co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007172: signal complex assembly	0.00E+00
2	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0009583: detection of light stimulus	0.00E+00
8	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
9	GO:1900871: chloroplast mRNA modification	2.37E-07
10	GO:2001141: regulation of RNA biosynthetic process	2.19E-06
11	GO:0071482: cellular response to light stimulus	3.64E-05
12	GO:0031426: polycistronic mRNA processing	6.42E-05
13	GO:0043266: regulation of potassium ion transport	6.42E-05
14	GO:0072387: flavin adenine dinucleotide metabolic process	6.42E-05
15	GO:2000021: regulation of ion homeostasis	6.42E-05
16	GO:0006419: alanyl-tRNA aminoacylation	6.42E-05
17	GO:0006352: DNA-templated transcription, initiation	7.90E-05
18	GO:0009658: chloroplast organization	9.51E-05
19	GO:0010617: circadian regulation of calcium ion oscillation	1.55E-04
20	GO:0006432: phenylalanyl-tRNA aminoacylation	1.55E-04
21	GO:0099402: plant organ development	1.55E-04
22	GO:0006420: arginyl-tRNA aminoacylation	1.55E-04
23	GO:0010343: singlet oxygen-mediated programmed cell death	1.55E-04
24	GO:1901529: positive regulation of anion channel activity	1.55E-04
25	GO:0060359: response to ammonium ion	1.55E-04
26	GO:1901672: positive regulation of systemic acquired resistance	2.63E-04
27	GO:0006696: ergosterol biosynthetic process	2.63E-04
28	GO:0043157: response to cation stress	2.63E-04
29	GO:0005977: glycogen metabolic process	2.63E-04
30	GO:1902448: positive regulation of shade avoidance	2.63E-04
31	GO:0009793: embryo development ending in seed dormancy	3.70E-04
32	GO:0033014: tetrapyrrole biosynthetic process	3.82E-04
33	GO:1901332: negative regulation of lateral root development	3.82E-04
34	GO:0010239: chloroplast mRNA processing	3.82E-04
35	GO:1902347: response to strigolactone	5.10E-04
36	GO:0010021: amylopectin biosynthetic process	5.10E-04
37	GO:0006661: phosphatidylinositol biosynthetic process	5.10E-04
38	GO:0010117: photoprotection	6.45E-04
39	GO:0046283: anthocyanin-containing compound metabolic process	6.45E-04
40	GO:0009416: response to light stimulus	6.57E-04
41	GO:1901371: regulation of leaf morphogenesis	7.90E-04
42	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	7.90E-04
43	GO:0060918: auxin transport	7.90E-04
44	GO:0009959: negative gravitropism	7.90E-04
45	GO:0010310: regulation of hydrogen peroxide metabolic process	9.40E-04
46	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.40E-04
47	GO:0009637: response to blue light	1.02E-03
48	GO:0006400: tRNA modification	1.10E-03
49	GO:0051510: regulation of unidimensional cell growth	1.10E-03
50	GO:0009395: phospholipid catabolic process	1.10E-03
51	GO:0042255: ribosome assembly	1.26E-03
52	GO:0006353: DNA-templated transcription, termination	1.26E-03
53	GO:0070413: trehalose metabolism in response to stress	1.26E-03
54	GO:0048564: photosystem I assembly	1.26E-03
55	GO:0010114: response to red light	1.30E-03
56	GO:0032544: plastid translation	1.44E-03
57	GO:0048507: meristem development	1.62E-03
58	GO:0006783: heme biosynthetic process	1.62E-03
59	GO:0000373: Group II intron splicing	1.62E-03
60	GO:1900426: positive regulation of defense response to bacterium	1.81E-03
61	GO:0009638: phototropism	1.81E-03
62	GO:0006779: porphyrin-containing compound biosynthetic process	1.81E-03
63	GO:1900865: chloroplast RNA modification	1.81E-03
64	GO:0009299: mRNA transcription	2.01E-03
65	GO:0006949: syncytium formation	2.01E-03
66	GO:0045037: protein import into chloroplast stroma	2.42E-03
67	GO:0009785: blue light signaling pathway	2.64E-03
68	GO:0010075: regulation of meristem growth	2.64E-03
69	GO:0009725: response to hormone	2.64E-03
70	GO:0010207: photosystem II assembly	2.87E-03
71	GO:0009934: regulation of meristem structural organization	2.87E-03
72	GO:0007010: cytoskeleton organization	3.57E-03
73	GO:2000377: regulation of reactive oxygen species metabolic process	3.57E-03
74	GO:0005992: trehalose biosynthetic process	3.57E-03
75	GO:0009451: RNA modification	4.30E-03
76	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.60E-03
77	GO:0016117: carotenoid biosynthetic process	5.15E-03
78	GO:0008033: tRNA processing	5.43E-03
79	GO:0010118: stomatal movement	5.43E-03
80	GO:0042752: regulation of circadian rhythm	6.01E-03
81	GO:0009646: response to absence of light	6.01E-03
82	GO:0009826: unidimensional cell growth	6.24E-03
83	GO:0019252: starch biosynthetic process	6.31E-03
84	GO:0008654: phospholipid biosynthetic process	6.31E-03
85	GO:0009791: post-embryonic development	6.31E-03
86	GO:0032502: developmental process	6.92E-03
87	GO:0009630: gravitropism	6.92E-03
88	GO:0006464: cellular protein modification process	7.55E-03
89	GO:0009828: plant-type cell wall loosening	7.55E-03
90	GO:0010027: thylakoid membrane organization	8.54E-03
91	GO:0018298: protein-chromophore linkage	1.03E-02
92	GO:0010218: response to far red light	1.10E-02
93	GO:0006397: mRNA processing	1.24E-02
94	GO:0009640: photomorphogenesis	1.45E-02
95	GO:0009644: response to high light intensity	1.54E-02
96	GO:0009664: plant-type cell wall organization	1.71E-02
97	GO:0042538: hyperosmotic salinity response	1.71E-02
98	GO:0051603: proteolysis involved in cellular protein catabolic process	1.84E-02
99	GO:0009740: gibberellic acid mediated signaling pathway	2.21E-02
100	GO:0009742: brassinosteroid mediated signaling pathway	2.41E-02
101	GO:0009790: embryo development	3.02E-02
102	GO:0006413: translational initiation	3.24E-02
103	GO:0040008: regulation of growth	3.30E-02
104	GO:0007623: circadian rhythm	3.41E-02
105	GO:0006508: proteolysis	3.80E-02
106	GO:0008380: RNA splicing	3.86E-02
107	GO:0010468: regulation of gene expression	3.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0001053: plastid sigma factor activity	4.21E-06
4	GO:0016987: sigma factor activity	4.21E-06
5	GO:0004325: ferrochelatase activity	6.42E-05
6	GO:0051996: squalene synthase activity	6.42E-05
7	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.42E-05
8	GO:0016776: phosphotransferase activity, phosphate group as acceptor	6.42E-05
9	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	6.42E-05
10	GO:0004813: alanine-tRNA ligase activity	6.42E-05
11	GO:0000049: tRNA binding	9.25E-05
12	GO:0004826: phenylalanine-tRNA ligase activity	1.55E-04
13	GO:0019156: isoamylase activity	1.55E-04
14	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.55E-04
15	GO:0017118: lipoyltransferase activity	1.55E-04
16	GO:0043425: bHLH transcription factor binding	1.55E-04
17	GO:0004814: arginine-tRNA ligase activity	1.55E-04
18	GO:0008805: carbon-monoxide oxygenase activity	1.55E-04
19	GO:0004148: dihydrolipoyl dehydrogenase activity	2.63E-04
20	GO:0003723: RNA binding	3.42E-04
21	GO:0009882: blue light photoreceptor activity	3.82E-04
22	GO:0048027: mRNA 5'-UTR binding	3.82E-04
23	GO:0004556: alpha-amylase activity	7.90E-04
24	GO:0004462: lactoylglutathione lyase activity	7.90E-04
25	GO:0004222: metalloendopeptidase activity	8.94E-04
26	GO:0004656: procollagen-proline 4-dioxygenase activity	9.40E-04
27	GO:0071949: FAD binding	1.62E-03
28	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.73E-03
29	GO:0004805: trehalose-phosphatase activity	2.01E-03
30	GO:0031072: heat shock protein binding	2.64E-03
31	GO:0009982: pseudouridine synthase activity	2.64E-03
32	GO:0031418: L-ascorbic acid binding	3.57E-03
33	GO:0033612: receptor serine/threonine kinase binding	4.08E-03
34	GO:0003756: protein disulfide isomerase activity	4.87E-03
35	GO:0003727: single-stranded RNA binding	4.87E-03
36	GO:0008536: Ran GTPase binding	5.72E-03
37	GO:0016791: phosphatase activity	7.55E-03
38	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	7.88E-03
39	GO:0016597: amino acid binding	8.21E-03
40	GO:0004721: phosphoprotein phosphatase activity	9.57E-03
41	GO:0050897: cobalt ion binding	1.14E-02
42	GO:0003993: acid phosphatase activity	1.25E-02
43	GO:0004519: endonuclease activity	1.29E-02
44	GO:0004185: serine-type carboxypeptidase activity	1.45E-02
45	GO:0043621: protein self-association	1.54E-02
46	GO:0003690: double-stranded DNA binding	1.84E-02
47	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.07E-02
48	GO:0051082: unfolded protein binding	2.31E-02
49	GO:0019843: rRNA binding	2.71E-02
50	GO:0008565: protein transporter activity	3.08E-02
51	GO:0008017: microtubule binding	3.52E-02
52	GO:0003743: translation initiation factor activity	3.80E-02
53	GO:0042802: identical protein binding	4.04E-02
54	GO:0008168: methyltransferase activity	4.52E-02
55	GO:0016788: hydrolase activity, acting on ester bonds	4.71E-02
56	GO:0003682: chromatin binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	3.06E-12
3	GO:0009570: chloroplast stroma	2.16E-04
4	GO:0016605: PML body	2.63E-04
5	GO:0030663: COPI-coated vesicle membrane	5.10E-04
6	GO:0055035: plastid thylakoid membrane	6.45E-04
7	GO:0031969: chloroplast membrane	1.13E-03
8	GO:0009501: amyloplast	1.26E-03
9	GO:0009535: chloroplast thylakoid membrane	1.52E-03
10	GO:0042644: chloroplast nucleoid	1.62E-03
11	GO:0016604: nuclear body	1.81E-03
12	GO:0030125: clathrin vesicle coat	2.01E-03
13	GO:0009706: chloroplast inner membrane	2.45E-03
14	GO:0009536: plastid	2.58E-03
15	GO:0009508: plastid chromosome	2.64E-03
16	GO:0042651: thylakoid membrane	3.82E-03
17	GO:0005759: mitochondrial matrix	3.82E-03
18	GO:0009532: plastid stroma	4.08E-03
19	GO:0009941: chloroplast envelope	5.59E-03
20	GO:0009295: nucleoid	7.88E-03
21	GO:0030529: intracellular ribonucleoprotein complex	8.54E-03
22	GO:0000325: plant-type vacuole	1.14E-02
23	GO:0005856: cytoskeleton	1.58E-02
24	GO:0005747: mitochondrial respiratory chain complex I	2.07E-02
25	GO:0010287: plastoglobule	2.61E-02
26	GO:0005623: cell	2.76E-02
27	GO:0009705: plant-type vacuole membrane	3.41E-02
28	GO:0005768: endosome	3.85E-02