co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
2	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
3	GO:1905177: tracheary element differentiation	0.00E+00
4	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
5	GO:0070979: protein K11-linked ubiquitination	0.00E+00
6	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0007037: vacuolar phosphate transport	0.00E+00
9	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
10	GO:0006573: valine metabolic process	0.00E+00
11	GO:0045184: establishment of protein localization	0.00E+00
12	GO:1900871: chloroplast mRNA modification	5.13E-06
13	GO:0080110: sporopollenin biosynthetic process	1.12E-04
14	GO:0009082: branched-chain amino acid biosynthetic process	2.20E-04
15	GO:0009099: valine biosynthetic process	2.20E-04
16	GO:0009090: homoserine biosynthetic process	3.37E-04
17	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.37E-04
18	GO:0043266: regulation of potassium ion transport	3.37E-04
19	GO:0010080: regulation of floral meristem growth	3.37E-04
20	GO:0006551: leucine metabolic process	3.37E-04
21	GO:2000021: regulation of ion homeostasis	3.37E-04
22	GO:0035987: endodermal cell differentiation	3.37E-04
23	GO:0051247: positive regulation of protein metabolic process	3.37E-04
24	GO:0000066: mitochondrial ornithine transport	3.37E-04
25	GO:2000905: negative regulation of starch metabolic process	3.37E-04
26	GO:0042659: regulation of cell fate specification	3.37E-04
27	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.37E-04
28	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.37E-04
29	GO:0090558: plant epidermis development	3.37E-04
30	GO:0009097: isoleucine biosynthetic process	4.41E-04
31	GO:1900865: chloroplast RNA modification	6.25E-04
32	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	7.34E-04
33	GO:1900033: negative regulation of trichome patterning	7.34E-04
34	GO:0010024: phytochromobilin biosynthetic process	7.34E-04
35	GO:0060359: response to ammonium ion	7.34E-04
36	GO:0010582: floral meristem determinacy	9.59E-04
37	GO:0009725: response to hormone	1.08E-03
38	GO:0048586: regulation of long-day photoperiodism, flowering	1.19E-03
39	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.19E-03
40	GO:0010623: programmed cell death involved in cell development	1.19E-03
41	GO:0090153: regulation of sphingolipid biosynthetic process	1.19E-03
42	GO:0043157: response to cation stress	1.19E-03
43	GO:0071398: cellular response to fatty acid	1.19E-03
44	GO:0033591: response to L-ascorbic acid	1.19E-03
45	GO:0090708: specification of plant organ axis polarity	1.19E-03
46	GO:0006788: heme oxidation	1.19E-03
47	GO:0010022: meristem determinacy	1.19E-03
48	GO:0005992: trehalose biosynthetic process	1.68E-03
49	GO:1990019: protein storage vacuole organization	1.71E-03
50	GO:0010306: rhamnogalacturonan II biosynthetic process	1.71E-03
51	GO:0046739: transport of virus in multicellular host	1.71E-03
52	GO:2001141: regulation of RNA biosynthetic process	1.71E-03
53	GO:0046836: glycolipid transport	1.71E-03
54	GO:0009067: aspartate family amino acid biosynthetic process	1.71E-03
55	GO:0051513: regulation of monopolar cell growth	1.71E-03
56	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.71E-03
57	GO:0042989: sequestering of actin monomers	1.71E-03
58	GO:0009416: response to light stimulus	1.81E-03
59	GO:0030104: water homeostasis	2.30E-03
60	GO:0048629: trichome patterning	2.30E-03
61	GO:0042274: ribosomal small subunit biogenesis	2.30E-03
62	GO:0048442: sepal development	2.30E-03
63	GO:2000306: positive regulation of photomorphogenesis	2.30E-03
64	GO:0010508: positive regulation of autophagy	2.30E-03
65	GO:0010584: pollen exine formation	2.65E-03
66	GO:0016131: brassinosteroid metabolic process	2.93E-03
67	GO:0030041: actin filament polymerization	2.93E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	2.93E-03
69	GO:0016123: xanthophyll biosynthetic process	2.93E-03
70	GO:0010158: abaxial cell fate specification	2.93E-03
71	GO:0032876: negative regulation of DNA endoreduplication	2.93E-03
72	GO:0048868: pollen tube development	3.34E-03
73	GO:0009959: negative gravitropism	3.63E-03
74	GO:0016554: cytidine to uridine editing	3.63E-03
75	GO:0009658: chloroplast organization	3.68E-03
76	GO:0000302: response to reactive oxygen species	4.12E-03
77	GO:0042372: phylloquinone biosynthetic process	4.37E-03
78	GO:0010076: maintenance of floral meristem identity	4.37E-03
79	GO:0017148: negative regulation of translation	4.37E-03
80	GO:0030488: tRNA methylation	4.37E-03
81	GO:0009088: threonine biosynthetic process	4.37E-03
82	GO:0009648: photoperiodism	4.37E-03
83	GO:2000067: regulation of root morphogenesis	4.37E-03
84	GO:0010098: suspensor development	5.15E-03
85	GO:0051510: regulation of unidimensional cell growth	5.15E-03
86	GO:0006955: immune response	5.15E-03
87	GO:0010050: vegetative phase change	5.15E-03
88	GO:0070413: trehalose metabolism in response to stress	5.99E-03
89	GO:0009850: auxin metabolic process	5.99E-03
90	GO:0032875: regulation of DNA endoreduplication	5.99E-03
91	GO:0055075: potassium ion homeostasis	5.99E-03
92	GO:0048564: photosystem I assembly	5.99E-03
93	GO:0032544: plastid translation	6.87E-03
94	GO:0071482: cellular response to light stimulus	6.87E-03
95	GO:0010497: plasmodesmata-mediated intercellular transport	6.87E-03
96	GO:0009657: plastid organization	6.87E-03
97	GO:0000373: Group II intron splicing	7.79E-03
98	GO:0006098: pentose-phosphate shunt	7.79E-03
99	GO:0040008: regulation of growth	8.70E-03
100	GO:2000280: regulation of root development	8.75E-03
101	GO:0009098: leucine biosynthetic process	8.75E-03
102	GO:0010018: far-red light signaling pathway	8.75E-03
103	GO:0009086: methionine biosynthetic process	8.75E-03
104	GO:0009451: RNA modification	9.51E-03
105	GO:0009299: mRNA transcription	9.76E-03
106	GO:0006259: DNA metabolic process	9.76E-03
107	GO:0048441: petal development	9.76E-03
108	GO:0006415: translational termination	1.08E-02
109	GO:0006265: DNA topological change	1.08E-02
110	GO:0009089: lysine biosynthetic process via diaminopimelate	1.08E-02
111	GO:0006352: DNA-templated transcription, initiation	1.08E-02
112	GO:0006839: mitochondrial transport	1.13E-02
113	GO:0006631: fatty acid metabolic process	1.18E-02
114	GO:0006094: gluconeogenesis	1.30E-02
115	GO:0010207: photosystem II assembly	1.42E-02
116	GO:0048440: carpel development	1.42E-02
117	GO:0006541: glutamine metabolic process	1.42E-02
118	GO:0090351: seedling development	1.54E-02
119	GO:0042753: positive regulation of circadian rhythm	1.66E-02
120	GO:0006833: water transport	1.66E-02
121	GO:0080147: root hair cell development	1.79E-02
122	GO:0030150: protein import into mitochondrial matrix	1.79E-02
123	GO:0007010: cytoskeleton organization	1.79E-02
124	GO:0051302: regulation of cell division	1.92E-02
125	GO:0016998: cell wall macromolecule catabolic process	2.05E-02
126	GO:0010431: seed maturation	2.05E-02
127	GO:0048316: seed development	2.11E-02
128	GO:0006730: one-carbon metabolic process	2.19E-02
129	GO:0009740: gibberellic acid mediated signaling pathway	2.32E-02
130	GO:0009693: ethylene biosynthetic process	2.33E-02
131	GO:0010089: xylem development	2.47E-02
132	GO:0048443: stamen development	2.47E-02
133	GO:0019722: calcium-mediated signaling	2.47E-02
134	GO:0034220: ion transmembrane transport	2.77E-02
135	GO:0010087: phloem or xylem histogenesis	2.77E-02
136	GO:0009741: response to brassinosteroid	2.92E-02
137	GO:0010268: brassinosteroid homeostasis	2.92E-02
138	GO:0045489: pectin biosynthetic process	2.92E-02
139	GO:0048544: recognition of pollen	3.07E-02
140	GO:0007059: chromosome segregation	3.07E-02
141	GO:0009845: seed germination	3.33E-02
142	GO:0055114: oxidation-reduction process	3.38E-02
143	GO:0010583: response to cyclopentenone	3.55E-02
144	GO:0016032: viral process	3.55E-02
145	GO:0009630: gravitropism	3.55E-02
146	GO:0007264: small GTPase mediated signal transduction	3.55E-02
147	GO:0009639: response to red or far red light	3.88E-02
148	GO:0006464: cellular protein modification process	3.88E-02
149	GO:0006914: autophagy	3.88E-02
150	GO:0007267: cell-cell signaling	4.05E-02
151	GO:0001666: response to hypoxia	4.40E-02
152	GO:0010027: thylakoid membrane organization	4.40E-02
153	GO:0016126: sterol biosynthetic process	4.40E-02
154	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.58E-02
155	GO:0010029: regulation of seed germination	4.58E-02
156	GO:0007166: cell surface receptor signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0003984: acetolactate synthase activity	3.37E-04
4	GO:0008158: hedgehog receptor activity	3.37E-04
5	GO:0008395: steroid hydroxylase activity	3.37E-04
6	GO:0008242: omega peptidase activity	3.37E-04
7	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.37E-04
8	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	3.37E-04
9	GO:0005227: calcium activated cation channel activity	3.37E-04
10	GO:0042834: peptidoglycan binding	3.37E-04
11	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.37E-04
12	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.37E-04
13	GO:0005290: L-histidine transmembrane transporter activity	3.37E-04
14	GO:0004805: trehalose-phosphatase activity	7.29E-04
15	GO:0050736: O-malonyltransferase activity	7.34E-04
16	GO:0048531: beta-1,3-galactosyltransferase activity	7.34E-04
17	GO:0034722: gamma-glutamyl-peptidase activity	7.34E-04
18	GO:0017118: lipoyltransferase activity	7.34E-04
19	GO:0080041: ADP-ribose pyrophosphohydrolase activity	7.34E-04
20	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	7.34E-04
21	GO:0043425: bHLH transcription factor binding	7.34E-04
22	GO:0008805: carbon-monoxide oxygenase activity	7.34E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	7.34E-04
24	GO:0004412: homoserine dehydrogenase activity	7.34E-04
25	GO:0004148: dihydrolipoyl dehydrogenase activity	1.19E-03
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.71E-03
27	GO:0016149: translation release factor activity, codon specific	1.71E-03
28	GO:0017172: cysteine dioxygenase activity	1.71E-03
29	GO:0052656: L-isoleucine transaminase activity	1.71E-03
30	GO:0043023: ribosomal large subunit binding	1.71E-03
31	GO:0052654: L-leucine transaminase activity	1.71E-03
32	GO:0004300: enoyl-CoA hydratase activity	1.71E-03
33	GO:0052655: L-valine transaminase activity	1.71E-03
34	GO:0001872: (1->3)-beta-D-glucan binding	1.71E-03
35	GO:0015189: L-lysine transmembrane transporter activity	1.71E-03
36	GO:0017089: glycolipid transporter activity	1.71E-03
37	GO:0004072: aspartate kinase activity	1.71E-03
38	GO:0015181: arginine transmembrane transporter activity	1.71E-03
39	GO:0004392: heme oxygenase (decyclizing) activity	2.30E-03
40	GO:0001053: plastid sigma factor activity	2.30E-03
41	GO:0005319: lipid transporter activity	2.30E-03
42	GO:0051861: glycolipid binding	2.30E-03
43	GO:0016987: sigma factor activity	2.30E-03
44	GO:0004084: branched-chain-amino-acid transaminase activity	2.30E-03
45	GO:0003785: actin monomer binding	2.93E-03
46	GO:0050662: coenzyme binding	3.59E-03
47	GO:0004462: lactoylglutathione lyase activity	3.63E-03
48	GO:0016688: L-ascorbate peroxidase activity	3.63E-03
49	GO:0008200: ion channel inhibitor activity	3.63E-03
50	GO:0004332: fructose-bisphosphate aldolase activity	3.63E-03
51	GO:0004130: cytochrome-c peroxidase activity	3.63E-03
52	GO:0008195: phosphatidate phosphatase activity	4.37E-03
53	GO:0016597: amino acid binding	5.63E-03
54	GO:0043022: ribosome binding	5.99E-03
55	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.87E-03
56	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.79E-03
57	GO:0003747: translation release factor activity	7.79E-03
58	GO:0004222: metalloendopeptidase activity	8.59E-03
59	GO:0003993: acid phosphatase activity	1.03E-02
60	GO:0004519: endonuclease activity	1.05E-02
61	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.08E-02
62	GO:0016491: oxidoreductase activity	1.24E-02
63	GO:0009982: pseudouridine synthase activity	1.30E-02
64	GO:0015266: protein channel activity	1.30E-02
65	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.42E-02
66	GO:0008146: sulfotransferase activity	1.54E-02
67	GO:0051536: iron-sulfur cluster binding	1.79E-02
68	GO:0031418: L-ascorbic acid binding	1.79E-02
69	GO:0016787: hydrolase activity	3.12E-02
70	GO:0004872: receptor activity	3.23E-02
71	GO:0019901: protein kinase binding	3.23E-02
72	GO:0016791: phosphatase activity	3.88E-02
73	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.96E-02
74	GO:0015250: water channel activity	4.40E-02
75	GO:0030247: polysaccharide binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0009507: chloroplast	6.81E-11
3	GO:0043190: ATP-binding cassette (ABC) transporter complex	3.37E-04
4	GO:0080085: signal recognition particle, chloroplast targeting	7.34E-04
5	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.30E-03
6	GO:0042807: central vacuole	5.15E-03
7	GO:0009570: chloroplast stroma	5.28E-03
8	GO:0009295: nucleoid	5.31E-03
9	GO:0031305: integral component of mitochondrial inner membrane	5.99E-03
10	GO:0048226: Casparian strip	5.99E-03
11	GO:0009501: amyloplast	5.99E-03
12	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.87E-03
13	GO:0000326: protein storage vacuole	6.87E-03
14	GO:0005680: anaphase-promoting complex	7.79E-03
15	GO:0016604: nuclear body	8.75E-03
16	GO:0009705: plant-type vacuole membrane	9.23E-03
17	GO:0000311: plastid large ribosomal subunit	1.19E-02
18	GO:0005938: cell cortex	1.30E-02
19	GO:0009508: plastid chromosome	1.30E-02
20	GO:0046658: anchored component of plasma membrane	1.32E-02
21	GO:0030095: chloroplast photosystem II	1.42E-02
22	GO:0030176: integral component of endoplasmic reticulum membrane	1.54E-02
23	GO:0009654: photosystem II oxygen evolving complex	1.92E-02
24	GO:0015629: actin cytoskeleton	2.33E-02
25	GO:0009706: chloroplast inner membrane	2.46E-02
26	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.47E-02
27	GO:0019898: extrinsic component of membrane	3.23E-02
28	GO:0009535: chloroplast thylakoid membrane	3.38E-02
29	GO:0043231: intracellular membrane-bounded organelle	3.88E-02
30	GO:0031225: anchored component of membrane	4.20E-02