GO Enrichment Analysis of Co-expressed Genes with
AT4G31840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 3 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 4 | GO:0017038: protein import | 0.00E+00 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 2.51E-07 |
| 6 | GO:0046739: transport of virus in multicellular host | 8.48E-06 |
| 7 | GO:0009658: chloroplast organization | 7.04E-05 |
| 8 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.20E-04 |
| 9 | GO:0000025: maltose catabolic process | 1.40E-04 |
| 10 | GO:0070509: calcium ion import | 1.40E-04 |
| 11 | GO:0010442: guard cell morphogenesis | 1.40E-04 |
| 12 | GO:0010480: microsporocyte differentiation | 1.40E-04 |
| 13 | GO:0042759: long-chain fatty acid biosynthetic process | 1.40E-04 |
| 14 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.76E-04 |
| 15 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.09E-04 |
| 16 | GO:0005983: starch catabolic process | 2.81E-04 |
| 17 | GO:0009786: regulation of asymmetric cell division | 3.20E-04 |
| 18 | GO:2000123: positive regulation of stomatal complex development | 3.20E-04 |
| 19 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.20E-04 |
| 20 | GO:0052541: plant-type cell wall cellulose metabolic process | 3.20E-04 |
| 21 | GO:0019388: galactose catabolic process | 3.20E-04 |
| 22 | GO:0018026: peptidyl-lysine monomethylation | 3.20E-04 |
| 23 | GO:0006006: glucose metabolic process | 3.21E-04 |
| 24 | GO:0006631: fatty acid metabolic process | 3.73E-04 |
| 25 | GO:0070588: calcium ion transmembrane transport | 4.07E-04 |
| 26 | GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process | 5.26E-04 |
| 27 | GO:0006696: ergosterol biosynthetic process | 5.26E-04 |
| 28 | GO:0007231: osmosensory signaling pathway | 7.53E-04 |
| 29 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.53E-04 |
| 30 | GO:0010088: phloem development | 7.53E-04 |
| 31 | GO:0009647: skotomorphogenesis | 7.53E-04 |
| 32 | GO:0009590: detection of gravity | 7.53E-04 |
| 33 | GO:0010109: regulation of photosynthesis | 9.98E-04 |
| 34 | GO:0009765: photosynthesis, light harvesting | 9.98E-04 |
| 35 | GO:0033500: carbohydrate homeostasis | 9.98E-04 |
| 36 | GO:2000038: regulation of stomatal complex development | 9.98E-04 |
| 37 | GO:0016123: xanthophyll biosynthetic process | 1.26E-03 |
| 38 | GO:0010375: stomatal complex patterning | 1.26E-03 |
| 39 | GO:0016120: carotene biosynthetic process | 1.26E-03 |
| 40 | GO:0000304: response to singlet oxygen | 1.26E-03 |
| 41 | GO:0048497: maintenance of floral organ identity | 1.26E-03 |
| 42 | GO:0010405: arabinogalactan protein metabolic process | 1.55E-03 |
| 43 | GO:0016554: cytidine to uridine editing | 1.55E-03 |
| 44 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.55E-03 |
| 45 | GO:0009913: epidermal cell differentiation | 1.55E-03 |
| 46 | GO:0042793: transcription from plastid promoter | 1.55E-03 |
| 47 | GO:0033365: protein localization to organelle | 1.55E-03 |
| 48 | GO:0010027: thylakoid membrane organization | 1.71E-03 |
| 49 | GO:0040008: regulation of growth | 1.75E-03 |
| 50 | GO:0042026: protein refolding | 1.86E-03 |
| 51 | GO:0006458: 'de novo' protein folding | 1.86E-03 |
| 52 | GO:0030488: tRNA methylation | 1.86E-03 |
| 53 | GO:0048528: post-embryonic root development | 2.18E-03 |
| 54 | GO:0048437: floral organ development | 2.18E-03 |
| 55 | GO:0010444: guard mother cell differentiation | 2.18E-03 |
| 56 | GO:0009817: defense response to fungus, incompatible interaction | 2.22E-03 |
| 57 | GO:0009813: flavonoid biosynthetic process | 2.33E-03 |
| 58 | GO:0005978: glycogen biosynthetic process | 2.52E-03 |
| 59 | GO:0006605: protein targeting | 2.52E-03 |
| 60 | GO:0006526: arginine biosynthetic process | 2.88E-03 |
| 61 | GO:0032544: plastid translation | 2.88E-03 |
| 62 | GO:0009835: fruit ripening | 3.26E-03 |
| 63 | GO:1900865: chloroplast RNA modification | 3.65E-03 |
| 64 | GO:0048829: root cap development | 4.06E-03 |
| 65 | GO:0045036: protein targeting to chloroplast | 4.06E-03 |
| 66 | GO:0009641: shade avoidance | 4.06E-03 |
| 67 | GO:0048229: gametophyte development | 4.48E-03 |
| 68 | GO:0006816: calcium ion transport | 4.48E-03 |
| 69 | GO:0009073: aromatic amino acid family biosynthetic process | 4.48E-03 |
| 70 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.48E-03 |
| 71 | GO:0015979: photosynthesis | 5.00E-03 |
| 72 | GO:0050826: response to freezing | 5.37E-03 |
| 73 | GO:0010075: regulation of meristem growth | 5.37E-03 |
| 74 | GO:0009725: response to hormone | 5.37E-03 |
| 75 | GO:2000012: regulation of auxin polar transport | 5.37E-03 |
| 76 | GO:0009934: regulation of meristem structural organization | 5.84E-03 |
| 77 | GO:0010020: chloroplast fission | 5.84E-03 |
| 78 | GO:0006071: glycerol metabolic process | 6.81E-03 |
| 79 | GO:0010025: wax biosynthetic process | 6.81E-03 |
| 80 | GO:0006629: lipid metabolic process | 6.93E-03 |
| 81 | GO:0009742: brassinosteroid mediated signaling pathway | 7.31E-03 |
| 82 | GO:0010026: trichome differentiation | 7.84E-03 |
| 83 | GO:0048511: rhythmic process | 8.38E-03 |
| 84 | GO:0061077: chaperone-mediated protein folding | 8.38E-03 |
| 85 | GO:0031408: oxylipin biosynthetic process | 8.38E-03 |
| 86 | GO:0030245: cellulose catabolic process | 8.92E-03 |
| 87 | GO:0009058: biosynthetic process | 9.11E-03 |
| 88 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 9.48E-03 |
| 89 | GO:0009693: ethylene biosynthetic process | 9.48E-03 |
| 90 | GO:0009561: megagametogenesis | 1.01E-02 |
| 91 | GO:0016117: carotenoid biosynthetic process | 1.06E-02 |
| 92 | GO:0006633: fatty acid biosynthetic process | 1.09E-02 |
| 93 | GO:0048653: anther development | 1.12E-02 |
| 94 | GO:0000413: protein peptidyl-prolyl isomerization | 1.12E-02 |
| 95 | GO:0006520: cellular amino acid metabolic process | 1.18E-02 |
| 96 | GO:0007018: microtubule-based movement | 1.25E-02 |
| 97 | GO:0042752: regulation of circadian rhythm | 1.25E-02 |
| 98 | GO:0009646: response to absence of light | 1.25E-02 |
| 99 | GO:0048544: recognition of pollen | 1.25E-02 |
| 100 | GO:0048825: cotyledon development | 1.31E-02 |
| 101 | GO:0019252: starch biosynthetic process | 1.31E-02 |
| 102 | GO:0032502: developmental process | 1.44E-02 |
| 103 | GO:0016032: viral process | 1.44E-02 |
| 104 | GO:0009409: response to cold | 1.48E-02 |
| 105 | GO:0071281: cellular response to iron ion | 1.51E-02 |
| 106 | GO:0010090: trichome morphogenesis | 1.51E-02 |
| 107 | GO:0009828: plant-type cell wall loosening | 1.58E-02 |
| 108 | GO:0007267: cell-cell signaling | 1.64E-02 |
| 109 | GO:0009627: systemic acquired resistance | 1.93E-02 |
| 110 | GO:0006457: protein folding | 1.99E-02 |
| 111 | GO:0048366: leaf development | 2.18E-02 |
| 112 | GO:0010311: lateral root formation | 2.23E-02 |
| 113 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.38E-02 |
| 114 | GO:0045087: innate immune response | 2.55E-02 |
| 115 | GO:0030001: metal ion transport | 2.80E-02 |
| 116 | GO:0009744: response to sucrose | 3.06E-02 |
| 117 | GO:0009640: photomorphogenesis | 3.06E-02 |
| 118 | GO:0016042: lipid catabolic process | 3.30E-02 |
| 119 | GO:0071555: cell wall organization | 3.48E-02 |
| 120 | GO:0031347: regulation of defense response | 3.50E-02 |
| 121 | GO:0009664: plant-type cell wall organization | 3.59E-02 |
| 122 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.87E-02 |
| 123 | GO:0009733: response to auxin | 4.01E-02 |
| 124 | GO:0009734: auxin-activated signaling pathway | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 2 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 3 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 4 | GO:0005504: fatty acid binding | 3.63E-06 |
| 5 | GO:0045430: chalcone isomerase activity | 1.59E-05 |
| 6 | GO:0051082: unfolded protein binding | 1.07E-04 |
| 7 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.40E-04 |
| 8 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.40E-04 |
| 9 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 1.40E-04 |
| 10 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.40E-04 |
| 11 | GO:0050308: sugar-phosphatase activity | 1.40E-04 |
| 12 | GO:0004134: 4-alpha-glucanotransferase activity | 1.40E-04 |
| 13 | GO:0009374: biotin binding | 1.40E-04 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 1.40E-04 |
| 15 | GO:0016630: protochlorophyllide reductase activity | 3.20E-04 |
| 16 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.20E-04 |
| 17 | GO:0004614: phosphoglucomutase activity | 3.20E-04 |
| 18 | GO:0031072: heat shock protein binding | 3.21E-04 |
| 19 | GO:0005262: calcium channel activity | 3.21E-04 |
| 20 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 5.26E-04 |
| 21 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 5.26E-04 |
| 22 | GO:0070330: aromatase activity | 5.26E-04 |
| 23 | GO:0043023: ribosomal large subunit binding | 7.53E-04 |
| 24 | GO:0016851: magnesium chelatase activity | 7.53E-04 |
| 25 | GO:0016279: protein-lysine N-methyltransferase activity | 9.98E-04 |
| 26 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 9.98E-04 |
| 27 | GO:0019199: transmembrane receptor protein kinase activity | 9.98E-04 |
| 28 | GO:0003989: acetyl-CoA carboxylase activity | 1.26E-03 |
| 29 | GO:0018685: alkane 1-monooxygenase activity | 1.26E-03 |
| 30 | GO:2001070: starch binding | 1.55E-03 |
| 31 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.55E-03 |
| 32 | GO:0051920: peroxiredoxin activity | 1.86E-03 |
| 33 | GO:0030674: protein binding, bridging | 2.52E-03 |
| 34 | GO:0016209: antioxidant activity | 2.52E-03 |
| 35 | GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity | 2.52E-03 |
| 36 | GO:0004033: aldo-keto reductase (NADP) activity | 2.52E-03 |
| 37 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 3.26E-03 |
| 38 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.26E-03 |
| 39 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.20E-03 |
| 40 | GO:0044183: protein binding involved in protein folding | 4.48E-03 |
| 41 | GO:0047372: acylglycerol lipase activity | 4.48E-03 |
| 42 | GO:0016298: lipase activity | 5.02E-03 |
| 43 | GO:0015266: protein channel activity | 5.37E-03 |
| 44 | GO:0008266: poly(U) RNA binding | 5.84E-03 |
| 45 | GO:0004650: polygalacturonase activity | 6.30E-03 |
| 46 | GO:0051536: iron-sulfur cluster binding | 7.32E-03 |
| 47 | GO:0005528: FK506 binding | 7.32E-03 |
| 48 | GO:0043424: protein histidine kinase binding | 7.84E-03 |
| 49 | GO:0033612: receptor serine/threonine kinase binding | 8.38E-03 |
| 50 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 8.87E-03 |
| 51 | GO:0016829: lyase activity | 9.35E-03 |
| 52 | GO:0030570: pectate lyase activity | 9.48E-03 |
| 53 | GO:0008810: cellulase activity | 9.48E-03 |
| 54 | GO:0030170: pyridoxal phosphate binding | 9.59E-03 |
| 55 | GO:0001085: RNA polymerase II transcription factor binding | 1.18E-02 |
| 56 | GO:0019901: protein kinase binding | 1.31E-02 |
| 57 | GO:0004872: receptor activity | 1.31E-02 |
| 58 | GO:0046983: protein dimerization activity | 1.45E-02 |
| 59 | GO:0042802: identical protein binding | 1.52E-02 |
| 60 | GO:0008483: transaminase activity | 1.64E-02 |
| 61 | GO:0005200: structural constituent of cytoskeleton | 1.64E-02 |
| 62 | GO:0016597: amino acid binding | 1.71E-02 |
| 63 | GO:0000287: magnesium ion binding | 1.82E-02 |
| 64 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.16E-02 |
| 65 | GO:0005507: copper ion binding | 2.25E-02 |
| 66 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.39E-02 |
| 67 | GO:0052689: carboxylic ester hydrolase activity | 2.54E-02 |
| 68 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.55E-02 |
| 69 | GO:0003746: translation elongation factor activity | 2.55E-02 |
| 70 | GO:0042803: protein homodimerization activity | 2.88E-02 |
| 71 | GO:0004185: serine-type carboxypeptidase activity | 3.06E-02 |
| 72 | GO:0043621: protein self-association | 3.23E-02 |
| 73 | GO:0005198: structural molecule activity | 3.32E-02 |
| 74 | GO:0051287: NAD binding | 3.50E-02 |
| 75 | GO:0003824: catalytic activity | 3.90E-02 |
| 76 | GO:0003777: microtubule motor activity | 4.06E-02 |
| 77 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.35E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.31E-14 |
| 2 | GO:0009570: chloroplast stroma | 1.36E-14 |
| 3 | GO:0009534: chloroplast thylakoid | 3.15E-12 |
| 4 | GO:0009941: chloroplast envelope | 1.20E-10 |
| 5 | GO:0009579: thylakoid | 2.81E-05 |
| 6 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.20E-04 |
| 7 | GO:0010007: magnesium chelatase complex | 5.26E-04 |
| 8 | GO:0030139: endocytic vesicle | 5.26E-04 |
| 9 | GO:0009317: acetyl-CoA carboxylase complex | 5.26E-04 |
| 10 | GO:0009532: plastid stroma | 6.07E-04 |
| 11 | GO:0032585: multivesicular body membrane | 7.53E-04 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 1.24E-03 |
| 13 | GO:0010319: stromule | 1.53E-03 |
| 14 | GO:0009986: cell surface | 2.18E-03 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 2.18E-03 |
| 16 | GO:0009501: amyloplast | 2.52E-03 |
| 17 | GO:0009535: chloroplast thylakoid membrane | 2.89E-03 |
| 18 | GO:0031977: thylakoid lumen | 3.33E-03 |
| 19 | GO:0090404: pollen tube tip | 4.48E-03 |
| 20 | GO:0009508: plastid chromosome | 5.37E-03 |
| 21 | GO:0043234: protein complex | 6.81E-03 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 7.84E-03 |
| 23 | GO:0042651: thylakoid membrane | 7.84E-03 |
| 24 | GO:0015629: actin cytoskeleton | 9.48E-03 |
| 25 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.01E-02 |
| 26 | GO:0005871: kinesin complex | 1.06E-02 |
| 27 | GO:0019898: extrinsic component of membrane | 1.31E-02 |
| 28 | GO:0046658: anchored component of plasma membrane | 1.58E-02 |
| 29 | GO:0009295: nucleoid | 1.64E-02 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 1.79E-02 |
| 31 | GO:0005667: transcription factor complex | 1.93E-02 |
| 32 | GO:0005874: microtubule | 2.22E-02 |
| 33 | GO:0031969: chloroplast membrane | 2.30E-02 |
| 34 | GO:0031225: anchored component of membrane | 2.52E-02 |
| 35 | GO:0005576: extracellular region | 4.36E-02 |
| 36 | GO:0009536: plastid | 4.47E-02 |
| 37 | GO:0009505: plant-type cell wall | 4.59E-02 |