Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018063: cytochrome c-heme linkage0.00E+00
2GO:0010793: regulation of mRNA export from nucleus0.00E+00
3GO:0051553: flavone biosynthetic process0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0010055: atrichoblast differentiation0.00E+00
6GO:1902001: fatty acid transmembrane transport0.00E+00
7GO:0097237: cellular response to toxic substance0.00E+00
8GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
9GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
10GO:0051707: response to other organism1.65E-05
11GO:0001676: long-chain fatty acid metabolic process2.99E-05
12GO:0051607: defense response to virus4.45E-05
13GO:0009617: response to bacterium4.54E-05
14GO:0009636: response to toxic substance2.41E-04
15GO:0034214: protein hexamerization2.84E-04
16GO:0006680: glucosylceramide catabolic process2.84E-04
17GO:0032107: regulation of response to nutrient levels2.84E-04
18GO:0033306: phytol metabolic process2.84E-04
19GO:0010482: regulation of epidermal cell division2.84E-04
20GO:0010230: alternative respiration2.84E-04
21GO:0009651: response to salt stress3.42E-04
22GO:0046686: response to cadmium ion3.60E-04
23GO:0042742: defense response to bacterium3.92E-04
24GO:0010112: regulation of systemic acquired resistance4.15E-04
25GO:0009620: response to fungus4.92E-04
26GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.25E-04
27GO:0019725: cellular homeostasis6.25E-04
28GO:0071497: cellular response to freezing6.25E-04
29GO:0071668: plant-type cell wall assembly6.25E-04
30GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.25E-04
31GO:0055088: lipid homeostasis6.25E-04
32GO:0050684: regulation of mRNA processing6.25E-04
33GO:0019374: galactolipid metabolic process6.25E-04
34GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex6.25E-04
35GO:0015908: fatty acid transport6.25E-04
36GO:0000719: photoreactive repair6.25E-04
37GO:0009627: systemic acquired resistance6.53E-04
38GO:0015031: protein transport7.10E-04
39GO:0009813: flavonoid biosynthetic process8.44E-04
40GO:0009407: toxin catabolic process8.97E-04
41GO:0061158: 3'-UTR-mediated mRNA destabilization1.01E-03
42GO:0006556: S-adenosylmethionine biosynthetic process1.01E-03
43GO:0010186: positive regulation of cellular defense response1.01E-03
44GO:0010476: gibberellin mediated signaling pathway1.01E-03
45GO:0010325: raffinose family oligosaccharide biosynthetic process1.01E-03
46GO:0010272: response to silver ion1.01E-03
47GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.01E-03
48GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.01E-03
49GO:0032784: regulation of DNA-templated transcription, elongation1.01E-03
50GO:0009611: response to wounding1.15E-03
51GO:0010150: leaf senescence1.29E-03
52GO:0080024: indolebutyric acid metabolic process1.45E-03
53GO:0010116: positive regulation of abscisic acid biosynthetic process1.45E-03
54GO:0070301: cellular response to hydrogen peroxide1.45E-03
55GO:0002239: response to oomycetes1.45E-03
56GO:0009751: response to salicylic acid1.47E-03
57GO:0016998: cell wall macromolecule catabolic process1.60E-03
58GO:0006012: galactose metabolic process1.91E-03
59GO:0009693: ethylene biosynthetic process1.91E-03
60GO:0015867: ATP transport1.94E-03
61GO:0010188: response to microbial phytotoxin1.94E-03
62GO:0060548: negative regulation of cell death1.94E-03
63GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.94E-03
64GO:0006621: protein retention in ER lumen1.94E-03
65GO:1901002: positive regulation of response to salt stress1.94E-03
66GO:0051567: histone H3-K9 methylation1.94E-03
67GO:0006970: response to osmotic stress2.82E-03
68GO:0015866: ADP transport3.06E-03
69GO:0006777: Mo-molybdopterin cofactor biosynthetic process3.06E-03
70GO:0010256: endomembrane system organization3.06E-03
71GO:0006635: fatty acid beta-oxidation3.22E-03
72GO:0048444: floral organ morphogenesis3.68E-03
73GO:0050829: defense response to Gram-negative bacterium4.34E-03
74GO:1902074: response to salt4.34E-03
75GO:1900056: negative regulation of leaf senescence4.34E-03
76GO:0080186: developmental vegetative growth4.34E-03
77GO:0000122: negative regulation of transcription from RNA polymerase II promoter4.34E-03
78GO:0009615: response to virus4.64E-03
79GO:0006886: intracellular protein transport4.81E-03
80GO:0006605: protein targeting5.03E-03
81GO:0006644: phospholipid metabolic process5.03E-03
82GO:0030091: protein repair5.03E-03
83GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.03E-03
84GO:0009819: drought recovery5.03E-03
85GO:0006997: nucleus organization5.77E-03
86GO:0010204: defense response signaling pathway, resistance gene-independent5.77E-03
87GO:0017004: cytochrome complex assembly5.77E-03
88GO:0010208: pollen wall assembly5.77E-03
89GO:0010497: plasmodesmata-mediated intercellular transport5.77E-03
90GO:0040008: regulation of growth6.32E-03
91GO:0010311: lateral root formation6.37E-03
92GO:0009056: catabolic process6.54E-03
93GO:0009835: fruit ripening6.54E-03
94GO:0007338: single fertilization6.54E-03
95GO:0046685: response to arsenic-containing substance6.54E-03
96GO:0019432: triglyceride biosynthetic process6.54E-03
97GO:0010043: response to zinc ion7.01E-03
98GO:0048527: lateral root development7.01E-03
99GO:0009753: response to jasmonic acid7.03E-03
100GO:0008152: metabolic process7.33E-03
101GO:0008202: steroid metabolic process7.35E-03
102GO:0009638: phototropism7.35E-03
103GO:0090332: stomatal closure7.35E-03
104GO:2000280: regulation of root development7.35E-03
105GO:0048268: clathrin coat assembly7.35E-03
106GO:0055114: oxidation-reduction process7.66E-03
107GO:0006032: chitin catabolic process8.19E-03
108GO:0009688: abscisic acid biosynthetic process8.19E-03
109GO:0016441: posttranscriptional gene silencing8.19E-03
110GO:0019538: protein metabolic process8.19E-03
111GO:0009870: defense response signaling pathway, resistance gene-dependent8.19E-03
112GO:1903507: negative regulation of nucleic acid-templated transcription9.06E-03
113GO:0000272: polysaccharide catabolic process9.06E-03
114GO:0048765: root hair cell differentiation9.06E-03
115GO:0006897: endocytosis9.14E-03
116GO:0006631: fatty acid metabolic process9.14E-03
117GO:0006890: retrograde vesicle-mediated transport, Golgi to ER9.96E-03
118GO:0002213: defense response to insect9.96E-03
119GO:0045037: protein import into chloroplast stroma9.96E-03
120GO:2000028: regulation of photoperiodism, flowering1.09E-02
121GO:0009785: blue light signaling pathway1.09E-02
122GO:0090351: seedling development1.29E-02
123GO:0009225: nucleotide-sugar metabolic process1.29E-02
124GO:0042343: indole glucosinolate metabolic process1.29E-02
125GO:0009414: response to water deprivation1.36E-02
126GO:0009723: response to ethylene1.41E-02
127GO:0050832: defense response to fungus1.42E-02
128GO:0006979: response to oxidative stress1.44E-02
129GO:0080147: root hair cell development1.50E-02
130GO:0051302: regulation of cell division1.60E-02
131GO:0006874: cellular calcium ion homeostasis1.60E-02
132GO:0010026: trichome differentiation1.60E-02
133GO:0009695: jasmonic acid biosynthetic process1.60E-02
134GO:0098542: defense response to other organism1.72E-02
135GO:0006730: one-carbon metabolic process1.83E-02
136GO:0071456: cellular response to hypoxia1.83E-02
137GO:0016226: iron-sulfur cluster assembly1.83E-02
138GO:2000022: regulation of jasmonic acid mediated signaling pathway1.83E-02
139GO:0045893: positive regulation of transcription, DNA-templated1.85E-02
140GO:0009411: response to UV1.95E-02
141GO:0042147: retrograde transport, endosome to Golgi2.19E-02
142GO:0042391: regulation of membrane potential2.31E-02
143GO:0010118: stomatal movement2.31E-02
144GO:0006662: glycerol ether metabolic process2.44E-02
145GO:0010182: sugar mediated signaling pathway2.44E-02
146GO:0046323: glucose import2.44E-02
147GO:0006520: cellular amino acid metabolic process2.44E-02
148GO:0048544: recognition of pollen2.57E-02
149GO:0006814: sodium ion transport2.57E-02
150GO:0006623: protein targeting to vacuole2.70E-02
151GO:0006891: intra-Golgi vesicle-mediated transport2.83E-02
152GO:0010193: response to ozone2.83E-02
153GO:0071554: cell wall organization or biogenesis2.83E-02
154GO:0002229: defense response to oomycetes2.83E-02
155GO:0000302: response to reactive oxygen species2.83E-02
156GO:0009630: gravitropism2.97E-02
157GO:0071281: cellular response to iron ion3.11E-02
158GO:0009567: double fertilization forming a zygote and endosperm3.25E-02
159GO:0019760: glucosinolate metabolic process3.25E-02
160GO:0006508: proteolysis3.80E-02
161GO:0009816: defense response to bacterium, incompatible interaction3.83E-02
162GO:0009734: auxin-activated signaling pathway3.85E-02
163GO:0006974: cellular response to DNA damage stimulus3.98E-02
164GO:0006906: vesicle fusion3.98E-02
165GO:0009817: defense response to fungus, incompatible interaction4.45E-02
RankGO TermAdjusted P value
1GO:0015148: D-xylose transmembrane transporter activity0.00E+00
2GO:2001147: camalexin binding0.00E+00
3GO:0005365: myo-inositol transmembrane transporter activity0.00E+00
4GO:0015576: sorbitol transmembrane transporter activity0.00E+00
5GO:0033759: flavone synthase activity0.00E+00
6GO:2001227: quercitrin binding0.00E+00
7GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
8GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
9GO:0015591: D-ribose transmembrane transporter activity0.00E+00
10GO:0015575: mannitol transmembrane transporter activity0.00E+00
11GO:0102391: decanoate--CoA ligase activity1.69E-04
12GO:0043295: glutathione binding2.21E-04
13GO:0004467: long-chain fatty acid-CoA ligase activity2.21E-04
14GO:0015168: glycerol transmembrane transporter activity2.84E-04
15GO:0009000: selenocysteine lyase activity2.84E-04
16GO:0015245: fatty acid transporter activity2.84E-04
17GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.84E-04
18GO:0004649: poly(ADP-ribose) glycohydrolase activity2.84E-04
19GO:0090353: polygalacturonase inhibitor activity2.84E-04
20GO:0016229: steroid dehydrogenase activity2.84E-04
21GO:0010179: IAA-Ala conjugate hydrolase activity2.84E-04
22GO:0070401: NADP+ binding2.84E-04
23GO:0004348: glucosylceramidase activity2.84E-04
24GO:0010331: gibberellin binding6.25E-04
25GO:0032934: sterol binding6.25E-04
26GO:0050736: O-malonyltransferase activity6.25E-04
27GO:0030247: polysaccharide binding6.98E-04
28GO:0004478: methionine adenosyltransferase activity1.01E-03
29GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.01E-03
30GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.01E-03
31GO:0001046: core promoter sequence-specific DNA binding1.32E-03
32GO:0004364: glutathione transferase activity1.39E-03
33GO:0010178: IAA-amino acid conjugate hydrolase activity1.45E-03
34GO:0008106: alcohol dehydrogenase (NADP+) activity1.45E-03
35GO:0016656: monodehydroascorbate reductase (NADH) activity1.45E-03
36GO:0005354: galactose transmembrane transporter activity1.45E-03
37GO:0035529: NADH pyrophosphatase activity1.45E-03
38GO:0005432: calcium:sodium antiporter activity1.45E-03
39GO:0009916: alternative oxidase activity1.94E-03
40GO:0046923: ER retention sequence binding1.94E-03
41GO:0003995: acyl-CoA dehydrogenase activity1.94E-03
42GO:0050378: UDP-glucuronate 4-epimerase activity1.94E-03
43GO:0004499: N,N-dimethylaniline monooxygenase activity2.07E-03
44GO:0003997: acyl-CoA oxidase activity2.48E-03
45GO:0047631: ADP-ribose diphosphatase activity2.48E-03
46GO:0030151: molybdenum ion binding2.48E-03
47GO:0015145: monosaccharide transmembrane transporter activity2.48E-03
48GO:0018685: alkane 1-monooxygenase activity2.48E-03
49GO:0030276: clathrin binding2.61E-03
50GO:0000210: NAD+ diphosphatase activity3.06E-03
51GO:0050660: flavin adenine dinucleotide binding3.14E-03
52GO:0004144: diacylglycerol O-acyltransferase activity3.68E-03
53GO:0005347: ATP transmembrane transporter activity3.68E-03
54GO:0003978: UDP-glucose 4-epimerase activity3.68E-03
55GO:0004656: procollagen-proline 4-dioxygenase activity3.68E-03
56GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.68E-03
57GO:0015217: ADP transmembrane transporter activity3.68E-03
58GO:0051920: peroxiredoxin activity3.68E-03
59GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.68E-03
60GO:0008237: metallopeptidase activity4.14E-03
61GO:0008320: protein transmembrane transporter activity4.34E-03
62GO:0004620: phospholipase activity4.34E-03
63GO:0102425: myricetin 3-O-glucosyltransferase activity4.34E-03
64GO:0102360: daphnetin 3-O-glucosyltransferase activity4.34E-03
65GO:0051213: dioxygenase activity4.64E-03
66GO:0015491: cation:cation antiporter activity5.03E-03
67GO:0016209: antioxidant activity5.03E-03
68GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity5.03E-03
69GO:0004034: aldose 1-epimerase activity5.03E-03
70GO:0047893: flavonol 3-O-glucosyltransferase activity5.03E-03
71GO:0052747: sinapyl alcohol dehydrogenase activity5.03E-03
72GO:0005544: calcium-dependent phospholipid binding5.03E-03
73GO:0004033: aldo-keto reductase (NADP) activity5.03E-03
74GO:0030170: pyridoxal phosphate binding5.08E-03
75GO:0004806: triglyceride lipase activity5.47E-03
76GO:0008142: oxysterol binding5.77E-03
77GO:0030145: manganese ion binding7.01E-03
78GO:0047617: acyl-CoA hydrolase activity7.35E-03
79GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors7.68E-03
80GO:0004568: chitinase activity8.19E-03
81GO:0005545: 1-phosphatidylinositol binding8.19E-03
82GO:0050661: NADP binding8.76E-03
83GO:0045551: cinnamyl-alcohol dehydrogenase activity9.96E-03
84GO:0031072: heat shock protein binding1.09E-02
85GO:0005198: structural molecule activity1.12E-02
86GO:0005509: calcium ion binding1.23E-02
87GO:0004970: ionotropic glutamate receptor activity1.29E-02
88GO:0005217: intracellular ligand-gated ion channel activity1.29E-02
89GO:0030552: cAMP binding1.29E-02
90GO:0030553: cGMP binding1.29E-02
91GO:0008061: chitin binding1.29E-02
92GO:0003712: transcription cofactor activity1.29E-02
93GO:0051536: iron-sulfur cluster binding1.50E-02
94GO:0003714: transcription corepressor activity1.50E-02
95GO:0005216: ion channel activity1.60E-02
96GO:0035251: UDP-glucosyltransferase activity1.72E-02
97GO:0080043: quercetin 3-O-glucosyltransferase activity1.75E-02
98GO:0080044: quercetin 7-O-glucosyltransferase activity1.75E-02
99GO:0008810: cellulase activity1.95E-02
100GO:0015035: protein disulfide oxidoreductase activity1.97E-02
101GO:0016746: transferase activity, transferring acyl groups1.97E-02
102GO:0042803: protein homodimerization activity2.05E-02
103GO:0004871: signal transducer activity2.05E-02
104GO:0003727: single-stranded RNA binding2.07E-02
105GO:0047134: protein-disulfide reductase activity2.19E-02
106GO:0005249: voltage-gated potassium channel activity2.31E-02
107GO:0030551: cyclic nucleotide binding2.31E-02
108GO:0016758: transferase activity, transferring hexosyl groups2.33E-02
109GO:0004791: thioredoxin-disulfide reductase activity2.57E-02
110GO:0016853: isomerase activity2.57E-02
111GO:0005355: glucose transmembrane transporter activity2.57E-02
112GO:0050662: coenzyme binding2.57E-02
113GO:0004872: receptor activity2.70E-02
114GO:0008565: protein transporter activity2.87E-02
115GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.11E-02
116GO:0015297: antiporter activity3.16E-02
117GO:0016791: phosphatase activity3.25E-02
118GO:0008483: transaminase activity3.39E-02
119GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.39E-02
120GO:0016413: O-acetyltransferase activity3.54E-02
121GO:0008194: UDP-glycosyltransferase activity3.70E-02
122GO:0004721: phosphoprotein phosphatase activity4.13E-02
123GO:0016887: ATPase activity4.32E-02
124GO:0005096: GTPase activator activity4.60E-02
125GO:0004222: metalloendopeptidase activity4.76E-02
126GO:0050897: cobalt ion binding4.93E-02
RankGO TermAdjusted P value
1GO:0030121: AP-1 adaptor complex0.00E+00
2GO:0005794: Golgi apparatus2.46E-05
3GO:0045252: oxoglutarate dehydrogenase complex2.84E-04
4GO:0005886: plasma membrane3.70E-04
5GO:0030658: transport vesicle membrane1.45E-03
6GO:0005905: clathrin-coated pit1.60E-03
7GO:0016021: integral component of membrane2.30E-03
8GO:0005802: trans-Golgi network2.80E-03
9GO:0031965: nuclear membrane3.01E-03
10GO:0005789: endoplasmic reticulum membrane3.40E-03
11GO:0005768: endosome3.61E-03
12GO:0032580: Golgi cisterna membrane3.89E-03
13GO:0005829: cytosol3.93E-03
14GO:0005618: cell wall4.08E-03
15GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.34E-03
16GO:0005788: endoplasmic reticulum lumen4.91E-03
17GO:0030131: clathrin adaptor complex5.03E-03
18GO:0005779: integral component of peroxisomal membrane5.77E-03
19GO:0009505: plant-type cell wall6.92E-03
20GO:0017119: Golgi transport complex8.19E-03
21GO:0046658: anchored component of plasma membrane9.59E-03
22GO:0031012: extracellular matrix1.09E-02
23GO:0070469: respiratory chain1.60E-02
24GO:0005783: endoplasmic reticulum1.68E-02
25GO:0009506: plasmodesma1.84E-02
26GO:0048046: apoplast2.16E-02
27GO:0030136: clathrin-coated vesicle2.19E-02
28GO:0005743: mitochondrial inner membrane2.30E-02
29GO:0019898: extrinsic component of membrane2.70E-02
30GO:0009504: cell plate2.70E-02
31GO:0043231: intracellular membrane-bounded organelle2.84E-02
32GO:0031225: anchored component of membrane2.91E-02
33GO:0016592: mediator complex2.97E-02
34GO:0071944: cell periphery3.11E-02
35GO:0005737: cytoplasm4.62E-02
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Gene type



Gene DE type