co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006066: alcohol metabolic process	0.00E+00
2	GO:0006849: plasma membrane pyruvate transport	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0042793: transcription from plastid promoter	8.76E-06
6	GO:0006353: DNA-templated transcription, termination	2.31E-05
7	GO:0010206: photosystem II repair	3.71E-05
8	GO:0000476: maturation of 4.5S rRNA	5.64E-05
9	GO:0000967: rRNA 5'-end processing	5.64E-05
10	GO:0043686: co-translational protein modification	5.64E-05
11	GO:0043007: maintenance of rDNA	5.64E-05
12	GO:0005980: glycogen catabolic process	5.64E-05
13	GO:0009662: etioplast organization	1.37E-04
14	GO:0090342: regulation of cell aging	1.37E-04
15	GO:0071452: cellular response to singlet oxygen	1.37E-04
16	GO:0034470: ncRNA processing	1.37E-04
17	GO:0046739: transport of virus in multicellular host	3.41E-04
18	GO:0010601: positive regulation of auxin biosynthetic process	3.41E-04
19	GO:0006808: regulation of nitrogen utilization	4.56E-04
20	GO:0031365: N-terminal protein amino acid modification	5.78E-04
21	GO:0007094: mitotic spindle assembly checkpoint	5.78E-04
22	GO:0015995: chlorophyll biosynthetic process	6.28E-04
23	GO:0009658: chloroplast organization	7.02E-04
24	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.07E-04
25	GO:2000033: regulation of seed dormancy process	8.44E-04
26	GO:1901259: chloroplast rRNA processing	8.44E-04
27	GO:0010310: regulation of hydrogen peroxide metabolic process	8.44E-04
28	GO:0048437: floral organ development	9.85E-04
29	GO:0048564: photosystem I assembly	1.13E-03
30	GO:0042255: ribosome assembly	1.13E-03
31	GO:0010497: plasmodesmata-mediated intercellular transport	1.29E-03
32	GO:0006783: heme biosynthetic process	1.45E-03
33	GO:0010205: photoinhibition	1.62E-03
34	GO:1900865: chloroplast RNA modification	1.62E-03
35	GO:0031425: chloroplast RNA processing	1.62E-03
36	GO:0045036: protein targeting to chloroplast	1.79E-03
37	GO:0010629: negative regulation of gene expression	1.79E-03
38	GO:0006782: protoporphyrinogen IX biosynthetic process	1.79E-03
39	GO:0006508: proteolysis	1.96E-03
40	GO:0006396: RNA processing	2.13E-03
41	GO:0006820: anion transport	2.16E-03
42	GO:0009266: response to temperature stimulus	2.56E-03
43	GO:0080188: RNA-directed DNA methylation	2.76E-03
44	GO:0006633: fatty acid biosynthetic process	3.23E-03
45	GO:0006418: tRNA aminoacylation for protein translation	3.40E-03
46	GO:0051321: meiotic cell cycle	3.63E-03
47	GO:0006730: one-carbon metabolic process	3.86E-03
48	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.10E-03
49	GO:0008380: RNA splicing	4.23E-03
50	GO:0006814: sodium ion transport	5.35E-03
51	GO:0007059: chromosome segregation	5.35E-03
52	GO:0009556: microsporogenesis	5.61E-03
53	GO:0030163: protein catabolic process	6.43E-03
54	GO:0009828: plant-type cell wall loosening	6.71E-03
55	GO:0015979: photosynthesis	7.73E-03
56	GO:0009607: response to biotic stimulus	7.89E-03
57	GO:0016042: lipid catabolic process	9.72E-03
58	GO:0008152: metabolic process	1.10E-02
59	GO:0009664: plant-type cell wall organization	1.51E-02
60	GO:0006857: oligopeptide transport	1.67E-02
61	GO:0035556: intracellular signal transduction	1.88E-02
62	GO:0042545: cell wall modification	2.00E-02
63	GO:0009553: embryo sac development	2.00E-02
64	GO:0006457: protein folding	2.31E-02
65	GO:0045490: pectin catabolic process	3.02E-02
66	GO:0009826: unidimensional cell growth	4.01E-02
67	GO:0015031: protein transport	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	0.00E+00
2	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
3	GO:0097100: supercoiled DNA binding	0.00E+00
4	GO:0090711: FMN hydrolase activity	0.00E+00
5	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
6	GO:0004853: uroporphyrinogen decarboxylase activity	5.64E-05
7	GO:0042586: peptide deformylase activity	5.64E-05
8	GO:0004856: xylulokinase activity	5.64E-05
9	GO:0004645: phosphorylase activity	5.64E-05
10	GO:0008184: glycogen phosphorylase activity	5.64E-05
11	GO:0016630: protochlorophyllide reductase activity	1.37E-04
12	GO:0050833: pyruvate transmembrane transporter activity	2.34E-04
13	GO:0017150: tRNA dihydrouridine synthase activity	2.34E-04
14	GO:0008508: bile acid:sodium symporter activity	3.41E-04
15	GO:0008237: metallopeptidase activity	4.79E-04
16	GO:0003959: NADPH dehydrogenase activity	5.78E-04
17	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.78E-04
18	GO:0004629: phospholipase C activity	7.07E-04
19	GO:0004222: metalloendopeptidase activity	7.61E-04
20	GO:0004435: phosphatidylinositol phospholipase C activity	8.44E-04
21	GO:0004525: ribonuclease III activity	1.13E-03
22	GO:0071949: FAD binding	1.45E-03
23	GO:0008327: methyl-CpG binding	1.97E-03
24	GO:0004089: carbonate dehydratase activity	2.36E-03
25	GO:0031072: heat shock protein binding	2.36E-03
26	GO:0004252: serine-type endopeptidase activity	2.86E-03
27	GO:0004176: ATP-dependent peptidase activity	3.63E-03
28	GO:0003727: single-stranded RNA binding	4.34E-03
29	GO:0042802: identical protein binding	4.50E-03
30	GO:0004812: aminoacyl-tRNA ligase activity	4.58E-03
31	GO:0050660: flavin adenine dinucleotide binding	6.32E-03
32	GO:0008236: serine-type peptidase activity	8.81E-03
33	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.13E-03
34	GO:0016491: oxidoreductase activity	1.06E-02
35	GO:0043621: protein self-association	1.36E-02
36	GO:0003690: double-stranded DNA binding	1.63E-02
37	GO:0016298: lipase activity	1.63E-02
38	GO:0045330: aspartyl esterase activity	1.71E-02
39	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.83E-02
40	GO:0030599: pectinesterase activity	1.96E-02
41	GO:0051082: unfolded protein binding	2.04E-02
42	GO:0016740: transferase activity	2.18E-02
43	GO:0004386: helicase activity	2.18E-02
44	GO:0019843: rRNA binding	2.40E-02
45	GO:0030170: pyridoxal phosphate binding	2.58E-02
46	GO:0005525: GTP binding	2.93E-02
47	GO:0003723: RNA binding	3.21E-02
48	GO:0044212: transcription regulatory region DNA binding	3.61E-02
49	GO:0005215: transporter activity	3.98E-02
50	GO:0008168: methyltransferase activity	4.01E-02
51	GO:0008233: peptidase activity	4.74E-02
52	GO:0004497: monooxygenase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.94E-17
2	GO:0009570: chloroplast stroma	3.07E-06
3	GO:0009534: chloroplast thylakoid	9.47E-05
4	GO:0009941: chloroplast envelope	2.62E-04
5	GO:0005828: kinetochore microtubule	4.56E-04
6	GO:0009295: nucleoid	4.79E-04
7	GO:0000776: kinetochore	5.78E-04
8	GO:0009840: chloroplastic endopeptidase Clp complex	8.44E-04
9	GO:0005655: nucleolar ribonuclease P complex	8.44E-04
10	GO:0000777: condensed chromosome kinetochore	8.44E-04
11	GO:0042644: chloroplast nucleoid	1.45E-03
12	GO:0005876: spindle microtubule	1.62E-03
13	GO:0009508: plastid chromosome	2.36E-03
14	GO:0009532: plastid stroma	3.63E-03
15	GO:0009579: thylakoid	3.82E-03
16	GO:0009535: chloroplast thylakoid membrane	4.94E-03
17	GO:0031969: chloroplast membrane	6.77E-03
18	GO:0030529: intracellular ribonucleoprotein complex	7.59E-03
19	GO:0009707: chloroplast outer membrane	9.13E-03
20	GO:0009536: plastid	9.66E-03
21	GO:0031977: thylakoid lumen	1.22E-02
22	GO:0009706: chloroplast inner membrane	2.04E-02
23	GO:0009543: chloroplast thylakoid lumen	2.40E-02
24	GO:0005623: cell	2.45E-02
25	GO:0009524: phragmoplast	2.49E-02
26	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.40E-02