-03
81GO:0070413: trehalose metabolism in response to stress5.94E-03
82GO:0010078: maintenance of root meristem identity5.94E-03
83GO:0052543: callose deposition in cell wall5.94E-03
84GO:0009416: response to light stimulus6.32E-03
85GO:0015996: chlorophyll catabolic process6.81E-03
86GO:0043562: cellular response to nitrogen levels6.81E-03
87GO:0009821: alkaloid biosynthetic process7.73E-03
88GO:0006783: heme biosynthetic process7.73E-03
89GO:0009813: flavonoid biosynthetic process8.09E-03
90GO:0009638: phototropism8.68E-03
91GO:0071577: zinc II ion transmembrane transport8.68E-03
92GO:0005982: starch metabolic process8.68E-03
93GO:0048527: lateral root development8.91E-03
94GO:0006896: Golgi to vacuole transport9.69E-03
95GO:0006782: protoporphyrinogen IX biosynthetic process9.69E-03
96GO:0009641: shade avoidance9.69E-03
97GO:0000038: very long-chain fatty acid metabolic process1.07E-02
98GO:0015770: sucrose transport1.07E-02
99GO:0072593: reactive oxygen species metabolic process1.07E-02
100GO:0006415: translational termination1.07E-02
101GO:0009684: indoleacetic acid biosynthetic process1.07E-02
102GO:0010015: root morphogenesis1.07E-02
103GO:0006790: sulfur compound metabolic process1.18E-02
104GO:0016024: CDP-diacylglycerol biosynthetic process1.18E-02
105GO:0010114: response to red light1.26E-02
106GO:0010588: cotyledon vascular tissue pattern formation1.29E-02
107GO:2000012: regulation of auxin polar transport1.29E-02
108GO:0010102: lateral root morphogenesis1.29E-02
109GO:0030048: actin filament-based movement1.29E-02
110GO:0048467: gynoecium development1.41E-02
111GO:0010143: cutin biosynthetic process1.41E-02
112GO:0010207: photosystem II assembly1.41E-02
113GO:0007015: actin filament organization1.41E-02
114GO:0010223: secondary shoot formation1.41E-02
115GO:0009901: anther dehiscence1.53E-02
116GO:0019853: L-ascorbic acid biosynthetic process1.53E-02
117GO:0046854: phosphatidylinositol phosphorylation1.53E-02
118GO:0006364: rRNA processing1.71E-02
119GO:0005992: trehalose biosynthetic process1.77E-02
120GO:0006857: oligopeptide transport1.83E-02
121GO:0006418: tRNA aminoacylation for protein translation1.90E-02
122GO:0009768: photosynthesis, light harvesting in photosystem I1.90E-02
123GO:0019915: lipid storage2.03E-02
124GO:0061077: chaperone-mediated protein folding2.03E-02
125GO:0048367: shoot system development2.09E-02
126GO:0016226: iron-sulfur cluster assembly2.17E-02
127GO:0006730: one-carbon metabolic process2.17E-02
128GO:0031348: negative regulation of defense response2.17E-02
129GO:0071215: cellular response to abscisic acid stimulus2.31E-02
130GO:0009686: gibberellin biosynthetic process2.31E-02
131GO:0006012: galactose metabolic process2.31E-02
132GO:0009306: protein secretion2.45E-02
133GO:0009742: brassinosteroid mediated signaling pathway2.58E-02
134GO:0016117: carotenoid biosynthetic process2.60E-02
135GO:0042147: retrograde transport, endosome to Golgi2.60E-02
136GO:0008284: positive regulation of cell proliferation2.60E-02
137GO:0042335: cuticle development2.74E-02
138GO:0080022: primary root development2.74E-02
139GO:0010087: phloem or xylem histogenesis2.74E-02
140GO:0010268: brassinosteroid homeostasis2.89E-02
141GO:0010197: polar nucleus fusion2.89E-02
142GO:0010182: sugar mediated signaling pathway2.89E-02
143GO:0009741: response to brassinosteroid2.89E-02
144GO:0009646: response to absence of light3.05E-02
145GO:0015031: protein transport3.19E-02
146GO:0006623: protein targeting to vacuole3.20E-02
147GO:0009791: post-embryonic development3.20E-02
148GO:0048825: cotyledon development3.20E-02
149GO:0008654: phospholipid biosynthetic process3.20E-02
150GO:0009556: microsporogenesis3.20E-02
151GO:0009851: auxin biosynthetic process3.20E-02
152GO:0009058: biosynthetic process3.21E-02
153GO:0016042: lipid catabolic process3.27E-02
154GO:0006891: intra-Golgi vesicle-mediated transport3.36E-02
155GO:0016132: brassinosteroid biosynthetic process3.36E-02
156GO:0009793: embryo development ending in seed dormancy3.52E-02
157GO:0009630: gravitropism3.52E-02
158GO:0009790: embryo development3.55E-02
159GO:0006633: fatty acid biosynthetic process3.82E-02
160GO:0016125: sterol metabolic process3.85E-02
161GO:0010252: auxin homeostasis3.85E-02
162GO:0009607: response to biotic stimulus4.54E-02
163GO:0006906: vesicle fusion4.72E-02
164GO:0006888: ER to Golgi vesicle-mediated transport4.90E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0005363: maltose transmembrane transporter activity0.00E+00
3GO:0090711: FMN hydrolase activity0.00E+00
4GO:0010303: limit dextrinase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0051060: pullulanase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0005201: extracellular matrix structural constituent0.00E+00
10GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.06E-05
11GO:0019843: rRNA binding1.96E-04
12GO:0004425: indole-3-glycerol-phosphate synthase activity3.34E-04
13GO:1905201: gibberellin transmembrane transporter activity3.34E-04
14GO:0051777: ent-kaurenoate oxidase activity3.34E-04
15GO:0004856: xylulokinase activity3.34E-04
16GO:0004853: uroporphyrinogen decarboxylase activity3.34E-04
17GO:0042586: peptide deformylase activity3.34E-04
18GO:0034256: chlorophyll(ide) b reductase activity3.34E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.34E-04
20GO:0045486: naringenin 3-dioxygenase activity3.34E-04
21GO:0071949: FAD binding5.24E-04
22GO:0052832: inositol monophosphate 3-phosphatase activity7.29E-04
23GO:0033201: alpha-1,4-glucan synthase activity7.29E-04
24GO:0008934: inositol monophosphate 1-phosphatase activity7.29E-04
25GO:0052833: inositol monophosphate 4-phosphatase activity7.29E-04
26GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.29E-04
27GO:0016630: protochlorophyllide reductase activity7.29E-04
28GO:0004512: inositol-3-phosphate synthase activity7.29E-04
29GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.29E-04
30GO:0004617: phosphoglycerate dehydrogenase activity7.29E-04
31GO:0102483: scopolin beta-glucosidase activity9.38E-04
32GO:0015238: drug transmembrane transporter activity1.13E-03
33GO:0004373: glycogen (starch) synthase activity1.18E-03
34GO:0002161: aminoacyl-tRNA editing activity1.18E-03
35GO:0090729: toxin activity1.18E-03
36GO:0004751: ribose-5-phosphate isomerase activity1.18E-03
37GO:0045174: glutathione dehydrogenase (ascorbate) activity1.18E-03
38GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.18E-03
39GO:0008864: formyltetrahydrofolate deformylase activity1.18E-03
40GO:0016491: oxidoreductase activity1.37E-03
41GO:0008422: beta-glucosidase activity1.60E-03
42GO:0005528: FK506 binding1.66E-03
43GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.70E-03
44GO:0016149: translation release factor activity, codon specific1.70E-03
45GO:0016851: magnesium chelatase activity1.70E-03
46GO:0022890: inorganic cation transmembrane transporter activity1.70E-03
47GO:0045430: chalcone isomerase activity2.28E-03
48GO:0009011: starch synthase activity2.28E-03
49GO:0016279: protein-lysine N-methyltransferase activity2.28E-03
50GO:0003727: single-stranded RNA binding2.62E-03
51GO:0016846: carbon-sulfur lyase activity2.91E-03
52GO:0016773: phosphotransferase activity, alcohol group as acceptor2.91E-03
53GO:0003959: NADPH dehydrogenase activity2.91E-03
54GO:0005275: amine transmembrane transporter activity2.91E-03
55GO:0004629: phospholipase C activity3.60E-03
56GO:0035673: oligopeptide transmembrane transporter activity3.60E-03
57GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.60E-03
58GO:0004556: alpha-amylase activity3.60E-03
59GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.60E-03
60GO:0048038: quinone binding4.08E-03
61GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.33E-03
62GO:0004435: phosphatidylinositol phospholipase C activity4.33E-03
63GO:0016791: phosphatase activity4.94E-03
64GO:0004033: aldo-keto reductase (NADP) activity5.94E-03
65GO:0003747: translation release factor activity7.73E-03
66GO:0015297: antiporter activity8.58E-03
67GO:0005215: transporter activity8.67E-03
68GO:0005381: iron ion transmembrane transporter activity8.68E-03
69GO:0016844: strictosidine synthase activity8.68E-03
70GO:0015020: glucuronosyltransferase activity9.69E-03
71GO:0015386: potassium:proton antiporter activity1.07E-02
72GO:0008515: sucrose transmembrane transporter activity1.07E-02
73GO:0000149: SNARE binding1.07E-02
74GO:0008559: xenobiotic-transporting ATPase activity1.07E-02
75GO:0047372: acylglycerol lipase activity1.07E-02
76GO:0000049: tRNA binding1.18E-02
77GO:0015198: oligopeptide transporter activity1.18E-02
78GO:0005484: SNAP receptor activity1.26E-02
79GO:0003725: double-stranded RNA binding1.29E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity1.29E-02
81GO:0004089: carbonate dehydratase activity1.29E-02
82GO:0031072: heat shock protein binding1.29E-02
83GO:0019888: protein phosphatase regulator activity1.29E-02
84GO:0043621: protein self-association1.37E-02
85GO:0008083: growth factor activity1.41E-02
86GO:0008266: poly(U) RNA binding1.41E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.41E-02
88GO:0003774: motor activity1.41E-02
89GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.48E-02
90GO:0005525: GTP binding1.50E-02
91GO:0051119: sugar transmembrane transporter activity1.53E-02
92GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.65E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.65E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.65E-02
95GO:0031409: pigment binding1.65E-02
96GO:0051536: iron-sulfur cluster binding1.77E-02
97GO:0031418: L-ascorbic acid binding1.77E-02
98GO:0005385: zinc ion transmembrane transporter activity1.77E-02
99GO:0015079: potassium ion transmembrane transporter activity1.90E-02
100GO:0008324: cation transmembrane transporter activity1.90E-02
101GO:0004497: monooxygenase activity2.08E-02
102GO:0004812: aminoacyl-tRNA ligase activity2.60E-02
103GO:0003713: transcription coactivator activity2.89E-02
104GO:0015299: solute:proton antiporter activity3.05E-02
105GO:0004252: serine-type endopeptidase activity3.38E-02
106GO:0008565: protein transporter activity3.64E-02
107GO:0008237: metallopeptidase activity4.02E-02
108GO:0016597: amino acid binding4.19E-02
109GO:0016168: chlorophyll binding4.54E-02
110GO:0008375: acetylglucosaminyltransferase activity4.72E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast2.30E-22
3GO:0009535: chloroplast thylakoid membrane1.56E-14
4GO:0009570: chloroplast stroma2.75E-13
5GO:0009534: chloroplast thylakoid7.76E-09
6GO:0031969: chloroplast membrane4.50E-06
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.06E-05
8GO:0009543: chloroplast thylakoid lumen2.26E-05
9GO:0031977: thylakoid lumen2.57E-04
10GO:0009941: chloroplast envelope2.90E-04
11GO:0009547: plastid ribosome3.34E-04
12GO:0009579: thylakoid7.21E-04
13GO:0010007: magnesium chelatase complex1.18E-03
14GO:0033281: TAT protein transport complex1.18E-03
15GO:0042651: thylakoid membrane1.84E-03
16GO:0009840: chloroplastic endopeptidase Clp complex4.33E-03
17GO:0031982: vesicle5.94E-03
18GO:0012507: ER to Golgi transport vesicle membrane5.94E-03
19GO:0009501: amyloplast5.94E-03
20GO:0031901: early endosome membrane7.73E-03
21GO:0005763: mitochondrial small ribosomal subunit7.73E-03
22GO:0016459: myosin complex9.69E-03
23GO:0000159: protein phosphatase type 2A complex1.07E-02
24GO:0031201: SNARE complex1.16E-02
25GO:0031902: late endosome membrane1.16E-02
26GO:0032040: small-subunit processome1.18E-02
27GO:0000311: plastid large ribosomal subunit1.18E-02
28GO:0009508: plastid chromosome1.29E-02
29GO:0030095: chloroplast photosystem II1.41E-02
30GO:0030076: light-harvesting complex1.53E-02
31GO:0005789: endoplasmic reticulum membrane1.62E-02
32GO:0009654: photosystem II oxygen evolving complex1.90E-02
33GO:0015935: small ribosomal subunit2.03E-02
34GO:0009532: plastid stroma2.03E-02
35GO:0005840: ribosome2.31E-02
36GO:0009706: chloroplast inner membrane2.43E-02
37GO:0016021: integral component of membrane2.85E-02
38GO:0010287: plastoglobule2.89E-02
39GO:0005770: late endosome2.89E-02
40GO:0019898: extrinsic component of membrane3.20E-02
41GO:0016020: membrane3.90E-02
42GO:0009295: nucleoid4.02E-02
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Gene type



Gene DE type