co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006907: pinocytosis	0.00E+00
2	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
5	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
8	GO:0046486: glycerolipid metabolic process	0.00E+00
9	GO:0009686: gibberellin biosynthetic process	2.40E-05
10	GO:0010583: response to cyclopentenone	7.81E-05
11	GO:0009734: auxin-activated signaling pathway	1.41E-04
12	GO:0051013: microtubule severing	4.13E-04
13	GO:0034757: negative regulation of iron ion transport	4.13E-04
14	GO:0045786: negative regulation of cell cycle	4.13E-04
15	GO:0010726: positive regulation of hydrogen peroxide metabolic process	4.13E-04
16	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	4.13E-04
17	GO:0010070: zygote asymmetric cell division	4.13E-04
18	GO:0009926: auxin polar transport	4.84E-04
19	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.24E-04
20	GO:0007186: G-protein coupled receptor signaling pathway	5.92E-04
21	GO:0009733: response to auxin	6.73E-04
22	GO:0000373: Group II intron splicing	7.09E-04
23	GO:0043039: tRNA aminoacylation	8.93E-04
24	GO:0010069: zygote asymmetric cytokinesis in embryo sac	8.93E-04
25	GO:0006650: glycerophospholipid metabolic process	8.93E-04
26	GO:0061062: regulation of nematode larval development	8.93E-04
27	GO:0010271: regulation of chlorophyll catabolic process	8.93E-04
28	GO:0001736: establishment of planar polarity	8.93E-04
29	GO:0048575: short-day photoperiodism, flowering	1.45E-03
30	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.45E-03
31	GO:0090506: axillary shoot meristem initiation	1.45E-03
32	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.45E-03
33	GO:0046168: glycerol-3-phosphate catabolic process	1.45E-03
34	GO:0080117: secondary growth	1.45E-03
35	GO:0006518: peptide metabolic process	1.45E-03
36	GO:0042780: tRNA 3'-end processing	1.45E-03
37	GO:0009887: animal organ morphogenesis	1.64E-03
38	GO:0009825: multidimensional cell growth	1.83E-03
39	GO:0006468: protein phosphorylation	2.00E-03
40	GO:0006863: purine nucleobase transport	2.05E-03
41	GO:0045017: glycerolipid biosynthetic process	2.10E-03
42	GO:0007276: gamete generation	2.10E-03
43	GO:0006072: glycerol-3-phosphate metabolic process	2.10E-03
44	GO:0033014: tetrapyrrole biosynthetic process	2.10E-03
45	GO:0009956: radial pattern formation	2.82E-03
46	GO:0048629: trichome patterning	2.82E-03
47	GO:0042991: transcription factor import into nucleus	2.82E-03
48	GO:0006021: inositol biosynthetic process	2.82E-03
49	GO:0009416: response to light stimulus	3.32E-03
50	GO:0042127: regulation of cell proliferation	3.58E-03
51	GO:0009107: lipoate biosynthetic process	3.61E-03
52	GO:0009696: salicylic acid metabolic process	3.61E-03
53	GO:0045487: gibberellin catabolic process	3.61E-03
54	GO:0009736: cytokinin-activated signaling pathway	4.32E-03
55	GO:0010942: positive regulation of cell death	4.47E-03
56	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	4.47E-03
57	GO:0016554: cytidine to uridine editing	4.47E-03
58	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.47E-03
59	GO:0048831: regulation of shoot system development	4.47E-03
60	GO:0003006: developmental process involved in reproduction	4.47E-03
61	GO:0009958: positive gravitropism	4.52E-03
62	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.38E-03
63	GO:0009942: longitudinal axis specification	5.38E-03
64	GO:0048509: regulation of meristem development	5.38E-03
65	GO:0071554: cell wall organization or biogenesis	5.58E-03
66	GO:0009740: gibberellic acid mediated signaling pathway	6.27E-03
67	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.36E-03
68	GO:0009610: response to symbiotic fungus	6.36E-03
69	GO:0007050: cell cycle arrest	6.36E-03
70	GO:0000082: G1/S transition of mitotic cell cycle	6.36E-03
71	GO:0010444: guard mother cell differentiation	6.36E-03
72	GO:0009624: response to nematode	6.77E-03
73	GO:0010492: maintenance of shoot apical meristem identity	7.40E-03
74	GO:0000105: histidine biosynthetic process	7.40E-03
75	GO:0009231: riboflavin biosynthetic process	7.40E-03
76	GO:0048564: photosystem I assembly	7.40E-03
77	GO:0045292: mRNA cis splicing, via spliceosome	7.40E-03
78	GO:0042255: ribosome assembly	7.40E-03
79	GO:0046620: regulation of organ growth	7.40E-03
80	GO:0006353: DNA-templated transcription, termination	7.40E-03
81	GO:0006402: mRNA catabolic process	7.40E-03
82	GO:0032544: plastid translation	8.49E-03
83	GO:0007389: pattern specification process	8.49E-03
84	GO:0016567: protein ubiquitination	8.64E-03
85	GO:0009627: systemic acquired resistance	9.04E-03
86	GO:0015995: chlorophyll biosynthetic process	9.54E-03
87	GO:0048573: photoperiodism, flowering	9.54E-03
88	GO:0009056: catabolic process	9.65E-03
89	GO:0048507: meristem development	9.65E-03
90	GO:0006783: heme biosynthetic process	9.65E-03
91	GO:0048589: developmental growth	9.65E-03
92	GO:1900865: chloroplast RNA modification	1.09E-02
93	GO:0000160: phosphorelay signal transduction system	1.11E-02
94	GO:0009832: plant-type cell wall biogenesis	1.11E-02
95	GO:0006811: ion transport	1.17E-02
96	GO:0048829: root cap development	1.21E-02
97	GO:0009641: shade avoidance	1.21E-02
98	GO:0010192: mucilage biosynthetic process	1.21E-02
99	GO:0010629: negative regulation of gene expression	1.21E-02
100	GO:0006782: protoporphyrinogen IX biosynthetic process	1.21E-02
101	GO:0051301: cell division	1.27E-02
102	GO:0048765: root hair cell differentiation	1.34E-02
103	GO:0008285: negative regulation of cell proliferation	1.34E-02
104	GO:0009750: response to fructose	1.34E-02
105	GO:0016485: protein processing	1.34E-02
106	GO:0006790: sulfur compound metabolic process	1.48E-02
107	GO:0005983: starch catabolic process	1.48E-02
108	GO:0045037: protein import into chloroplast stroma	1.48E-02
109	GO:0010582: floral meristem determinacy	1.48E-02
110	GO:0010152: pollen maturation	1.48E-02
111	GO:0048364: root development	1.56E-02
112	GO:0009739: response to gibberellin	1.57E-02
113	GO:2000028: regulation of photoperiodism, flowering	1.62E-02
114	GO:0009767: photosynthetic electron transport chain	1.62E-02
115	GO:0010102: lateral root morphogenesis	1.62E-02
116	GO:0009744: response to sucrose	1.74E-02
117	GO:0010540: basipetal auxin transport	1.76E-02
118	GO:0006302: double-strand break repair	1.76E-02
119	GO:0048768: root hair cell tip growth	1.76E-02
120	GO:0048467: gynoecium development	1.76E-02
121	GO:0009933: meristem structural organization	1.76E-02
122	GO:0010207: photosystem II assembly	1.76E-02
123	GO:0010223: secondary shoot formation	1.76E-02
124	GO:0042546: cell wall biogenesis	1.81E-02
125	GO:0046854: phosphatidylinositol phosphorylation	1.91E-02
126	GO:0080188: RNA-directed DNA methylation	1.91E-02
127	GO:0009833: plant-type primary cell wall biogenesis	2.06E-02
128	GO:0006364: rRNA processing	2.34E-02
129	GO:0009658: chloroplast organization	2.37E-02
130	GO:0006418: tRNA aminoacylation for protein translation	2.38E-02
131	GO:0006874: cellular calcium ion homeostasis	2.38E-02
132	GO:0043622: cortical microtubule organization	2.38E-02
133	GO:0006306: DNA methylation	2.55E-02
134	GO:0051321: meiotic cell cycle	2.55E-02
135	GO:0003333: amino acid transmembrane transport	2.55E-02
136	GO:0016226: iron-sulfur cluster assembly	2.72E-02
137	GO:0048316: seed development	2.86E-02
138	GO:0001944: vasculature development	2.89E-02
139	GO:0071215: cellular response to abscisic acid stimulus	2.89E-02
140	GO:0010082: regulation of root meristem growth	2.89E-02
141	GO:0048443: stamen development	3.07E-02
142	GO:0006284: base-excision repair	3.07E-02
143	GO:0010091: trichome branching	3.07E-02
144	GO:0070417: cellular response to cold	3.25E-02
145	GO:0006351: transcription, DNA-templated	3.36E-02
146	GO:0010087: phloem or xylem histogenesis	3.44E-02
147	GO:0000226: microtubule cytoskeleton organization	3.44E-02
148	GO:0000271: polysaccharide biosynthetic process	3.44E-02
149	GO:0051726: regulation of cell cycle	3.54E-02
150	GO:0010182: sugar mediated signaling pathway	3.63E-02
151	GO:0009741: response to brassinosteroid	3.63E-02
152	GO:0045489: pectin biosynthetic process	3.63E-02
153	GO:0010305: leaf vascular tissue pattern formation	3.63E-02
154	GO:0045892: negative regulation of transcription, DNA-templated	3.94E-02
155	GO:0009791: post-embryonic development	4.01E-02
156	GO:0048825: cotyledon development	4.01E-02
157	GO:0009749: response to glucose	4.01E-02
158	GO:0008654: phospholipid biosynthetic process	4.01E-02
159	GO:0006355: regulation of transcription, DNA-templated	4.11E-02
160	GO:0002229: defense response to oomycetes	4.21E-02
161	GO:0032502: developmental process	4.41E-02
162	GO:0031047: gene silencing by RNA	4.41E-02
163	GO:0010090: trichome morphogenesis	4.62E-02
164	GO:0009567: double fertilization forming a zygote and endosperm	4.83E-02
165	GO:0019760: glucosinolate metabolic process	4.83E-02
166	GO:0010252: auxin homeostasis	4.83E-02
167	GO:0009639: response to red or far red light	4.83E-02
168	GO:0006464: cellular protein modification process	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0010011: auxin binding	1.01E-04
7	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.13E-04
8	GO:0005227: calcium activated cation channel activity	4.13E-04
9	GO:0004831: tyrosine-tRNA ligase activity	4.13E-04
10	GO:0008568: microtubule-severing ATPase activity	4.13E-04
11	GO:0017118: lipoyltransferase activity	8.93E-04
12	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.93E-04
13	GO:0010296: prenylcysteine methylesterase activity	8.93E-04
14	GO:0016415: octanoyltransferase activity	8.93E-04
15	GO:0004047: aminomethyltransferase activity	8.93E-04
16	GO:0052832: inositol monophosphate 3-phosphatase activity	8.93E-04
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.93E-04
18	GO:0004109: coproporphyrinogen oxidase activity	8.93E-04
19	GO:0008805: carbon-monoxide oxygenase activity	8.93E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	8.93E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	8.93E-04
22	GO:0009884: cytokinin receptor activity	8.93E-04
23	GO:0019156: isoamylase activity	8.93E-04
24	GO:0017022: myosin binding	8.93E-04
25	GO:0005034: osmosensor activity	1.45E-03
26	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.45E-03
27	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.45E-03
28	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.45E-03
29	GO:0080031: methyl salicylate esterase activity	2.10E-03
30	GO:0045544: gibberellin 20-oxidase activity	2.10E-03
31	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.10E-03
32	GO:0005345: purine nucleobase transmembrane transporter activity	2.50E-03
33	GO:0010328: auxin influx transmembrane transporter activity	2.82E-03
34	GO:0043495: protein anchor	2.82E-03
35	GO:0004930: G-protein coupled receptor activity	2.82E-03
36	GO:0004871: signal transducer activity	3.02E-03
37	GO:0008725: DNA-3-methyladenine glycosylase activity	3.61E-03
38	GO:0080030: methyl indole-3-acetate esterase activity	4.47E-03
39	GO:0004709: MAP kinase kinase kinase activity	4.47E-03
40	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	4.47E-03
41	GO:0030332: cyclin binding	4.47E-03
42	GO:0004556: alpha-amylase activity	4.47E-03
43	GO:0004462: lactoylglutathione lyase activity	4.47E-03
44	GO:0019901: protein kinase binding	5.21E-03
45	GO:0019900: kinase binding	5.38E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.38E-03
47	GO:0016832: aldehyde-lyase activity	5.38E-03
48	GO:0004518: nuclease activity	5.96E-03
49	GO:0016759: cellulose synthase activity	6.77E-03
50	GO:0016301: kinase activity	6.91E-03
51	GO:0016413: O-acetyltransferase activity	7.63E-03
52	GO:0009672: auxin:proton symporter activity	1.09E-02
53	GO:0004222: metalloendopeptidase activity	1.17E-02
54	GO:0004673: protein histidine kinase activity	1.21E-02
55	GO:0004674: protein serine/threonine kinase activity	1.28E-02
56	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.47E-02
57	GO:0000155: phosphorelay sensor kinase activity	1.62E-02
58	GO:0010329: auxin efflux transmembrane transporter activity	1.62E-02
59	GO:0003725: double-stranded RNA binding	1.62E-02
60	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.84E-02
61	GO:0042802: identical protein binding	1.85E-02
62	GO:0008061: chitin binding	1.91E-02
63	GO:0005217: intracellular ligand-gated ion channel activity	1.91E-02
64	GO:0003712: transcription cofactor activity	1.91E-02
65	GO:0004970: ionotropic glutamate receptor activity	1.91E-02
66	GO:0008134: transcription factor binding	2.22E-02
67	GO:0043424: protein histidine kinase binding	2.38E-02
68	GO:0003690: double-stranded DNA binding	2.43E-02
69	GO:0008408: 3'-5' exonuclease activity	2.55E-02
70	GO:0033612: receptor serine/threonine kinase binding	2.55E-02
71	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.72E-02
72	GO:0004672: protein kinase activity	2.73E-02
73	GO:0016760: cellulose synthase (UDP-forming) activity	2.89E-02
74	GO:0030570: pectate lyase activity	2.89E-02
75	GO:0043565: sequence-specific DNA binding	3.05E-02
76	GO:0003727: single-stranded RNA binding	3.07E-02
77	GO:0004812: aminoacyl-tRNA ligase activity	3.25E-02
78	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.63E-02
79	GO:0001085: RNA polymerase II transcription factor binding	3.63E-02
80	GO:0016853: isomerase activity	3.82E-02
81	GO:0010181: FMN binding	3.82E-02
82	GO:0042803: protein homodimerization activity	4.10E-02
83	GO:0019843: rRNA binding	4.17E-02
84	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.21E-02
85	GO:0000156: phosphorelay response regulator activity	4.62E-02
86	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0000791: euchromatin	4.13E-04
4	GO:0009569: chloroplast starch grain	8.93E-04
5	GO:0030870: Mre11 complex	8.93E-04
6	GO:0009531: secondary cell wall	2.10E-03
7	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.10E-03
8	GO:0000795: synaptonemal complex	3.61E-03
9	GO:0009986: cell surface	6.36E-03
10	GO:0009507: chloroplast	8.31E-03
11	GO:0042644: chloroplast nucleoid	9.65E-03
12	GO:0005875: microtubule associated complex	2.06E-02
13	GO:0000419: DNA-directed RNA polymerase V complex	2.06E-02
14	GO:0043234: protein complex	2.06E-02
15	GO:0009570: chloroplast stroma	2.66E-02
16	GO:0016021: integral component of membrane	3.64E-02
17	GO:0009504: cell plate	4.01E-02
18	GO:0016592: mediator complex	4.41E-02
19	GO:0000785: chromatin	4.41E-02