co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
2	GO:0006858: extracellular transport	0.00E+00
3	GO:0036258: multivesicular body assembly	0.00E+00
4	GO:0006511: ubiquitin-dependent protein catabolic process	7.37E-14
5	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.80E-07
6	GO:0006461: protein complex assembly	2.01E-05
7	GO:0030433: ubiquitin-dependent ERAD pathway	2.33E-05
8	GO:0051603: proteolysis involved in cellular protein catabolic process	3.96E-05
9	GO:0030163: protein catabolic process	7.64E-05
10	GO:0071586: CAAX-box protein processing	1.20E-04
11	GO:0019628: urate catabolic process	1.20E-04
12	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.20E-04
13	GO:0035494: SNARE complex disassembly	1.20E-04
14	GO:0006144: purine nucleobase metabolic process	1.20E-04
15	GO:0080120: CAAX-box protein maturation	1.20E-04
16	GO:0010372: positive regulation of gibberellin biosynthetic process	2.77E-04
17	GO:0051788: response to misfolded protein	2.77E-04
18	GO:0006996: organelle organization	2.77E-04
19	GO:0045039: protein import into mitochondrial inner membrane	4.58E-04
20	GO:0010498: proteasomal protein catabolic process	4.58E-04
21	GO:0010359: regulation of anion channel activity	4.58E-04
22	GO:0043617: cellular response to sucrose starvation	4.58E-04
23	GO:0090630: activation of GTPase activity	4.58E-04
24	GO:0009647: skotomorphogenesis	6.57E-04
25	GO:0010255: glucose mediated signaling pathway	6.57E-04
26	GO:0070676: intralumenal vesicle formation	6.57E-04
27	GO:0001676: long-chain fatty acid metabolic process	6.57E-04
28	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	6.57E-04
29	GO:0009646: response to absence of light	8.58E-04
30	GO:0010363: regulation of plant-type hypersensitive response	8.72E-04
31	GO:0051205: protein insertion into membrane	8.72E-04
32	GO:0046686: response to cadmium ion	9.24E-04
33	GO:0018279: protein N-linked glycosylation via asparagine	1.10E-03
34	GO:0005513: detection of calcium ion	1.10E-03
35	GO:0043248: proteasome assembly	1.35E-03
36	GO:0042176: regulation of protein catabolic process	1.35E-03
37	GO:0007035: vacuolar acidification	1.35E-03
38	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.61E-03
39	GO:0009612: response to mechanical stimulus	1.61E-03
40	GO:0048528: post-embryonic root development	1.89E-03
41	GO:0000338: protein deneddylation	1.89E-03
42	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.19E-03
43	GO:0006402: mRNA catabolic process	2.19E-03
44	GO:0031540: regulation of anthocyanin biosynthetic process	2.19E-03
45	GO:0006102: isocitrate metabolic process	2.19E-03
46	GO:0006099: tricarboxylic acid cycle	2.38E-03
47	GO:0015031: protein transport	2.49E-03
48	GO:0010120: camalexin biosynthetic process	2.50E-03
49	GO:0006972: hyperosmotic response	2.50E-03
50	GO:0046685: response to arsenic-containing substance	2.82E-03
51	GO:0055085: transmembrane transport	3.34E-03
52	GO:0009682: induced systemic resistance	3.88E-03
53	GO:0072593: reactive oxygen species metabolic process	3.88E-03
54	GO:0043085: positive regulation of catalytic activity	3.88E-03
55	GO:0009651: response to salt stress	4.19E-03
56	GO:0006790: sulfur compound metabolic process	4.26E-03
57	GO:0006820: anion transport	4.26E-03
58	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	4.26E-03
59	GO:0006096: glycolytic process	4.64E-03
60	GO:0006829: zinc II ion transport	4.64E-03
61	GO:0006807: nitrogen compound metabolic process	4.64E-03
62	GO:0034605: cellular response to heat	5.04E-03
63	GO:0009553: embryo sac development	5.42E-03
64	GO:0007031: peroxisome organization	5.46E-03
65	GO:0046854: phosphatidylinositol phosphorylation	5.46E-03
66	GO:0034976: response to endoplasmic reticulum stress	5.88E-03
67	GO:0042744: hydrogen peroxide catabolic process	7.95E-03
68	GO:0010227: floral organ abscission	8.18E-03
69	GO:0009306: protein secretion	8.66E-03
70	GO:0010089: xylem development	8.66E-03
71	GO:0042147: retrograde transport, endosome to Golgi	9.17E-03
72	GO:0051028: mRNA transport	9.17E-03
73	GO:0015991: ATP hydrolysis coupled proton transport	9.68E-03
74	GO:0010118: stomatal movement	9.68E-03
75	GO:0009735: response to cytokinin	9.79E-03
76	GO:0006662: glycerol ether metabolic process	1.02E-02
77	GO:0048868: pollen tube development	1.02E-02
78	GO:0015986: ATP synthesis coupled proton transport	1.07E-02
79	GO:0061025: membrane fusion	1.07E-02
80	GO:0048825: cotyledon development	1.13E-02
81	GO:0055072: iron ion homeostasis	1.13E-02
82	GO:0009617: response to bacterium	1.15E-02
83	GO:0010193: response to ozone	1.18E-02
84	GO:0031047: gene silencing by RNA	1.24E-02
85	GO:0009567: double fertilization forming a zygote and endosperm	1.36E-02
86	GO:0006914: autophagy	1.36E-02
87	GO:0009826: unidimensional cell growth	1.44E-02
88	GO:0016579: protein deubiquitination	1.47E-02
89	GO:0006888: ER to Golgi vesicle-mediated transport	1.72E-02
90	GO:0006950: response to stress	1.72E-02
91	GO:0010311: lateral root formation	1.92E-02
92	GO:0006811: ion transport	1.99E-02
93	GO:0006499: N-terminal protein myristoylation	1.99E-02
94	GO:0010119: regulation of stomatal movement	2.05E-02
95	GO:0010043: response to zinc ion	2.05E-02
96	GO:0045454: cell redox homeostasis	2.23E-02
97	GO:0034599: cellular response to oxidative stress	2.26E-02
98	GO:0006886: intracellular protein transport	2.30E-02
99	GO:0030001: metal ion transport	2.41E-02
100	GO:0006631: fatty acid metabolic process	2.48E-02
101	GO:0006897: endocytosis	2.48E-02
102	GO:0009640: photomorphogenesis	2.63E-02
103	GO:0009744: response to sucrose	2.63E-02
104	GO:0006855: drug transmembrane transport	2.93E-02
105	GO:0009664: plant-type cell wall organization	3.09E-02
106	GO:0009809: lignin biosynthetic process	3.25E-02
107	GO:0009585: red, far-red light phototransduction	3.25E-02
108	GO:0009736: cytokinin-activated signaling pathway	3.25E-02
109	GO:0009624: response to nematode	4.17E-02
110	GO:0018105: peptidyl-serine phosphorylation	4.26E-02
111	GO:0009611: response to wounding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
4	GO:0004846: urate oxidase activity	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	2.58E-13
6	GO:0008233: peptidase activity	1.39E-08
7	GO:0036402: proteasome-activating ATPase activity	1.80E-07
8	GO:0017025: TBP-class protein binding	1.00E-05
9	GO:0019786: Atg8-specific protease activity	1.20E-04
10	GO:0048037: cofactor binding	1.20E-04
11	GO:0004743: pyruvate kinase activity	1.41E-04
12	GO:0030955: potassium ion binding	1.41E-04
13	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.77E-04
14	GO:0019779: Atg8 activating enzyme activity	2.77E-04
15	GO:0008517: folic acid transporter activity	2.77E-04
16	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.77E-04
17	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.58E-04
18	GO:0005483: soluble NSF attachment protein activity	4.58E-04
19	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	4.58E-04
20	GO:0000166: nucleotide binding	4.76E-04
21	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.57E-04
22	GO:0019905: syntaxin binding	8.72E-04
23	GO:0019776: Atg8 ligase activity	8.72E-04
24	GO:0004518: nuclease activity	1.04E-03
25	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.10E-03
26	GO:0051117: ATPase binding	1.35E-03
27	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.35E-03
28	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.35E-03
29	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.61E-03
30	GO:0102391: decanoate--CoA ligase activity	1.61E-03
31	GO:0004656: procollagen-proline 4-dioxygenase activity	1.61E-03
32	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.63E-03
33	GO:0016887: ATPase activity	1.89E-03
34	GO:0004467: long-chain fatty acid-CoA ligase activity	1.89E-03
35	GO:0015288: porin activity	2.19E-03
36	GO:0008308: voltage-gated anion channel activity	2.50E-03
37	GO:0008047: enzyme activator activity	3.51E-03
38	GO:0030234: enzyme regulator activity	3.51E-03
39	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.51E-03
40	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.88E-03
41	GO:0008559: xenobiotic-transporting ATPase activity	3.88E-03
42	GO:0046872: metal ion binding	4.08E-03
43	GO:0004175: endopeptidase activity	5.04E-03
44	GO:0043130: ubiquitin binding	6.32E-03
45	GO:0031418: L-ascorbic acid binding	6.32E-03
46	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.22E-03
47	GO:0008565: protein transporter activity	8.35E-03
48	GO:0003756: protein disulfide isomerase activity	8.66E-03
49	GO:0047134: protein-disulfide reductase activity	9.17E-03
50	GO:0046873: metal ion transmembrane transporter activity	1.02E-02
51	GO:0016853: isomerase activity	1.07E-02
52	GO:0004791: thioredoxin-disulfide reductase activity	1.07E-02
53	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.18E-02
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.23E-02
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-02
56	GO:0008237: metallopeptidase activity	1.41E-02
57	GO:0000287: magnesium ion binding	1.47E-02
58	GO:0004601: peroxidase activity	1.50E-02
59	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.66E-02
60	GO:0004683: calmodulin-dependent protein kinase activity	1.72E-02
61	GO:0005516: calmodulin binding	1.84E-02
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.85E-02
63	GO:0005096: GTPase activator activity	1.92E-02
64	GO:0004222: metalloendopeptidase activity	1.99E-02
65	GO:0016787: hydrolase activity	2.13E-02
66	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.19E-02
67	GO:0005509: calcium ion binding	2.42E-02
68	GO:0035091: phosphatidylinositol binding	2.78E-02
69	GO:0005198: structural molecule activity	2.85E-02
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.25E-02
71	GO:0015035: protein disulfide oxidoreductase activity	4.26E-02
72	GO:0008026: ATP-dependent helicase activity	4.35E-02
73	GO:0005524: ATP binding	4.45E-02
74	GO:0020037: heme binding	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.25E-22
2	GO:0005839: proteasome core complex	2.58E-13
3	GO:0031597: cytosolic proteasome complex	3.19E-07
4	GO:0031595: nuclear proteasome complex	5.23E-07
5	GO:0019773: proteasome core complex, alpha-subunit complex	1.19E-06
6	GO:0008540: proteasome regulatory particle, base subcomplex	2.32E-06
7	GO:0005774: vacuolar membrane	2.52E-06
8	GO:0005829: cytosol	2.91E-06
9	GO:0008541: proteasome regulatory particle, lid subcomplex	4.07E-06
10	GO:0005773: vacuole	8.46E-05
11	GO:0012510: trans-Golgi network transport vesicle membrane	1.20E-04
12	GO:0016442: RISC complex	1.20E-04
13	GO:0046861: glyoxysomal membrane	4.58E-04
14	GO:0005775: vacuolar lumen	6.57E-04
15	GO:0005776: autophagosome	8.72E-04
16	GO:0016471: vacuolar proton-transporting V-type ATPase complex	8.72E-04
17	GO:0000813: ESCRT I complex	1.10E-03
18	GO:0008250: oligosaccharyltransferase complex	1.10E-03
19	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.10E-03
20	GO:0030904: retromer complex	1.35E-03
21	GO:0005618: cell wall	1.80E-03
22	GO:0000325: plant-type vacuole	2.08E-03
23	GO:0000421: autophagosome membrane	2.19E-03
24	GO:0009514: glyoxysome	2.50E-03
25	GO:0046930: pore complex	2.50E-03
26	GO:0031902: late endosome membrane	2.70E-03
27	GO:0008180: COP9 signalosome	2.82E-03
28	GO:0010494: cytoplasmic stress granule	2.82E-03
29	GO:0048471: perinuclear region of cytoplasm	3.88E-03
30	GO:0005635: nuclear envelope	4.21E-03
31	GO:0005665: DNA-directed RNA polymerase II, core complex	4.26E-03
32	GO:0030176: integral component of endoplasmic reticulum membrane	5.46E-03
33	GO:0000419: DNA-directed RNA polymerase V complex	5.88E-03
34	GO:0005741: mitochondrial outer membrane	7.22E-03
35	GO:0031410: cytoplasmic vesicle	7.69E-03
36	GO:0009506: plasmodesma	9.42E-03
37	GO:0000932: P-body	1.54E-02
38	GO:0009707: chloroplast outer membrane	1.85E-02
39	GO:0005643: nuclear pore	1.85E-02
40	GO:0005794: Golgi apparatus	1.89E-02
41	GO:0005802: trans-Golgi network	1.99E-02
42	GO:0005886: plasma membrane	2.03E-02
43	GO:0005768: endosome	2.34E-02
44	GO:0031201: SNARE complex	2.48E-02
45	GO:0005737: cytoplasm	3.21E-02
46	GO:0009505: plant-type cell wall	3.54E-02
47	GO:0005834: heterotrimeric G-protein complex	3.83E-02
48	GO:0048046: apoplast	4.61E-02
49	GO:0005783: endoplasmic reticulum	4.61E-02
50	GO:0022626: cytosolic ribosome	4.64E-02
51	GO:0005623: cell	4.99E-02