co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0000373: Group II intron splicing	5.61E-06
9	GO:0046620: regulation of organ growth	8.11E-05
10	GO:0009926: auxin polar transport	4.24E-04
11	GO:0009733: response to auxin	5.27E-04
12	GO:0009734: auxin-activated signaling pathway	5.61E-04
13	GO:0043087: regulation of GTPase activity	7.84E-04
14	GO:0015904: tetracycline transport	7.84E-04
15	GO:0051013: microtubule severing	7.84E-04
16	GO:0034757: negative regulation of iron ion transport	7.84E-04
17	GO:0070509: calcium ion import	7.84E-04
18	GO:0006438: valyl-tRNA aminoacylation	7.84E-04
19	GO:0040008: regulation of growth	8.55E-04
20	GO:0000160: phosphorelay signal transduction system	1.08E-03
21	GO:0000105: histidine biosynthetic process	1.24E-03
22	GO:0018026: peptidyl-lysine monomethylation	1.70E-03
23	GO:0001736: establishment of planar polarity	1.70E-03
24	GO:0080009: mRNA methylation	1.70E-03
25	GO:0009786: regulation of asymmetric cell division	1.70E-03
26	GO:0031648: protein destabilization	1.70E-03
27	GO:0001682: tRNA 5'-leader removal	1.70E-03
28	GO:2000123: positive regulation of stomatal complex development	1.70E-03
29	GO:0010024: phytochromobilin biosynthetic process	1.70E-03
30	GO:0048255: mRNA stabilization	1.70E-03
31	GO:0061062: regulation of nematode larval development	1.70E-03
32	GO:0010271: regulation of chlorophyll catabolic process	1.70E-03
33	GO:0009958: positive gravitropism	1.84E-03
34	GO:0048829: root cap development	2.52E-03
35	GO:0051604: protein maturation	2.81E-03
36	GO:0071398: cellular response to fatty acid	2.81E-03
37	GO:0030029: actin filament-based process	2.81E-03
38	GO:0045910: negative regulation of DNA recombination	2.81E-03
39	GO:0080117: secondary growth	2.81E-03
40	GO:0045037: protein import into chloroplast stroma	3.35E-03
41	GO:0010582: floral meristem determinacy	3.35E-03
42	GO:0009736: cytokinin-activated signaling pathway	3.38E-03
43	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.68E-03
44	GO:0009451: RNA modification	3.76E-03
45	GO:0009725: response to hormone	3.81E-03
46	GO:2000904: regulation of starch metabolic process	4.09E-03
47	GO:1990019: protein storage vacuole organization	4.09E-03
48	GO:0010371: regulation of gibberellin biosynthetic process	4.09E-03
49	GO:0051513: regulation of monopolar cell growth	4.09E-03
50	GO:0051639: actin filament network formation	4.09E-03
51	GO:0034059: response to anoxia	4.09E-03
52	GO:0010239: chloroplast mRNA processing	4.09E-03
53	GO:0044211: CTP salvage	4.09E-03
54	GO:0007276: gamete generation	4.09E-03
55	GO:0009825: multidimensional cell growth	4.84E-03
56	GO:0009793: embryo development ending in seed dormancy	5.02E-03
57	GO:0045892: negative regulation of transcription, DNA-templated	5.07E-03
58	GO:0008295: spermidine biosynthetic process	5.53E-03
59	GO:0044206: UMP salvage	5.53E-03
60	GO:0009956: radial pattern formation	5.53E-03
61	GO:0009755: hormone-mediated signaling pathway	5.53E-03
62	GO:0051764: actin crosslink formation	5.53E-03
63	GO:2000038: regulation of stomatal complex development	5.53E-03
64	GO:0006021: inositol biosynthetic process	5.53E-03
65	GO:0051017: actin filament bundle assembly	6.01E-03
66	GO:0048497: maintenance of floral organ identity	7.11E-03
67	GO:0009107: lipoate biosynthetic process	7.11E-03
68	GO:0016123: xanthophyll biosynthetic process	7.11E-03
69	GO:0010438: cellular response to sulfur starvation	7.11E-03
70	GO:0010158: abaxial cell fate specification	7.11E-03
71	GO:0010375: stomatal complex patterning	7.11E-03
72	GO:0080110: sporopollenin biosynthetic process	7.11E-03
73	GO:0009696: salicylic acid metabolic process	7.11E-03
74	GO:0009867: jasmonic acid mediated signaling pathway	7.42E-03
75	GO:0071215: cellular response to abscisic acid stimulus	8.76E-03
76	GO:0010358: leaf shaping	8.84E-03
77	GO:0009913: epidermal cell differentiation	8.84E-03
78	GO:0016554: cytidine to uridine editing	8.84E-03
79	GO:1902456: regulation of stomatal opening	8.84E-03
80	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	8.84E-03
81	GO:0042793: transcription from plastid promoter	8.84E-03
82	GO:0048831: regulation of shoot system development	8.84E-03
83	GO:0003006: developmental process involved in reproduction	8.84E-03
84	GO:0006206: pyrimidine nucleobase metabolic process	8.84E-03
85	GO:0042127: regulation of cell proliferation	9.54E-03
86	GO:0009744: response to sucrose	1.03E-02
87	GO:0048509: regulation of meristem development	1.07E-02
88	GO:0031930: mitochondria-nucleus signaling pathway	1.07E-02
89	GO:0030488: tRNA methylation	1.07E-02
90	GO:0010019: chloroplast-nucleus signaling pathway	1.07E-02
91	GO:0008033: tRNA processing	1.12E-02
92	GO:0010087: phloem or xylem histogenesis	1.12E-02
93	GO:0010305: leaf vascular tissue pattern formation	1.21E-02
94	GO:0009741: response to brassinosteroid	1.21E-02
95	GO:0010444: guard mother cell differentiation	1.27E-02
96	GO:0000082: G1/S transition of mitotic cell cycle	1.27E-02
97	GO:0015693: magnesium ion transport	1.27E-02
98	GO:0009610: response to symbiotic fungus	1.27E-02
99	GO:0048528: post-embryonic root development	1.27E-02
100	GO:1900056: negative regulation of leaf senescence	1.27E-02
101	GO:0010050: vegetative phase change	1.27E-02
102	GO:0010098: suspensor development	1.27E-02
103	GO:0007018: microtubule-based movement	1.30E-02
104	GO:2000070: regulation of response to water deprivation	1.48E-02
105	GO:0010492: maintenance of shoot apical meristem identity	1.48E-02
106	GO:0009231: riboflavin biosynthetic process	1.48E-02
107	GO:0010439: regulation of glucosinolate biosynthetic process	1.48E-02
108	GO:0009819: drought recovery	1.48E-02
109	GO:0009850: auxin metabolic process	1.48E-02
110	GO:0071554: cell wall organization or biogenesis	1.50E-02
111	GO:0010583: response to cyclopentenone	1.60E-02
112	GO:0031047: gene silencing by RNA	1.60E-02
113	GO:0032544: plastid translation	1.71E-02
114	GO:0071482: cellular response to light stimulus	1.71E-02
115	GO:0007186: G-protein coupled receptor signaling pathway	1.71E-02
116	GO:0010497: plasmodesmata-mediated intercellular transport	1.71E-02
117	GO:0009657: plastid organization	1.71E-02
118	GO:0009828: plant-type cell wall loosening	1.82E-02
119	GO:0048507: meristem development	1.94E-02
120	GO:0048589: developmental growth	1.94E-02
121	GO:0009056: catabolic process	1.94E-02
122	GO:0051865: protein autoubiquitination	1.94E-02
123	GO:0006098: pentose-phosphate shunt	1.94E-02
124	GO:0046916: cellular transition metal ion homeostasis	1.94E-02
125	GO:0048316: seed development	1.95E-02
126	GO:0010027: thylakoid membrane organization	2.18E-02
127	GO:0016573: histone acetylation	2.19E-02
128	GO:0006779: porphyrin-containing compound biosynthetic process	2.19E-02
129	GO:0009098: leucine biosynthetic process	2.19E-02
130	GO:1900865: chloroplast RNA modification	2.19E-02
131	GO:0016571: histone methylation	2.19E-02
132	GO:0009641: shade avoidance	2.44E-02
133	GO:0006298: mismatch repair	2.44E-02
134	GO:0016441: posttranscriptional gene silencing	2.44E-02
135	GO:0006949: syncytium formation	2.44E-02
136	GO:0031627: telomeric loop formation	2.44E-02
137	GO:0009826: unidimensional cell growth	2.44E-02
138	GO:0009299: mRNA transcription	2.44E-02
139	GO:0006782: protoporphyrinogen IX biosynthetic process	2.44E-02
140	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.44E-02
141	GO:0006535: cysteine biosynthetic process from serine	2.44E-02
142	GO:0009658: chloroplast organization	2.58E-02
143	GO:0009750: response to fructose	2.71E-02
144	GO:0048765: root hair cell differentiation	2.71E-02
145	GO:0009682: induced systemic resistance	2.71E-02
146	GO:0009073: aromatic amino acid family biosynthetic process	2.71E-02
147	GO:0043085: positive regulation of catalytic activity	2.71E-02
148	GO:0008285: negative regulation of cell proliferation	2.71E-02
149	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.98E-02
150	GO:0006790: sulfur compound metabolic process	2.98E-02
151	GO:0005983: starch catabolic process	2.98E-02
152	GO:0010152: pollen maturation	2.98E-02
153	GO:0010311: lateral root formation	2.99E-02
154	GO:0009691: cytokinin biosynthetic process	3.27E-02
155	GO:0006094: gluconeogenesis	3.27E-02
156	GO:0010588: cotyledon vascular tissue pattern formation	3.27E-02
157	GO:0030048: actin filament-based movement	3.27E-02
158	GO:0010102: lateral root morphogenesis	3.27E-02
159	GO:0006865: amino acid transport	3.45E-02
160	GO:0009933: meristem structural organization	3.56E-02
161	GO:0009887: animal organ morphogenesis	3.56E-02
162	GO:0010540: basipetal auxin transport	3.56E-02
163	GO:0009266: response to temperature stimulus	3.56E-02
164	GO:0006302: double-strand break repair	3.56E-02
165	GO:0048467: gynoecium development	3.56E-02
166	GO:0010207: photosystem II assembly	3.56E-02
167	GO:0010020: chloroplast fission	3.56E-02
168	GO:0070588: calcium ion transmembrane transport	3.86E-02
169	GO:0046854: phosphatidylinositol phosphorylation	3.86E-02
170	GO:0080188: RNA-directed DNA methylation	3.86E-02
171	GO:0030001: metal ion transport	4.11E-02
172	GO:0000162: tryptophan biosynthetic process	4.18E-02
173	GO:0006631: fatty acid metabolic process	4.28E-02
174	GO:0006338: chromatin remodeling	4.49E-02
175	GO:0005992: trehalose biosynthetic process	4.49E-02
176	GO:0019344: cysteine biosynthetic process	4.49E-02
177	GO:0045454: cell redox homeostasis	4.59E-02
178	GO:0019953: sexual reproduction	4.82E-02
179	GO:0006418: tRNA aminoacylation for protein translation	4.82E-02
180	GO:0043622: cortical microtubule organization	4.82E-02
181	GO:0042546: cell wall biogenesis	4.83E-02
182	GO:0009735: response to cytokinin	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
4	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
7	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
8	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
9	GO:0071633: dihydroceramidase activity	0.00E+00
10	GO:0008805: carbon-monoxide oxygenase activity	2.59E-05
11	GO:0001872: (1->3)-beta-D-glucan binding	1.70E-04
12	GO:0010011: auxin binding	2.86E-04
13	GO:0003723: RNA binding	5.80E-04
14	GO:0052381: tRNA dimethylallyltransferase activity	7.84E-04
15	GO:0004832: valine-tRNA ligase activity	7.84E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	7.84E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	7.84E-04
18	GO:0010012: steroid 22-alpha hydroxylase activity	7.84E-04
19	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.84E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.84E-04
21	GO:0005227: calcium activated cation channel activity	7.84E-04
22	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.84E-04
23	GO:0008568: microtubule-severing ATPase activity	7.84E-04
24	GO:0004519: endonuclease activity	9.16E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.70E-03
26	GO:0050736: O-malonyltransferase activity	1.70E-03
27	GO:0009884: cytokinin receptor activity	1.70E-03
28	GO:0050017: L-3-cyanoalanine synthase activity	1.70E-03
29	GO:0017118: lipoyltransferase activity	1.70E-03
30	GO:0003852: 2-isopropylmalate synthase activity	1.70E-03
31	GO:0043425: bHLH transcription factor binding	1.70E-03
32	GO:0010296: prenylcysteine methylesterase activity	1.70E-03
33	GO:0016415: octanoyltransferase activity	1.70E-03
34	GO:0004047: aminomethyltransferase activity	1.70E-03
35	GO:0004766: spermidine synthase activity	1.70E-03
36	GO:0052832: inositol monophosphate 3-phosphatase activity	1.70E-03
37	GO:0008934: inositol monophosphate 1-phosphatase activity	1.70E-03
38	GO:0008493: tetracycline transporter activity	1.70E-03
39	GO:0052833: inositol monophosphate 4-phosphatase activity	1.70E-03
40	GO:0019156: isoamylase activity	1.70E-03
41	GO:0005034: osmosensor activity	2.81E-03
42	GO:0003913: DNA photolyase activity	2.81E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	2.81E-03
44	GO:0000156: phosphorelay response regulator activity	2.86E-03
45	GO:0080031: methyl salicylate esterase activity	4.09E-03
46	GO:0016279: protein-lysine N-methyltransferase activity	5.53E-03
47	GO:0004845: uracil phosphoribosyltransferase activity	5.53E-03
48	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.53E-03
49	GO:0010328: auxin influx transmembrane transporter activity	5.53E-03
50	GO:0019199: transmembrane receptor protein kinase activity	5.53E-03
51	GO:0003779: actin binding	5.55E-03
52	GO:0005096: GTPase activator activity	5.83E-03
53	GO:0005471: ATP:ADP antiporter activity	7.11E-03
54	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	7.11E-03
55	GO:0008725: DNA-3-methyladenine glycosylase activity	7.11E-03
56	GO:0004523: RNA-DNA hybrid ribonuclease activity	7.11E-03
57	GO:0030983: mismatched DNA binding	8.84E-03
58	GO:0080030: methyl indole-3-acetate esterase activity	8.84E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	8.84E-03
60	GO:0004526: ribonuclease P activity	8.84E-03
61	GO:0004709: MAP kinase kinase kinase activity	8.84E-03
62	GO:0004556: alpha-amylase activity	8.84E-03
63	GO:0019900: kinase binding	1.07E-02
64	GO:0004124: cysteine synthase activity	1.07E-02
65	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.07E-02
66	GO:0004849: uridine kinase activity	1.07E-02
67	GO:0016832: aldehyde-lyase activity	1.07E-02
68	GO:0043621: protein self-association	1.14E-02
69	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.21E-02
70	GO:0009881: photoreceptor activity	1.27E-02
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.51E-02
72	GO:0016301: kinase activity	1.57E-02
73	GO:0004518: nuclease activity	1.60E-02
74	GO:0051015: actin filament binding	1.71E-02
75	GO:0003724: RNA helicase activity	1.71E-02
76	GO:0046914: transition metal ion binding	1.71E-02
77	GO:0003777: microtubule motor activity	1.72E-02
78	GO:0005200: structural constituent of cytoskeleton	1.94E-02
79	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.94E-02
80	GO:0016413: O-acetyltransferase activity	2.06E-02
81	GO:0005525: GTP binding	2.39E-02
82	GO:0004673: protein histidine kinase activity	2.44E-02
83	GO:0004805: trehalose-phosphatase activity	2.44E-02
84	GO:0008047: enzyme activator activity	2.44E-02
85	GO:0015035: protein disulfide oxidoreductase activity	2.45E-02
86	GO:0030247: polysaccharide binding	2.57E-02
87	GO:0016788: hydrolase activity, acting on ester bonds	2.65E-02
88	GO:0008236: serine-type peptidase activity	2.71E-02
89	GO:0003691: double-stranded telomeric DNA binding	2.71E-02
90	GO:0015095: magnesium ion transmembrane transporter activity	3.27E-02
91	GO:0000155: phosphorelay sensor kinase activity	3.27E-02
92	GO:0005262: calcium channel activity	3.27E-02
93	GO:0009982: pseudouridine synthase activity	3.27E-02
94	GO:0003725: double-stranded RNA binding	3.27E-02
95	GO:0050897: cobalt ion binding	3.29E-02
96	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.56E-02
97	GO:0003774: motor activity	3.56E-02
98	GO:0003712: transcription cofactor activity	3.86E-02
99	GO:0008146: sulfotransferase activity	3.86E-02
100	GO:0052689: carboxylic ester hydrolase activity	4.09E-02
101	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.18E-02
102	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.18E-02
103	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.18E-02
104	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.28E-02
105	GO:0004674: protein serine/threonine kinase activity	4.42E-02
106	GO:0051536: iron-sulfur cluster binding	4.49E-02
107	GO:0031418: L-ascorbic acid binding	4.49E-02
108	GO:0016887: ATPase activity	4.59E-02
109	GO:0043424: protein histidine kinase binding	4.82E-02
110	GO:0042803: protein homodimerization activity	4.90E-02
111	GO:0004871: signal transducer activity	4.90E-02
112	GO:0008017: microtubule binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0035452: extrinsic component of plastid membrane	0.00E+00
5	GO:0000408: EKC/KEOPS complex	0.00E+00
6	GO:0009507: chloroplast	1.73E-05
7	GO:0000791: euchromatin	7.84E-04
8	GO:0009986: cell surface	9.97E-04
9	GO:0030870: Mre11 complex	1.70E-03
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.70E-03
11	GO:0009513: etioplast	1.70E-03
12	GO:0009569: chloroplast starch grain	1.70E-03
13	GO:0009509: chromoplast	2.81E-03
14	GO:0030139: endocytic vesicle	2.81E-03
15	GO:0032585: multivesicular body membrane	4.09E-03
16	GO:0032432: actin filament bundle	4.09E-03
17	GO:0009941: chloroplast envelope	5.26E-03
18	GO:0009526: plastid envelope	5.53E-03
19	GO:0005886: plasma membrane	7.02E-03
20	GO:0055035: plastid thylakoid membrane	7.11E-03
21	GO:0000795: synaptonemal complex	7.11E-03
22	GO:0015629: actin cytoskeleton	8.76E-03
23	GO:0005871: kinesin complex	1.04E-02
24	GO:0042807: central vacuole	1.27E-02
25	GO:0009501: amyloplast	1.48E-02
26	GO:0000326: protein storage vacuole	1.71E-02
27	GO:0000783: nuclear telomere cap complex	1.71E-02
28	GO:0010494: cytoplasmic stress granule	1.94E-02
29	GO:0046658: anchored component of plasma membrane	2.05E-02
30	GO:0016459: myosin complex	2.44E-02
31	GO:0005884: actin filament	2.71E-02
32	GO:0009707: chloroplast outer membrane	2.85E-02
33	GO:0009574: preprophase band	3.27E-02
34	GO:0005578: proteinaceous extracellular matrix	3.27E-02
35	GO:0009508: plastid chromosome	3.27E-02
36	GO:0005874: microtubule	3.37E-02
37	GO:0030095: chloroplast photosystem II	3.56E-02
38	GO:0000419: DNA-directed RNA polymerase V complex	4.18E-02
39	GO:0009654: photosystem II oxygen evolving complex	4.82E-02