co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044154: histone H3-K14 acetylation	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0000066: mitochondrial ornithine transport	2.68E-04
8	GO:0034757: negative regulation of iron ion transport	2.68E-04
9	GO:0043971: histone H3-K18 acetylation	2.68E-04
10	GO:0072387: flavin adenine dinucleotide metabolic process	2.68E-04
11	GO:0043087: regulation of GTPase activity	2.68E-04
12	GO:0043609: regulation of carbon utilization	2.68E-04
13	GO:0010343: singlet oxygen-mediated programmed cell death	5.89E-04
14	GO:1901529: positive regulation of anion channel activity	5.89E-04
15	GO:0006898: receptor-mediated endocytosis	5.89E-04
16	GO:0010617: circadian regulation of calcium ion oscillation	5.89E-04
17	GO:0010271: regulation of chlorophyll catabolic process	5.89E-04
18	GO:0099402: plant organ development	5.89E-04
19	GO:0001736: establishment of planar polarity	5.89E-04
20	GO:0010582: floral meristem determinacy	6.94E-04
21	GO:1902448: positive regulation of shade avoidance	9.55E-04
22	GO:0006000: fructose metabolic process	9.55E-04
23	GO:1901672: positive regulation of systemic acquired resistance	9.55E-04
24	GO:0080117: secondary growth	9.55E-04
25	GO:0051513: regulation of monopolar cell growth	1.36E-03
26	GO:0051639: actin filament network formation	1.36E-03
27	GO:0034059: response to anoxia	1.36E-03
28	GO:0009800: cinnamic acid biosynthetic process	1.36E-03
29	GO:1901332: negative regulation of lateral root development	1.36E-03
30	GO:0051764: actin crosslink formation	1.83E-03
31	GO:0015846: polyamine transport	1.83E-03
32	GO:0006021: inositol biosynthetic process	1.83E-03
33	GO:1902347: response to strigolactone	1.83E-03
34	GO:0010158: abaxial cell fate specification	2.33E-03
35	GO:0010117: photoprotection	2.33E-03
36	GO:0046283: anthocyanin-containing compound metabolic process	2.33E-03
37	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.88E-03
38	GO:1901371: regulation of leaf morphogenesis	2.88E-03
39	GO:0006559: L-phenylalanine catabolic process	2.88E-03
40	GO:0060918: auxin transport	2.88E-03
41	GO:0048831: regulation of shoot system development	2.88E-03
42	GO:0003006: developmental process involved in reproduction	2.88E-03
43	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.46E-03
44	GO:0010310: regulation of hydrogen peroxide metabolic process	3.46E-03
45	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.46E-03
46	GO:0048509: regulation of meristem development	3.46E-03
47	GO:0009610: response to symbiotic fungus	4.08E-03
48	GO:0006955: immune response	4.08E-03
49	GO:0010050: vegetative phase change	4.08E-03
50	GO:0051510: regulation of unidimensional cell growth	4.08E-03
51	GO:0000105: histidine biosynthetic process	4.73E-03
52	GO:0007155: cell adhesion	4.73E-03
53	GO:0006353: DNA-templated transcription, termination	4.73E-03
54	GO:0009850: auxin metabolic process	4.73E-03
55	GO:0010411: xyloglucan metabolic process	5.00E-03
56	GO:0006002: fructose 6-phosphate metabolic process	5.42E-03
57	GO:0009827: plant-type cell wall modification	5.42E-03
58	GO:0009657: plastid organization	5.42E-03
59	GO:0010052: guard cell differentiation	5.42E-03
60	GO:0032544: plastid translation	5.42E-03
61	GO:0044030: regulation of DNA methylation	5.42E-03
62	GO:0000160: phosphorelay signal transduction system	5.82E-03
63	GO:0006098: pentose-phosphate shunt	6.14E-03
64	GO:0048507: meristem development	6.14E-03
65	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.14E-03
66	GO:0046916: cellular transition metal ion homeostasis	6.14E-03
67	GO:0000373: Group II intron splicing	6.14E-03
68	GO:0007568: aging	6.40E-03
69	GO:1900426: positive regulation of defense response to bacterium	6.90E-03
70	GO:0009638: phototropism	6.90E-03
71	GO:0010018: far-red light signaling pathway	6.90E-03
72	GO:0008202: steroid metabolic process	6.90E-03
73	GO:0006535: cysteine biosynthetic process from serine	7.68E-03
74	GO:0048829: root cap development	7.68E-03
75	GO:0006415: translational termination	8.50E-03
76	GO:0009750: response to fructose	8.50E-03
77	GO:0048765: root hair cell differentiation	8.50E-03
78	GO:0006790: sulfur compound metabolic process	9.35E-03
79	GO:0042546: cell wall biogenesis	9.43E-03
80	GO:0010075: regulation of meristem growth	1.02E-02
81	GO:0006094: gluconeogenesis	1.02E-02
82	GO:0009636: response to toxic substance	1.02E-02
83	GO:0009785: blue light signaling pathway	1.02E-02
84	GO:0048467: gynoecium development	1.11E-02
85	GO:0010020: chloroplast fission	1.11E-02
86	GO:0046854: phosphatidylinositol phosphorylation	1.21E-02
87	GO:0080188: RNA-directed DNA methylation	1.21E-02
88	GO:0009736: cytokinin-activated signaling pathway	1.22E-02
89	GO:0042753: positive regulation of circadian rhythm	1.30E-02
90	GO:0006863: purine nucleobase transport	1.30E-02
91	GO:0080167: response to karrikin	1.37E-02
92	GO:0005992: trehalose biosynthetic process	1.40E-02
93	GO:0019344: cysteine biosynthetic process	1.40E-02
94	GO:0030150: protein import into mitochondrial matrix	1.40E-02
95	GO:0051017: actin filament bundle assembly	1.40E-02
96	GO:0006289: nucleotide-excision repair	1.40E-02
97	GO:2000377: regulation of reactive oxygen species metabolic process	1.40E-02
98	GO:0006096: glycolytic process	1.45E-02
99	GO:0003333: amino acid transmembrane transport	1.61E-02
100	GO:0016998: cell wall macromolecule catabolic process	1.61E-02
101	GO:0035428: hexose transmembrane transport	1.71E-02
102	GO:0016226: iron-sulfur cluster assembly	1.71E-02
103	GO:0071215: cellular response to abscisic acid stimulus	1.82E-02
104	GO:0070417: cellular response to cold	2.05E-02
105	GO:0010118: stomatal movement	2.17E-02
106	GO:0048653: anther development	2.17E-02
107	GO:0010087: phloem or xylem histogenesis	2.17E-02
108	GO:0046323: glucose import	2.29E-02
109	GO:0045489: pectin biosynthetic process	2.29E-02
110	GO:0009958: positive gravitropism	2.29E-02
111	GO:0048868: pollen tube development	2.29E-02
112	GO:0042752: regulation of circadian rhythm	2.41E-02
113	GO:0009646: response to absence of light	2.41E-02
114	GO:0009749: response to glucose	2.53E-02
115	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.65E-02
116	GO:0010583: response to cyclopentenone	2.78E-02
117	GO:0019761: glucosinolate biosynthetic process	2.78E-02
118	GO:0009639: response to red or far red light	3.04E-02
119	GO:0009451: RNA modification	3.09E-02
120	GO:0009734: auxin-activated signaling pathway	3.44E-02
121	GO:0007166: cell surface receptor signaling pathway	3.45E-02
122	GO:0001666: response to hypoxia	3.45E-02
123	GO:0010029: regulation of seed germination	3.59E-02
124	GO:0007165: signal transduction	4.16E-02
125	GO:0030244: cellulose biosynthetic process	4.17E-02
126	GO:0018298: protein-chromophore linkage	4.17E-02
127	GO:0010311: lateral root formation	4.32E-02
128	GO:0009733: response to auxin	4.41E-02
129	GO:0009834: plant-type secondary cell wall biogenesis	4.47E-02
130	GO:0006499: N-terminal protein myristoylation	4.47E-02
131	GO:0010218: response to far red light	4.47E-02
132	GO:0009416: response to light stimulus	4.57E-02
133	GO:0009658: chloroplast organization	4.66E-02
134	GO:0006865: amino acid transport	4.77E-02
135	GO:0009637: response to blue light	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.68E-04
7	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.68E-04
8	GO:0042834: peptidoglycan binding	2.68E-04
9	GO:0005290: L-histidine transmembrane transporter activity	2.68E-04
10	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.68E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.68E-04
12	GO:0004047: aminomethyltransferase activity	5.89E-04
13	GO:0052832: inositol monophosphate 3-phosphatase activity	5.89E-04
14	GO:0008805: carbon-monoxide oxygenase activity	5.89E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	5.89E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	5.89E-04
17	GO:0000064: L-ornithine transmembrane transporter activity	5.89E-04
18	GO:0050736: O-malonyltransferase activity	5.89E-04
19	GO:0009884: cytokinin receptor activity	5.89E-04
20	GO:0050017: L-3-cyanoalanine synthase activity	5.89E-04
21	GO:0045548: phenylalanine ammonia-lyase activity	9.55E-04
22	GO:0005034: osmosensor activity	9.55E-04
23	GO:0015189: L-lysine transmembrane transporter activity	1.36E-03
24	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.36E-03
25	GO:0015181: arginine transmembrane transporter activity	1.36E-03
26	GO:0009882: blue light photoreceptor activity	1.36E-03
27	GO:0043621: protein self-association	1.44E-03
28	GO:0010011: auxin binding	1.83E-03
29	GO:0010328: auxin influx transmembrane transporter activity	1.83E-03
30	GO:0010385: double-stranded methylated DNA binding	1.83E-03
31	GO:0070628: proteasome binding	1.83E-03
32	GO:0005471: ATP:ADP antiporter activity	2.33E-03
33	GO:0019901: protein kinase binding	2.75E-03
34	GO:2001070: starch binding	2.88E-03
35	GO:0004332: fructose-bisphosphate aldolase activity	2.88E-03
36	GO:0031593: polyubiquitin binding	2.88E-03
37	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.94E-03
38	GO:0004518: nuclease activity	3.14E-03
39	GO:0004124: cysteine synthase activity	3.46E-03
40	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.46E-03
41	GO:0019900: kinase binding	3.46E-03
42	GO:0019899: enzyme binding	4.08E-03
43	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.00E-03
44	GO:0008142: oxysterol binding	5.42E-03
45	GO:0046914: transition metal ion binding	5.42E-03
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.47E-03
47	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.75E-03
48	GO:0005096: GTPase activator activity	5.82E-03
49	GO:0003747: translation release factor activity	6.14E-03
50	GO:0071949: FAD binding	6.14E-03
51	GO:0015020: glucuronosyltransferase activity	7.68E-03
52	GO:0004673: protein histidine kinase activity	7.68E-03
53	GO:0004805: trehalose-phosphatase activity	7.68E-03
54	GO:0042802: identical protein binding	8.11E-03
55	GO:0008327: methyl-CpG binding	8.50E-03
56	GO:0035091: phosphatidylinositol binding	9.81E-03
57	GO:0000155: phosphorelay sensor kinase activity	1.02E-02
58	GO:0015266: protein channel activity	1.02E-02
59	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.30E-02
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.30E-02
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.30E-02
62	GO:0043130: ubiquitin binding	1.40E-02
63	GO:0043424: protein histidine kinase binding	1.50E-02
64	GO:0005345: purine nucleobase transmembrane transporter activity	1.50E-02
65	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.59E-02
66	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.59E-02
67	GO:0004402: histone acetyltransferase activity	2.17E-02
68	GO:0019843: rRNA binding	2.19E-02
69	GO:0004672: protein kinase activity	2.33E-02
70	GO:0010181: FMN binding	2.41E-02
71	GO:0005355: glucose transmembrane transporter activity	2.41E-02
72	GO:0000156: phosphorelay response regulator activity	2.91E-02
73	GO:0051015: actin filament binding	2.91E-02
74	GO:0003684: damaged DNA binding	3.04E-02
75	GO:0016413: O-acetyltransferase activity	3.31E-02
76	GO:0008194: UDP-glycosyltransferase activity	3.38E-02
77	GO:0051213: dioxygenase activity	3.45E-02
78	GO:0004806: triglyceride lipase activity	3.88E-02
79	GO:0004721: phosphoprotein phosphatase activity	3.88E-02
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.17E-02
81	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.47E-02
82	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0010370: perinucleolar chromocenter	2.68E-04
4	GO:0045254: pyruvate dehydrogenase complex	5.89E-04
5	GO:0016605: PML body	9.55E-04
6	GO:0032432: actin filament bundle	1.36E-03
7	GO:0009986: cell surface	4.08E-03
8	GO:0031982: vesicle	4.73E-03
9	GO:0031305: integral component of mitochondrial inner membrane	4.73E-03
10	GO:0005720: nuclear heterochromatin	6.14E-03
11	GO:0016604: nuclear body	6.90E-03
12	GO:0005884: actin filament	8.50E-03
13	GO:0005578: proteinaceous extracellular matrix	1.02E-02
14	GO:0016602: CCAAT-binding factor complex	1.02E-02
15	GO:0009574: preprophase band	1.02E-02
16	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.94E-02
17	GO:0005768: endosome	3.20E-02
18	GO:0046658: anchored component of plasma membrane	3.99E-02
19	GO:0009707: chloroplast outer membrane	4.17E-02
20	GO:0000151: ubiquitin ligase complex	4.17E-02