co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042352: GDP-L-fucose salvage	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0070178: D-serine metabolic process	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
11	GO:0009069: serine family amino acid metabolic process	0.00E+00
12	GO:0005983: starch catabolic process	2.25E-08
13	GO:0018026: peptidyl-lysine monomethylation	5.13E-06
14	GO:0015995: chlorophyll biosynthetic process	6.82E-06
15	GO:2000012: regulation of auxin polar transport	7.09E-05
16	GO:0010020: chloroplast fission	8.58E-05
17	GO:0009658: chloroplast organization	1.58E-04
18	GO:0042793: transcription from plastid promoter	1.62E-04
19	GO:0042372: phylloquinone biosynthetic process	2.20E-04
20	GO:0009640: photomorphogenesis	2.99E-04
21	GO:0006633: fatty acid biosynthetic process	3.11E-04
22	GO:0015904: tetracycline transport	3.37E-04
23	GO:0005991: trehalose metabolic process	3.37E-04
24	GO:0000023: maltose metabolic process	3.37E-04
25	GO:0000025: maltose catabolic process	3.37E-04
26	GO:0005980: glycogen catabolic process	3.37E-04
27	GO:0030198: extracellular matrix organization	3.37E-04
28	GO:0046520: sphingoid biosynthetic process	3.37E-04
29	GO:0010480: microsporocyte differentiation	3.37E-04
30	GO:0042759: long-chain fatty acid biosynthetic process	3.37E-04
31	GO:0042371: vitamin K biosynthetic process	3.37E-04
32	GO:0043686: co-translational protein modification	3.37E-04
33	GO:0043007: maintenance of rDNA	3.37E-04
34	GO:0006508: proteolysis	5.73E-04
35	GO:0009793: embryo development ending in seed dormancy	7.06E-04
36	GO:0006568: tryptophan metabolic process	7.34E-04
37	GO:2000123: positive regulation of stomatal complex development	7.34E-04
38	GO:0009629: response to gravity	7.34E-04
39	GO:0019388: galactose catabolic process	7.34E-04
40	GO:0006423: cysteinyl-tRNA aminoacylation	7.34E-04
41	GO:0007154: cell communication	7.34E-04
42	GO:0071497: cellular response to freezing	7.34E-04
43	GO:0031648: protein destabilization	7.34E-04
44	GO:0010027: thylakoid membrane organization	7.75E-04
45	GO:0006006: glucose metabolic process	1.08E-03
46	GO:0009734: auxin-activated signaling pathway	1.15E-03
47	GO:2001295: malonyl-CoA biosynthetic process	1.19E-03
48	GO:0009790: embryo development	1.46E-03
49	GO:0009102: biotin biosynthetic process	1.71E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.71E-03
51	GO:0009647: skotomorphogenesis	1.71E-03
52	GO:0010731: protein glutathionylation	1.71E-03
53	GO:0046739: transport of virus in multicellular host	1.71E-03
54	GO:0009590: detection of gravity	1.71E-03
55	GO:0043572: plastid fission	1.71E-03
56	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.71E-03
57	GO:0006631: fatty acid metabolic process	1.81E-03
58	GO:0016042: lipid catabolic process	2.24E-03
59	GO:0022622: root system development	2.30E-03
60	GO:0006221: pyrimidine nucleotide biosynthetic process	2.30E-03
61	GO:2000038: regulation of stomatal complex development	2.30E-03
62	GO:0006808: regulation of nitrogen utilization	2.30E-03
63	GO:1901141: regulation of lignin biosynthetic process	2.30E-03
64	GO:0010375: stomatal complex patterning	2.93E-03
65	GO:0010236: plastoquinone biosynthetic process	2.93E-03
66	GO:0031365: N-terminal protein amino acid modification	2.93E-03
67	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.63E-03
68	GO:0009959: negative gravitropism	3.63E-03
69	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.63E-03
70	GO:0033365: protein localization to organelle	3.63E-03
71	GO:0006563: L-serine metabolic process	3.63E-03
72	GO:0010405: arabinogalactan protein metabolic process	3.63E-03
73	GO:0019252: starch biosynthetic process	3.85E-03
74	GO:0042026: protein refolding	4.37E-03
75	GO:2000033: regulation of seed dormancy process	4.37E-03
76	GO:0006458: 'de novo' protein folding	4.37E-03
77	GO:0030488: tRNA methylation	4.37E-03
78	GO:0010583: response to cyclopentenone	4.40E-03
79	GO:0009772: photosynthetic electron transport in photosystem II	5.15E-03
80	GO:0048437: floral organ development	5.15E-03
81	GO:0010098: suspensor development	5.15E-03
82	GO:0010444: guard mother cell differentiation	5.15E-03
83	GO:0030307: positive regulation of cell growth	5.15E-03
84	GO:0032880: regulation of protein localization	5.15E-03
85	GO:0010161: red light signaling pathway	5.15E-03
86	GO:0005978: glycogen biosynthetic process	5.99E-03
87	GO:0009642: response to light intensity	5.99E-03
88	GO:0006353: DNA-templated transcription, termination	5.99E-03
89	GO:0070413: trehalose metabolism in response to stress	5.99E-03
90	GO:0000105: histidine biosynthetic process	5.99E-03
91	GO:0009231: riboflavin biosynthetic process	5.99E-03
92	GO:0010099: regulation of photomorphogenesis	6.87E-03
93	GO:0010497: plasmodesmata-mediated intercellular transport	6.87E-03
94	GO:0009657: plastid organization	6.87E-03
95	GO:0010100: negative regulation of photomorphogenesis	6.87E-03
96	GO:0006526: arginine biosynthetic process	6.87E-03
97	GO:0032544: plastid translation	6.87E-03
98	GO:0009817: defense response to fungus, incompatible interaction	7.79E-03
99	GO:0051865: protein autoubiquitination	7.79E-03
100	GO:0010206: photosystem II repair	7.79E-03
101	GO:0048507: meristem development	7.79E-03
102	GO:0046916: cellular transition metal ion homeostasis	7.79E-03
103	GO:0006783: heme biosynthetic process	7.79E-03
104	GO:0000902: cell morphogenesis	7.79E-03
105	GO:0000160: phosphorelay signal transduction system	8.19E-03
106	GO:0009813: flavonoid biosynthetic process	8.19E-03
107	GO:0040008: regulation of growth	8.70E-03
108	GO:0043067: regulation of programmed cell death	8.75E-03
109	GO:0006779: porphyrin-containing compound biosynthetic process	8.75E-03
110	GO:1900865: chloroplast RNA modification	8.75E-03
111	GO:0005982: starch metabolic process	8.75E-03
112	GO:0009733: response to auxin	9.13E-03
113	GO:0006949: syncytium formation	9.76E-03
114	GO:0006782: protoporphyrinogen IX biosynthetic process	9.76E-03
115	GO:0048829: root cap development	9.76E-03
116	GO:0045036: protein targeting to chloroplast	9.76E-03
117	GO:0009073: aromatic amino acid family biosynthetic process	1.08E-02
118	GO:0048229: gametophyte development	1.08E-02
119	GO:0030001: metal ion transport	1.13E-02
120	GO:0012501: programmed cell death	1.19E-02
121	GO:0010588: cotyledon vascular tissue pattern formation	1.30E-02
122	GO:0010102: lateral root morphogenesis	1.30E-02
123	GO:0010628: positive regulation of gene expression	1.30E-02
124	GO:0050826: response to freezing	1.30E-02
125	GO:0010075: regulation of meristem growth	1.30E-02
126	GO:0009934: regulation of meristem structural organization	1.42E-02
127	GO:0009266: response to temperature stimulus	1.42E-02
128	GO:0080188: RNA-directed DNA methylation	1.54E-02
129	GO:0090351: seedling development	1.54E-02
130	GO:0005975: carbohydrate metabolic process	1.63E-02
131	GO:0000162: tryptophan biosynthetic process	1.66E-02
132	GO:0010025: wax biosynthetic process	1.66E-02
133	GO:0009736: cytokinin-activated signaling pathway	1.73E-02
134	GO:0010187: negative regulation of seed germination	1.79E-02
135	GO:0005992: trehalose biosynthetic process	1.79E-02
136	GO:0019953: sexual reproduction	1.92E-02
137	GO:0048511: rhythmic process	2.05E-02
138	GO:0061077: chaperone-mediated protein folding	2.05E-02
139	GO:0048278: vesicle docking	2.05E-02
140	GO:0003333: amino acid transmembrane transport	2.05E-02
141	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.19E-02
142	GO:0006730: one-carbon metabolic process	2.19E-02
143	GO:0009740: gibberellic acid mediated signaling pathway	2.32E-02
144	GO:0009686: gibberellin biosynthetic process	2.33E-02
145	GO:0009624: response to nematode	2.46E-02
146	GO:0015979: photosynthesis	2.50E-02
147	GO:0030154: cell differentiation	2.52E-02
148	GO:0009742: brassinosteroid mediated signaling pathway	2.61E-02
149	GO:0008284: positive regulation of cell proliferation	2.62E-02
150	GO:0048653: anther development	2.77E-02
151	GO:0009741: response to brassinosteroid	2.92E-02
152	GO:0009960: endosperm development	2.92E-02
153	GO:0009958: positive gravitropism	2.92E-02
154	GO:0006520: cellular amino acid metabolic process	2.92E-02
155	GO:0010305: leaf vascular tissue pattern formation	2.92E-02
156	GO:0006662: glycerol ether metabolic process	2.92E-02
157	GO:0010197: polar nucleus fusion	2.92E-02
158	GO:0010182: sugar mediated signaling pathway	2.92E-02
159	GO:0048544: recognition of pollen	3.07E-02
160	GO:0061025: membrane fusion	3.07E-02
161	GO:0042752: regulation of circadian rhythm	3.07E-02
162	GO:0006457: protein folding	3.20E-02
163	GO:0009058: biosynthetic process	3.25E-02
164	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.39E-02
165	GO:0071554: cell wall organization or biogenesis	3.39E-02
166	GO:0030163: protein catabolic process	3.72E-02
167	GO:1901657: glycosyl compound metabolic process	3.72E-02
168	GO:0009567: double fertilization forming a zygote and endosperm	3.88E-02
169	GO:0009828: plant-type cell wall loosening	3.88E-02
170	GO:0007267: cell-cell signaling	4.05E-02
171	GO:0009451: RNA modification	4.34E-02
172	GO:0010029: regulation of seed germination	4.58E-02
173	GO:0006906: vesicle fusion	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0010303: limit dextrinase activity	0.00E+00
7	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
8	GO:0050201: fucokinase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
11	GO:0030378: serine racemase activity	0.00E+00
12	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
13	GO:0051060: pullulanase activity	0.00E+00
14	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
15	GO:0047661: amino-acid racemase activity	0.00E+00
16	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
17	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
18	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
19	GO:0097100: supercoiled DNA binding	0.00E+00
20	GO:0016630: protochlorophyllide reductase activity	5.13E-06
21	GO:0005504: fatty acid binding	1.82E-05
22	GO:0008237: metallopeptidase activity	6.36E-05
23	GO:0045430: chalcone isomerase activity	7.15E-05
24	GO:0016279: protein-lysine N-methyltransferase activity	7.15E-05
25	GO:0003989: acetyl-CoA carboxylase activity	1.12E-04
26	GO:2001070: starch binding	1.62E-04
27	GO:0004176: ATP-dependent peptidase activity	1.86E-04
28	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.37E-04
29	GO:0000170: sphingosine hydroxylase activity	3.37E-04
30	GO:0050139: nicotinate-N-glucosyltransferase activity	3.37E-04
31	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.37E-04
32	GO:0008184: glycogen phosphorylase activity	3.37E-04
33	GO:0050308: sugar-phosphatase activity	3.37E-04
34	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	3.37E-04
35	GO:0004134: 4-alpha-glucanotransferase activity	3.37E-04
36	GO:0004645: phosphorylase activity	3.37E-04
37	GO:0009374: biotin binding	3.37E-04
38	GO:0042586: peptide deformylase activity	3.37E-04
39	GO:0010313: phytochrome binding	3.37E-04
40	GO:0019203: carbohydrate phosphatase activity	3.37E-04
41	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.37E-04
42	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.37E-04
43	GO:0004817: cysteine-tRNA ligase activity	7.34E-04
44	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.34E-04
45	GO:0042284: sphingolipid delta-4 desaturase activity	7.34E-04
46	GO:0008493: tetracycline transporter activity	7.34E-04
47	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	7.34E-04
48	GO:0004614: phosphoglucomutase activity	7.34E-04
49	GO:0019200: carbohydrate kinase activity	7.34E-04
50	GO:0004180: carboxypeptidase activity	1.19E-03
51	GO:0070330: aromatase activity	1.19E-03
52	GO:0017150: tRNA dihydrouridine synthase activity	1.19E-03
53	GO:0004075: biotin carboxylase activity	1.19E-03
54	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.19E-03
55	GO:0016805: dipeptidase activity	1.19E-03
56	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.19E-03
57	GO:0004222: metalloendopeptidase activity	1.22E-03
58	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.71E-03
59	GO:0009041: uridylate kinase activity	1.71E-03
60	GO:0016851: magnesium chelatase activity	1.71E-03
61	GO:0043023: ribosomal large subunit binding	1.71E-03
62	GO:0043621: protein self-association	2.22E-03
63	GO:0004335: galactokinase activity	2.30E-03
64	GO:0004659: prenyltransferase activity	2.30E-03
65	GO:0003959: NADPH dehydrogenase activity	2.93E-03
66	GO:0018685: alkane 1-monooxygenase activity	2.93E-03
67	GO:0001085: RNA polymerase II transcription factor binding	3.34E-03
68	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.63E-03
69	GO:0004556: alpha-amylase activity	3.63E-03
70	GO:0016208: AMP binding	3.63E-03
71	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.37E-03
72	GO:0000156: phosphorelay response regulator activity	4.69E-03
73	GO:0052689: carboxylic ester hydrolase activity	5.96E-03
74	GO:0046914: transition metal ion binding	6.87E-03
75	GO:0008173: RNA methyltransferase activity	6.87E-03
76	GO:0030170: pyridoxal phosphate binding	6.99E-03
77	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.79E-03
78	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.79E-03
79	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	9.01E-03
80	GO:0044183: protein binding involved in protein folding	1.08E-02
81	GO:0047372: acylglycerol lipase activity	1.08E-02
82	GO:0015266: protein channel activity	1.30E-02
83	GO:0004089: carbonate dehydratase activity	1.30E-02
84	GO:0008083: growth factor activity	1.42E-02
85	GO:0008266: poly(U) RNA binding	1.42E-02
86	GO:0008168: methyltransferase activity	1.54E-02
87	GO:0008146: sulfotransferase activity	1.54E-02
88	GO:0004190: aspartic-type endopeptidase activity	1.54E-02
89	GO:0000287: magnesium ion binding	1.57E-02
90	GO:0016788: hydrolase activity, acting on ester bonds	1.65E-02
91	GO:0016298: lipase activity	1.79E-02
92	GO:0033612: receptor serine/threonine kinase binding	2.05E-02
93	GO:0003727: single-stranded RNA binding	2.47E-02
94	GO:0003824: catalytic activity	2.55E-02
95	GO:0047134: protein-disulfide reductase activity	2.62E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	3.07E-02
97	GO:0019901: protein kinase binding	3.23E-02
98	GO:0003924: GTPase activity	3.44E-02
99	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.51E-02
100	GO:0005507: copper ion binding	3.68E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.72E-02
102	GO:0004519: endonuclease activity	3.81E-02
103	GO:0016791: phosphatase activity	3.88E-02
104	GO:0008483: transaminase activity	4.05E-02
105	GO:0016413: O-acetyltransferase activity	4.23E-02
106	GO:0016597: amino acid binding	4.23E-02
107	GO:0005525: GTP binding	4.53E-02
108	GO:0102483: scopolin beta-glucosidase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.28E-17
2	GO:0009570: chloroplast stroma	6.42E-16
3	GO:0009941: chloroplast envelope	1.96E-10
4	GO:0009534: chloroplast thylakoid	7.67E-07
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.13E-06
6	GO:0009536: plastid	9.91E-05
7	GO:0009706: chloroplast inner membrane	1.27E-04
8	GO:0009295: nucleoid	6.69E-04
9	GO:0031357: integral component of chloroplast inner membrane	7.34E-04
10	GO:0009508: plastid chromosome	1.08E-03
11	GO:0031969: chloroplast membrane	1.18E-03
12	GO:0019897: extrinsic component of plasma membrane	1.19E-03
13	GO:0010007: magnesium chelatase complex	1.19E-03
14	GO:0009317: acetyl-CoA carboxylase complex	1.19E-03
15	GO:0042646: plastid nucleoid	1.71E-03
16	GO:0005655: nucleolar ribonuclease P complex	4.37E-03
17	GO:0010319: stromule	5.31E-03
18	GO:0009501: amyloplast	5.99E-03
19	GO:0005667: transcription factor complex	6.66E-03
20	GO:0042644: chloroplast nucleoid	7.79E-03
21	GO:0090404: pollen tube tip	1.08E-02
22	GO:0046658: anchored component of plasma membrane	1.32E-02
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.47E-02
24	GO:0009579: thylakoid	2.85E-02
25	GO:0009535: chloroplast thylakoid membrane	3.38E-02
26	GO:0043231: intracellular membrane-bounded organelle	3.88E-02
27	GO:0005778: peroxisomal membrane	4.05E-02
28	GO:0030529: intracellular ribonucleoprotein complex	4.40E-02
29	GO:0005615: extracellular space	4.74E-02