co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
2	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
3	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
4	GO:1902009: positive regulation of toxin transport	0.00E+00
5	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
6	GO:0071985: multivesicular body sorting pathway	0.00E+00
7	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
8	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
9	GO:0005993: trehalose catabolic process	0.00E+00
10	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
11	GO:0016192: vesicle-mediated transport	3.96E-09
12	GO:0006102: isocitrate metabolic process	2.22E-04
13	GO:0016559: peroxisome fission	2.22E-04
14	GO:0006680: glucosylceramide catabolic process	2.43E-04
15	GO:1900384: regulation of flavonol biosynthetic process	2.43E-04
16	GO:0006083: acetate metabolic process	2.43E-04
17	GO:0000077: DNA damage checkpoint	2.43E-04
18	GO:0042350: GDP-L-fucose biosynthetic process	2.43E-04
19	GO:1990641: response to iron ion starvation	2.43E-04
20	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.43E-04
21	GO:0015031: protein transport	4.04E-04
22	GO:0006101: citrate metabolic process	5.39E-04
23	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.39E-04
24	GO:0015709: thiosulfate transport	5.39E-04
25	GO:0071422: succinate transmembrane transport	5.39E-04
26	GO:0009805: coumarin biosynthetic process	5.39E-04
27	GO:0042853: L-alanine catabolic process	5.39E-04
28	GO:0040020: regulation of meiotic nuclear division	5.39E-04
29	GO:0055046: microgametogenesis	6.91E-04
30	GO:0006099: tricarboxylic acid cycle	8.53E-04
31	GO:0007033: vacuole organization	8.68E-04
32	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	8.75E-04
33	GO:0010253: UDP-rhamnose biosynthetic process	8.75E-04
34	GO:0044375: regulation of peroxisome size	8.75E-04
35	GO:0072661: protein targeting to plasma membrane	8.75E-04
36	GO:0009410: response to xenobiotic stimulus	8.75E-04
37	GO:0000162: tryptophan biosynthetic process	9.63E-04
38	GO:0006631: fatty acid metabolic process	9.99E-04
39	GO:0030150: protein import into mitochondrial matrix	1.06E-03
40	GO:0009226: nucleotide-sugar biosynthetic process	1.25E-03
41	GO:0010731: protein glutathionylation	1.25E-03
42	GO:0055070: copper ion homeostasis	1.25E-03
43	GO:0001676: long-chain fatty acid metabolic process	1.25E-03
44	GO:0015729: oxaloacetate transport	1.25E-03
45	GO:0072334: UDP-galactose transmembrane transport	1.25E-03
46	GO:1902584: positive regulation of response to water deprivation	1.67E-03
47	GO:0006621: protein retention in ER lumen	1.67E-03
48	GO:0071423: malate transmembrane transport	2.13E-03
49	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.13E-03
50	GO:0006097: glyoxylate cycle	2.13E-03
51	GO:0045927: positive regulation of growth	2.13E-03
52	GO:0006623: protein targeting to vacuole	2.40E-03
53	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.62E-03
54	GO:0010315: auxin efflux	2.62E-03
55	GO:0035435: phosphate ion transmembrane transport	2.62E-03
56	GO:1900425: negative regulation of defense response to bacterium	2.62E-03
57	GO:0006014: D-ribose metabolic process	2.62E-03
58	GO:0006555: methionine metabolic process	2.62E-03
59	GO:0034389: lipid particle organization	3.15E-03
60	GO:0080113: regulation of seed growth	3.15E-03
61	GO:0019509: L-methionine salvage from methylthioadenosine	3.15E-03
62	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.15E-03
63	GO:0008272: sulfate transport	3.72E-03
64	GO:0006744: ubiquinone biosynthetic process	3.72E-03
65	GO:0080186: developmental vegetative growth	3.72E-03
66	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.72E-03
67	GO:0006906: vesicle fusion	4.14E-03
68	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.31E-03
69	GO:0006605: protein targeting	4.31E-03
70	GO:0045010: actin nucleation	4.31E-03
71	GO:0007155: cell adhesion	4.31E-03
72	GO:0006972: hyperosmotic response	4.93E-03
73	GO:0009699: phenylpropanoid biosynthetic process	4.93E-03
74	GO:0006002: fructose 6-phosphate metabolic process	4.93E-03
75	GO:0015996: chlorophyll catabolic process	4.93E-03
76	GO:0010332: response to gamma radiation	5.59E-03
77	GO:0000902: cell morphogenesis	5.59E-03
78	GO:0015780: nucleotide-sugar transport	5.59E-03
79	GO:0090332: stomatal closure	6.27E-03
80	GO:0000103: sulfate assimilation	6.99E-03
81	GO:0051555: flavonol biosynthetic process	6.99E-03
82	GO:0006887: exocytosis	7.28E-03
83	GO:0000209: protein polyubiquitination	8.22E-03
84	GO:0000266: mitochondrial fission	8.49E-03
85	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	9.29E-03
86	GO:2000012: regulation of auxin polar transport	9.29E-03
87	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.58E-03
88	GO:0002237: response to molecule of bacterial origin	1.01E-02
89	GO:0007015: actin filament organization	1.01E-02
90	GO:0051603: proteolysis involved in cellular protein catabolic process	1.10E-02
91	GO:0090351: seedling development	1.10E-02
92	GO:0010053: root epidermal cell differentiation	1.10E-02
93	GO:0009225: nucleotide-sugar metabolic process	1.10E-02
94	GO:0007031: peroxisome organization	1.10E-02
95	GO:0007030: Golgi organization	1.10E-02
96	GO:0034976: response to endoplasmic reticulum stress	1.18E-02
97	GO:0009863: salicylic acid mediated signaling pathway	1.27E-02
98	GO:0006289: nucleotide-excision repair	1.27E-02
99	GO:0008299: isoprenoid biosynthetic process	1.37E-02
100	GO:0006334: nucleosome assembly	1.46E-02
101	GO:0019915: lipid storage	1.46E-02
102	GO:0006886: intracellular protein transport	1.51E-02
103	GO:0009814: defense response, incompatible interaction	1.56E-02
104	GO:0030433: ubiquitin-dependent ERAD pathway	1.56E-02
105	GO:0031348: negative regulation of defense response	1.56E-02
106	GO:0019748: secondary metabolic process	1.56E-02
107	GO:0006457: protein folding	1.58E-02
108	GO:0009411: response to UV	1.66E-02
109	GO:0006511: ubiquitin-dependent protein catabolic process	1.69E-02
110	GO:0009561: megagametogenesis	1.76E-02
111	GO:0042127: regulation of cell proliferation	1.76E-02
112	GO:0009306: protein secretion	1.76E-02
113	GO:0010584: pollen exine formation	1.76E-02
114	GO:0006810: transport	1.85E-02
115	GO:0046686: response to cadmium ion	2.05E-02
116	GO:0006662: glycerol ether metabolic process	2.07E-02
117	GO:0019252: starch biosynthetic process	2.29E-02
118	GO:0010193: response to ozone	2.41E-02
119	GO:0016032: viral process	2.52E-02
120	GO:0019760: glucosinolate metabolic process	2.76E-02
121	GO:0016579: protein deubiquitination	3.01E-02
122	GO:0006470: protein dephosphorylation	3.01E-02
123	GO:0007275: multicellular organism development	3.03E-02
124	GO:0001666: response to hypoxia	3.13E-02
125	GO:0009816: defense response to bacterium, incompatible interaction	3.26E-02
126	GO:0048767: root hair elongation	3.92E-02
127	GO:0006499: N-terminal protein myristoylation	4.05E-02
128	GO:0009407: toxin catabolic process	4.05E-02
129	GO:0000724: double-strand break repair via homologous recombination	4.33E-02
130	GO:0034599: cellular response to oxidative stress	4.62E-02
131	GO:0006839: mitochondrial transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
3	GO:0005046: KDEL sequence binding	0.00E+00
4	GO:0061133: endopeptidase activator activity	0.00E+00
5	GO:0016504: peptidase activator activity	0.00E+00
6	GO:0034338: short-chain carboxylesterase activity	0.00E+00
7	GO:0070577: lysine-acetylated histone binding	0.00E+00
8	GO:0008320: protein transmembrane transporter activity	3.08E-06
9	GO:0070628: proteasome binding	4.12E-05
10	GO:0030942: endoplasmic reticulum signal peptide binding	2.43E-04
11	GO:0032266: phosphatidylinositol-3-phosphate binding	2.43E-04
12	GO:0102293: pheophytinase b activity	2.43E-04
13	GO:0004348: glucosylceramidase activity	2.43E-04
14	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.43E-04
15	GO:0050577: GDP-L-fucose synthase activity	2.43E-04
16	GO:0003987: acetate-CoA ligase activity	2.43E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.43E-04
18	GO:0015927: trehalase activity	2.43E-04
19	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.39E-04
20	GO:0015117: thiosulfate transmembrane transporter activity	5.39E-04
21	GO:0048531: beta-1,3-galactosyltransferase activity	5.39E-04
22	GO:1901677: phosphate transmembrane transporter activity	5.39E-04
23	GO:0047746: chlorophyllase activity	5.39E-04
24	GO:0010297: heteropolysaccharide binding	5.39E-04
25	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.39E-04
26	GO:0003994: aconitate hydratase activity	5.39E-04
27	GO:0010280: UDP-L-rhamnose synthase activity	5.39E-04
28	GO:0050347: trans-octaprenyltranstransferase activity	5.39E-04
29	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	5.39E-04
30	GO:0000774: adenyl-nucleotide exchange factor activity	5.39E-04
31	GO:0008805: carbon-monoxide oxygenase activity	5.39E-04
32	GO:0015141: succinate transmembrane transporter activity	8.75E-04
33	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.75E-04
34	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.75E-04
35	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.75E-04
36	GO:0043130: ubiquitin binding	1.06E-03
37	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.25E-03
38	GO:0015131: oxaloacetate transmembrane transporter activity	1.25E-03
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.25E-03
40	GO:0017077: oxidative phosphorylation uncoupler activity	1.25E-03
41	GO:0004659: prenyltransferase activity	1.67E-03
42	GO:0004834: tryptophan synthase activity	1.67E-03
43	GO:0046923: ER retention sequence binding	1.67E-03
44	GO:0004623: phospholipase A2 activity	2.13E-03
45	GO:0005459: UDP-galactose transmembrane transporter activity	2.13E-03
46	GO:0016853: isomerase activity	2.24E-03
47	GO:0022857: transmembrane transporter activity	2.32E-03
48	GO:0051082: unfolded protein binding	2.51E-03
49	GO:0016208: AMP binding	2.62E-03
50	GO:0102391: decanoate--CoA ligase activity	3.15E-03
51	GO:0004747: ribokinase activity	3.15E-03
52	GO:0004656: procollagen-proline 4-dioxygenase activity	3.15E-03
53	GO:0003872: 6-phosphofructokinase activity	3.72E-03
54	GO:0015140: malate transmembrane transporter activity	3.72E-03
55	GO:0043295: glutathione binding	3.72E-03
56	GO:0004467: long-chain fatty acid-CoA ligase activity	3.72E-03
57	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.72E-03
58	GO:0052747: sinapyl alcohol dehydrogenase activity	4.31E-03
59	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.31E-03
60	GO:0008865: fructokinase activity	4.31E-03
61	GO:0008312: 7S RNA binding	4.31E-03
62	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.59E-03
63	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.13E-03
64	GO:0003746: translation elongation factor activity	6.13E-03
65	GO:0000149: SNARE binding	6.69E-03
66	GO:0030234: enzyme regulator activity	6.99E-03
67	GO:0004364: glutathione transferase activity	7.59E-03
68	GO:0004161: dimethylallyltranstransferase activity	7.73E-03
69	GO:0005484: SNAP receptor activity	7.90E-03
70	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.49E-03
71	GO:0015116: sulfate transmembrane transporter activity	8.49E-03
72	GO:0008378: galactosyltransferase activity	8.49E-03
73	GO:0031072: heat shock protein binding	9.29E-03
74	GO:0031624: ubiquitin conjugating enzyme binding	1.01E-02
75	GO:0004175: endopeptidase activity	1.01E-02
76	GO:0003712: transcription cofactor activity	1.10E-02
77	GO:0004867: serine-type endopeptidase inhibitor activity	1.10E-02
78	GO:0031625: ubiquitin protein ligase binding	1.18E-02
79	GO:0004725: protein tyrosine phosphatase activity	1.18E-02
80	GO:0061630: ubiquitin protein ligase activity	1.23E-02
81	GO:0051536: iron-sulfur cluster binding	1.27E-02
82	GO:0031418: L-ascorbic acid binding	1.27E-02
83	GO:0051087: chaperone binding	1.37E-02
84	GO:0004298: threonine-type endopeptidase activity	1.46E-02
85	GO:0008408: 3'-5' exonuclease activity	1.46E-02
86	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.46E-02
87	GO:0003756: protein disulfide isomerase activity	1.76E-02
88	GO:0005507: copper ion binding	1.82E-02
89	GO:0047134: protein-disulfide reductase activity	1.86E-02
90	GO:0005102: receptor binding	1.86E-02
91	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.96E-02
92	GO:0004527: exonuclease activity	2.07E-02
93	GO:0030170: pyridoxal phosphate binding	2.12E-02
94	GO:0050662: coenzyme binding	2.18E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	2.18E-02
96	GO:0004872: receptor activity	2.29E-02
97	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.41E-02
98	GO:0015297: antiporter activity	2.52E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.64E-02
100	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.88E-02
101	GO:0008483: transaminase activity	2.88E-02
102	GO:0051213: dioxygenase activity	3.13E-02
103	GO:0016887: ATPase activity	3.27E-02
104	GO:0042802: identical protein binding	3.35E-02
105	GO:0004806: triglyceride lipase activity	3.52E-02
106	GO:0030247: polysaccharide binding	3.52E-02
107	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.78E-02
108	GO:0050897: cobalt ion binding	4.19E-02
109	GO:0042393: histone binding	4.91E-02
110	GO:0051539: 4 iron, 4 sulfur cluster binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0031901: early endosome membrane	9.52E-06
2	GO:0005801: cis-Golgi network	1.32E-04
3	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.74E-04
4	GO:0045252: oxoglutarate dehydrogenase complex	2.43E-04
5	GO:0001405: presequence translocase-associated import motor	2.43E-04
6	GO:0032580: Golgi cisterna membrane	3.38E-04
7	GO:0005794: Golgi apparatus	4.39E-04
8	GO:0005788: endoplasmic reticulum lumen	4.58E-04
9	GO:0030134: ER to Golgi transport vesicle	5.39E-04
10	GO:0000814: ESCRT II complex	5.39E-04
11	GO:0005783: endoplasmic reticulum	6.00E-04
12	GO:0016021: integral component of membrane	6.35E-04
13	GO:0030658: transport vesicle membrane	1.25E-03
14	GO:0005839: proteasome core complex	1.28E-03
15	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.66E-03
16	GO:0005789: endoplasmic reticulum membrane	2.06E-03
17	GO:0005945: 6-phosphofructokinase complex	2.13E-03
18	GO:0016592: mediator complex	2.75E-03
19	GO:0005885: Arp2/3 protein complex	3.15E-03
20	GO:0030173: integral component of Golgi membrane	3.15E-03
21	GO:0005778: peroxisomal membrane	3.31E-03
22	GO:0031982: vesicle	4.31E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.93E-03
24	GO:0005811: lipid particle	4.93E-03
25	GO:0009514: glyoxysome	4.93E-03
26	GO:0005779: integral component of peroxisomal membrane	4.93E-03
27	GO:0030665: clathrin-coated vesicle membrane	6.27E-03
28	GO:0008540: proteasome regulatory particle, base subcomplex	6.27E-03
29	GO:0017119: Golgi transport complex	6.99E-03
30	GO:0031902: late endosome membrane	7.28E-03
31	GO:0031201: SNARE complex	7.28E-03
32	GO:0008541: proteasome regulatory particle, lid subcomplex	7.73E-03
33	GO:0005768: endosome	7.95E-03
34	GO:0000502: proteasome complex	1.07E-02
35	GO:0005769: early endosome	1.18E-02
36	GO:0005741: mitochondrial outer membrane	1.46E-02
37	GO:0005743: mitochondrial inner membrane	1.73E-02
38	GO:0005770: late endosome	2.07E-02
39	GO:0009504: cell plate	2.29E-02
40	GO:0019898: extrinsic component of membrane	2.29E-02
41	GO:0005615: extracellular space	2.95E-02
42	GO:0005737: cytoplasm	3.23E-02
43	GO:0005739: mitochondrion	3.35E-02
44	GO:0005886: plasma membrane	3.52E-02
45	GO:0000151: ubiquitin ligase complex	3.78E-02
46	GO:0005777: peroxisome	4.58E-02
47	GO:0000139: Golgi membrane	4.73E-02