Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080127: fruit septum development0.00E+00
2GO:0006664: glycolipid metabolic process0.00E+00
3GO:1900037: regulation of cellular response to hypoxia0.00E+00
4GO:0006907: pinocytosis0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
7GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0009733: response to auxin5.26E-06
10GO:0046620: regulation of organ growth2.44E-05
11GO:0009926: auxin polar transport9.20E-05
12GO:0048497: maintenance of floral organ identity1.94E-04
13GO:0009734: auxin-activated signaling pathway2.50E-04
14GO:0034757: negative regulation of iron ion transport4.73E-04
15GO:0010726: positive regulation of hydrogen peroxide metabolic process4.73E-04
16GO:0046520: sphingoid biosynthetic process4.73E-04
17GO:0010271: regulation of chlorophyll catabolic process1.02E-03
18GO:0001736: establishment of planar polarity1.02E-03
19GO:0080009: mRNA methylation1.02E-03
20GO:0009786: regulation of asymmetric cell division1.02E-03
21GO:0043039: tRNA aminoacylation1.02E-03
22GO:0048829: root cap development1.18E-03
23GO:0080117: secondary growth1.66E-03
24GO:0071398: cellular response to fatty acid1.66E-03
25GO:0090506: axillary shoot meristem initiation1.66E-03
26GO:0009887: animal organ morphogenesis2.00E-03
27GO:0000160: phosphorelay signal transduction system2.18E-03
28GO:0006424: glutamyl-tRNA aminoacylation2.41E-03
29GO:0010321: regulation of vegetative phase change2.41E-03
30GO:0010371: regulation of gibberellin biosynthetic process2.41E-03
31GO:0051513: regulation of monopolar cell growth2.41E-03
32GO:0034059: response to anoxia2.41E-03
33GO:0007276: gamete generation2.41E-03
34GO:0006021: inositol biosynthetic process3.24E-03
35GO:0009956: radial pattern formation3.24E-03
36GO:0009755: hormone-mediated signaling pathway3.24E-03
37GO:0040008: regulation of growth3.83E-03
38GO:0071215: cellular response to abscisic acid stimulus4.03E-03
39GO:0009686: gibberellin biosynthetic process4.03E-03
40GO:0045487: gibberellin catabolic process4.15E-03
41GO:0016131: brassinosteroid metabolic process4.15E-03
42GO:0010438: cellular response to sulfur starvation4.15E-03
43GO:0042127: regulation of cell proliferation4.38E-03
44GO:0009416: response to light stimulus4.99E-03
45GO:0009913: epidermal cell differentiation5.14E-03
46GO:1902456: regulation of stomatal opening5.14E-03
47GO:0048831: regulation of shoot system development5.14E-03
48GO:0003006: developmental process involved in reproduction5.14E-03
49GO:0010942: positive regulation of cell death5.14E-03
50GO:0010087: phloem or xylem histogenesis5.14E-03
51GO:0010358: leaf shaping5.14E-03
52GO:0016554: cytidine to uridine editing5.14E-03
53GO:0010305: leaf vascular tissue pattern formation5.54E-03
54GO:0009958: positive gravitropism5.54E-03
55GO:0009741: response to brassinosteroid5.54E-03
56GO:0009736: cytokinin-activated signaling pathway5.60E-03
57GO:0031930: mitochondria-nucleus signaling pathway6.21E-03
58GO:0006694: steroid biosynthetic process6.21E-03
59GO:0048509: regulation of meristem development6.21E-03
60GO:0006351: transcription, DNA-templated6.54E-03
61GO:0016132: brassinosteroid biosynthetic process6.85E-03
62GO:0071554: cell wall organization or biogenesis6.85E-03
63GO:0010583: response to cyclopentenone7.32E-03
64GO:0000082: G1/S transition of mitotic cell cycle7.34E-03
65GO:0010098: suspensor development7.34E-03
66GO:0010444: guard mother cell differentiation7.34E-03
67GO:1900056: negative regulation of leaf senescence7.34E-03
68GO:0009658: chloroplast organization8.01E-03
69GO:0009639: response to red or far red light8.32E-03
70GO:0006402: mRNA catabolic process8.55E-03
71GO:0010439: regulation of glucosinolate biosynthetic process8.55E-03
72GO:0009704: de-etiolation8.55E-03
73GO:2000070: regulation of response to water deprivation8.55E-03
74GO:0010492: maintenance of shoot apical meristem identity8.55E-03
75GO:0000105: histidine biosynthetic process8.55E-03
76GO:0009819: drought recovery8.55E-03
77GO:0032544: plastid translation9.82E-03
78GO:0007186: G-protein coupled receptor signaling pathway9.82E-03
79GO:0046916: cellular transition metal ion homeostasis1.12E-02
80GO:0000373: Group II intron splicing1.12E-02
81GO:0048589: developmental growth1.12E-02
82GO:0009056: catabolic process1.12E-02
83GO:0048507: meristem development1.12E-02
84GO:0048573: photoperiodism, flowering1.17E-02
85GO:0010018: far-red light signaling pathway1.25E-02
86GO:1900865: chloroplast RNA modification1.25E-02
87GO:0010311: lateral root formation1.37E-02
88GO:0009870: defense response signaling pathway, resistance gene-dependent1.40E-02
89GO:0009641: shade avoidance1.40E-02
90GO:0006949: syncytium formation1.40E-02
91GO:0010629: negative regulation of gene expression1.40E-02
92GO:0016567: protein ubiquitination1.44E-02
93GO:0045892: negative regulation of transcription, DNA-templated1.49E-02
94GO:0009750: response to fructose1.55E-02
95GO:0048765: root hair cell differentiation1.55E-02
96GO:0009682: induced systemic resistance1.55E-02
97GO:0009867: jasmonic acid mediated signaling pathway1.65E-02
98GO:0045037: protein import into chloroplast stroma1.71E-02
99GO:0010582: floral meristem determinacy1.71E-02
100GO:0010152: pollen maturation1.71E-02
101GO:0010105: negative regulation of ethylene-activated signaling pathway1.71E-02
102GO:0006790: sulfur compound metabolic process1.71E-02
103GO:0012501: programmed cell death1.71E-02
104GO:2000028: regulation of photoperiodism, flowering1.87E-02
105GO:0010588: cotyledon vascular tissue pattern formation1.87E-02
106GO:0010102: lateral root morphogenesis1.87E-02
107GO:0016042: lipid catabolic process1.91E-02
108GO:0006631: fatty acid metabolic process1.97E-02
109GO:0009739: response to gibberellin2.04E-02
110GO:0010223: secondary shoot formation2.04E-02
111GO:0010540: basipetal auxin transport2.04E-02
112GO:0006302: double-strand break repair2.04E-02
113GO:0048467: gynoecium development2.04E-02
114GO:0009933: meristem structural organization2.04E-02
115GO:0009744: response to sucrose2.14E-02
116GO:0090351: seedling development2.21E-02
117GO:0046854: phosphatidylinositol phosphorylation2.21E-02
118GO:0009825: multidimensional cell growth2.21E-02
119GO:0042546: cell wall biogenesis2.22E-02
120GO:0042753: positive regulation of circadian rhythm2.39E-02
121GO:0006863: purine nucleobase transport2.39E-02
122GO:0009636: response to toxic substance2.40E-02
123GO:0005992: trehalose biosynthetic process2.57E-02
124GO:0006355: regulation of transcription, DNA-templated2.68E-02
125GO:0019953: sexual reproduction2.76E-02
126GO:0051321: meiotic cell cycle2.95E-02
127GO:0016114: terpenoid biosynthetic process2.95E-02
128GO:0003333: amino acid transmembrane transport2.95E-02
129GO:0010431: seed maturation2.95E-02
130GO:0007005: mitochondrion organization3.15E-02
131GO:0009909: regulation of flower development3.19E-02
132GO:0010082: regulation of root meristem growth3.35E-02
133GO:0001944: vasculature development3.35E-02
134GO:0009625: response to insect3.35E-02
135GO:0009693: ethylene biosynthetic process3.35E-02
136GO:0006468: protein phosphorylation3.45E-02
137GO:0010091: trichome branching3.56E-02
138GO:0048443: stamen development3.56E-02
139GO:0009723: response to ethylene3.67E-02
140GO:0070417: cellular response to cold3.77E-02
141GO:0080022: primary root development3.98E-02
142GO:0010118: stomatal movement3.98E-02
143GO:0009793: embryo development ending in seed dormancy4.08E-02
144GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.16E-02
145GO:0010182: sugar mediated signaling pathway4.20E-02
146GO:0010268: brassinosteroid homeostasis4.20E-02
147GO:0051726: regulation of cell cycle4.34E-02
148GO:0007018: microtubule-based movement4.42E-02
149GO:0009646: response to absence of light4.42E-02
150GO:0048825: cotyledon development4.65E-02
151GO:0009749: response to glucose4.65E-02
152GO:0002229: defense response to oomycetes4.88E-02
RankGO TermAdjusted P value
1GO:0004401: histidinol-phosphatase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0001872: (1->3)-beta-D-glucan binding7.23E-05
7GO:0010011: auxin binding1.26E-04
8GO:0004818: glutamate-tRNA ligase activity4.73E-04
9GO:0010347: L-galactose-1-phosphate phosphatase activity4.73E-04
10GO:0010012: steroid 22-alpha hydroxylase activity4.73E-04
11GO:0000170: sphingosine hydroxylase activity4.73E-04
12GO:0005227: calcium activated cation channel activity4.73E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.73E-04
14GO:0050736: O-malonyltransferase activity1.02E-03
15GO:0009884: cytokinin receptor activity1.02E-03
16GO:0045543: gibberellin 2-beta-dioxygenase activity1.02E-03
17GO:0010296: prenylcysteine methylesterase activity1.02E-03
18GO:0052832: inositol monophosphate 3-phosphatase activity1.02E-03
19GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.02E-03
20GO:0008805: carbon-monoxide oxygenase activity1.02E-03
21GO:0042284: sphingolipid delta-4 desaturase activity1.02E-03
22GO:0008934: inositol monophosphate 1-phosphatase activity1.02E-03
23GO:0052833: inositol monophosphate 4-phosphatase activity1.02E-03
24GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.02E-03
25GO:0004871: signal transducer activity1.16E-03
26GO:0005034: osmosensor activity1.66E-03
27GO:0016707: gibberellin 3-beta-dioxygenase activity1.66E-03
28GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.41E-03
29GO:0005345: purine nucleobase transmembrane transporter activity3.06E-03
30GO:0046527: glucosyltransferase activity3.24E-03
31GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.24E-03
32GO:0010328: auxin influx transmembrane transporter activity3.24E-03
33GO:0019199: transmembrane receptor protein kinase activity3.24E-03
34GO:0003700: transcription factor activity, sequence-specific DNA binding3.36E-03
35GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.15E-03
36GO:0004523: RNA-DNA hybrid ribonuclease activity4.15E-03
37GO:0004722: protein serine/threonine phosphatase activity4.70E-03
38GO:0004709: MAP kinase kinase kinase activity5.14E-03
39GO:0000293: ferric-chelate reductase activity5.14E-03
40GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity5.54E-03
41GO:0019900: kinase binding6.21E-03
42GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.21E-03
43GO:0016832: aldehyde-lyase activity6.21E-03
44GO:0004518: nuclease activity7.32E-03
45GO:0000156: phosphorelay response regulator activity7.81E-03
46GO:0003779: actin binding8.47E-03
47GO:0016413: O-acetyltransferase activity9.38E-03
48GO:0046914: transition metal ion binding9.82E-03
49GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.12E-02
50GO:0030247: polysaccharide binding1.17E-02
51GO:0052689: carboxylic ester hydrolase activity1.29E-02
52GO:0004673: protein histidine kinase activity1.40E-02
53GO:0004805: trehalose-phosphatase activity1.40E-02
54GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.51E-02
55GO:0000049: tRNA binding1.71E-02
56GO:0003725: double-stranded RNA binding1.87E-02
57GO:0000155: phosphorelay sensor kinase activity1.87E-02
58GO:0003712: transcription cofactor activity2.21E-02
59GO:0004190: aspartic-type endopeptidase activity2.21E-02
60GO:0009055: electron carrier activity2.22E-02
61GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.39E-02
62GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.39E-02
63GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.39E-02
64GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.51E-02
65GO:0008134: transcription factor binding2.57E-02
66GO:0031418: L-ascorbic acid binding2.57E-02
67GO:0016301: kinase activity2.64E-02
68GO:0043424: protein histidine kinase binding2.76E-02
69GO:0033612: receptor serine/threonine kinase binding2.95E-02
70GO:0003964: RNA-directed DNA polymerase activity2.95E-02
71GO:0008408: 3'-5' exonuclease activity2.95E-02
72GO:0010333: terpene synthase activity2.95E-02
73GO:0016298: lipase activity2.98E-02
74GO:0016788: hydrolase activity, acting on ester bonds3.13E-02
75GO:0003723: RNA binding3.54E-02
76GO:0016874: ligase activity3.86E-02
77GO:0005199: structural constituent of cell wall4.20E-02
78GO:0015035: protein disulfide oxidoreductase activity4.21E-02
79GO:0050662: coenzyme binding4.42E-02
80GO:0004674: protein serine/threonine kinase activity4.49E-02
81GO:0003677: DNA binding4.88E-02
82GO:0016762: xyloglucan:xyloglucosyl transferase activity4.88E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0000791: euchromatin4.73E-04
4GO:0009986: cell surface4.74E-04
5GO:0030870: Mre11 complex1.02E-03
6GO:0030139: endocytic vesicle1.66E-03
7GO:0032585: multivesicular body membrane2.41E-03
8GO:0000795: synaptonemal complex4.15E-03
9GO:0005886: plasma membrane4.22E-03
10GO:0005884: actin filament1.55E-02
11GO:0030095: chloroplast photosystem II2.04E-02
12GO:0005875: microtubule associated complex2.39E-02
13GO:0046658: anchored component of plasma membrane2.52E-02
14GO:0009654: photosystem II oxygen evolving complex2.76E-02
15GO:0009532: plastid stroma2.95E-02
16GO:0031225: anchored component of membrane3.31E-02
17GO:0005871: kinesin complex3.77E-02
18GO:0019898: extrinsic component of membrane4.65E-02
19GO:0009504: cell plate4.65E-02
<
Gene type



Gene DE type