co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070979: protein K11-linked ubiquitination	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
7	GO:0045038: protein import into chloroplast thylakoid membrane	1.85E-05
8	GO:0015969: guanosine tetraphosphate metabolic process	1.14E-04
9	GO:1902458: positive regulation of stomatal opening	1.14E-04
10	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.65E-04
11	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.65E-04
12	GO:0046741: transport of virus in host, tissue to tissue	2.65E-04
13	GO:0000256: allantoin catabolic process	2.65E-04
14	GO:0010136: ureide catabolic process	4.38E-04
15	GO:0031145: anaphase-promoting complex-dependent catabolic process	4.38E-04
16	GO:0010623: programmed cell death involved in cell development	4.38E-04
17	GO:0006760: folic acid-containing compound metabolic process	4.38E-04
18	GO:0005977: glycogen metabolic process	4.38E-04
19	GO:0009306: protein secretion	5.99E-04
20	GO:0030071: regulation of mitotic metaphase/anaphase transition	6.29E-04
21	GO:0006145: purine nucleobase catabolic process	6.29E-04
22	GO:0042989: sequestering of actin monomers	6.29E-04
23	GO:0009226: nucleotide-sugar biosynthetic process	6.29E-04
24	GO:0043572: plastid fission	6.29E-04
25	GO:0046836: glycolipid transport	6.29E-04
26	GO:0048442: sepal development	8.35E-04
27	GO:0010508: positive regulation of autophagy	8.35E-04
28	GO:0031122: cytoplasmic microtubule organization	8.35E-04
29	GO:0046656: folic acid biosynthetic process	8.35E-04
30	GO:0010021: amylopectin biosynthetic process	8.35E-04
31	GO:0016123: xanthophyll biosynthetic process	1.05E-03
32	GO:0032876: negative regulation of DNA endoreduplication	1.05E-03
33	GO:0080110: sporopollenin biosynthetic process	1.05E-03
34	GO:0030041: actin filament polymerization	1.05E-03
35	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.29E-03
36	GO:0006555: methionine metabolic process	1.29E-03
37	GO:1901371: regulation of leaf morphogenesis	1.29E-03
38	GO:0010190: cytochrome b6f complex assembly	1.29E-03
39	GO:0042372: phylloquinone biosynthetic process	1.54E-03
40	GO:0009612: response to mechanical stimulus	1.54E-03
41	GO:0010076: maintenance of floral meristem identity	1.54E-03
42	GO:0046654: tetrahydrofolate biosynthetic process	1.54E-03
43	GO:0009395: phospholipid catabolic process	1.81E-03
44	GO:0009645: response to low light intensity stimulus	1.81E-03
45	GO:0051510: regulation of unidimensional cell growth	1.81E-03
46	GO:0006605: protein targeting	2.09E-03
47	GO:0032875: regulation of DNA endoreduplication	2.09E-03
48	GO:2000070: regulation of response to water deprivation	2.09E-03
49	GO:0010206: photosystem II repair	2.70E-03
50	GO:0000373: Group II intron splicing	2.70E-03
51	GO:0042546: cell wall biogenesis	2.85E-03
52	GO:0035999: tetrahydrofolate interconversion	3.02E-03
53	GO:0009098: leucine biosynthetic process	3.02E-03
54	GO:0009086: methionine biosynthetic process	3.02E-03
55	GO:0019538: protein metabolic process	3.36E-03
56	GO:0048441: petal development	3.36E-03
57	GO:0009767: photosynthetic electron transport chain	4.43E-03
58	GO:0048440: carpel development	4.81E-03
59	GO:0010020: chloroplast fission	4.81E-03
60	GO:0010207: photosystem II assembly	4.81E-03
61	GO:0006629: lipid metabolic process	4.85E-03
62	GO:0090351: seedling development	5.21E-03
63	GO:0007010: cytoskeleton organization	6.03E-03
64	GO:0051302: regulation of cell division	6.45E-03
65	GO:0008299: isoprenoid biosynthetic process	6.45E-03
66	GO:0010431: seed maturation	6.89E-03
67	GO:0006730: one-carbon metabolic process	7.34E-03
68	GO:0010089: xylem development	8.26E-03
69	GO:0010584: pollen exine formation	8.26E-03
70	GO:0048443: stamen development	8.26E-03
71	GO:0019722: calcium-mediated signaling	8.26E-03
72	GO:0016117: carotenoid biosynthetic process	8.74E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.74E-03
74	GO:0010087: phloem or xylem histogenesis	9.23E-03
75	GO:0045489: pectin biosynthetic process	9.73E-03
76	GO:0007059: chromosome segregation	1.02E-02
77	GO:0019252: starch biosynthetic process	1.08E-02
78	GO:0000302: response to reactive oxygen species	1.13E-02
79	GO:0010583: response to cyclopentenone	1.18E-02
80	GO:0016032: viral process	1.18E-02
81	GO:0019761: glucosinolate biosynthetic process	1.18E-02
82	GO:0007267: cell-cell signaling	1.35E-02
83	GO:0009658: chloroplast organization	1.40E-02
84	GO:0016126: sterol biosynthetic process	1.46E-02
85	GO:0010027: thylakoid membrane organization	1.46E-02
86	GO:0010029: regulation of seed germination	1.52E-02
87	GO:0010411: xyloglucan metabolic process	1.64E-02
88	GO:0016311: dephosphorylation	1.70E-02
89	GO:0048527: lateral root development	1.96E-02
90	GO:0071555: cell wall organization	2.45E-02
91	GO:0008283: cell proliferation	2.50E-02
92	GO:0009644: response to high light intensity	2.65E-02
93	GO:0006855: drug transmembrane transport	2.79E-02
94	GO:0000165: MAPK cascade	2.87E-02
95	GO:0006364: rRNA processing	3.09E-02
96	GO:0006096: glycolytic process	3.49E-02
97	GO:0005975: carbohydrate metabolic process	4.11E-02
98	GO:0046686: response to cadmium ion	4.25E-02
99	GO:0051301: cell division	4.93E-02
100	GO:0009845: seed germination	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0050613: delta14-sterol reductase activity	0.00E+00
6	GO:0043022: ribosome binding	6.94E-05
7	GO:0004451: isocitrate lyase activity	1.14E-04
8	GO:0008568: microtubule-severing ATPase activity	1.14E-04
9	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.14E-04
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	1.14E-04
11	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.65E-04
12	GO:0102083: 7,8-dihydromonapterin aldolase activity	2.65E-04
13	GO:0048531: beta-1,3-galactosyltransferase activity	2.65E-04
14	GO:0019156: isoamylase activity	2.65E-04
15	GO:0004150: dihydroneopterin aldolase activity	2.65E-04
16	GO:0008728: GTP diphosphokinase activity	2.65E-04
17	GO:0010291: carotene beta-ring hydroxylase activity	2.65E-04
18	GO:0003861: 3-isopropylmalate dehydratase activity	4.38E-04
19	GO:0070402: NADPH binding	4.38E-04
20	GO:0017089: glycolipid transporter activity	6.29E-04
21	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.29E-04
22	GO:0016836: hydro-lyase activity	8.35E-04
23	GO:0051861: glycolipid binding	8.35E-04
24	GO:0080032: methyl jasmonate esterase activity	8.35E-04
25	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	8.35E-04
26	GO:0008374: O-acyltransferase activity	1.05E-03
27	GO:0003785: actin monomer binding	1.05E-03
28	GO:0080030: methyl indole-3-acetate esterase activity	1.29E-03
29	GO:0004556: alpha-amylase activity	1.29E-03
30	GO:0004462: lactoylglutathione lyase activity	1.29E-03
31	GO:0008200: ion channel inhibitor activity	1.29E-03
32	GO:0016491: oxidoreductase activity	2.35E-03
33	GO:0004743: pyruvate kinase activity	3.02E-03
34	GO:0030955: potassium ion binding	3.02E-03
35	GO:0008081: phosphoric diester hydrolase activity	4.43E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.81E-03
37	GO:0005528: FK506 binding	6.03E-03
38	GO:0003824: catalytic activity	7.03E-03
39	GO:0016829: lyase activity	7.06E-03
40	GO:0008080: N-acetyltransferase activity	9.73E-03
41	GO:0016853: isomerase activity	1.02E-02
42	GO:0050662: coenzyme binding	1.02E-02
43	GO:0048038: quinone binding	1.13E-02
44	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.13E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	1.42E-02
46	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.64E-02
47	GO:0008236: serine-type peptidase activity	1.70E-02
48	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.77E-02
49	GO:0015238: drug transmembrane transporter activity	1.83E-02
50	GO:0004222: metalloendopeptidase activity	1.89E-02
51	GO:0005525: GTP binding	1.89E-02
52	GO:0030145: manganese ion binding	1.96E-02
53	GO:0003993: acid phosphatase activity	2.16E-02
54	GO:0004871: signal transducer activity	2.18E-02
55	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.79E-02
56	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.57E-02
57	GO:0016874: ligase activity	3.81E-02
58	GO:0003779: actin binding	3.89E-02
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	5.95E-16
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.08E-04
4	GO:0080085: signal recognition particle, chloroplast targeting	2.65E-04
5	GO:0033281: TAT protein transport complex	4.38E-04
6	GO:0009543: chloroplast thylakoid lumen	8.76E-04
7	GO:0009570: chloroplast stroma	1.53E-03
8	GO:0009535: chloroplast thylakoid membrane	1.64E-03
9	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.39E-03
10	GO:0031977: thylakoid lumen	2.52E-03
11	GO:0005680: anaphase-promoting complex	2.70E-03
12	GO:0009579: thylakoid	2.75E-03
13	GO:0016604: nuclear body	3.02E-03
14	GO:0005938: cell cortex	4.43E-03
15	GO:0030176: integral component of endoplasmic reticulum membrane	5.21E-03
16	GO:0009654: photosystem II oxygen evolving complex	6.45E-03
17	GO:0042651: thylakoid membrane	6.45E-03
18	GO:0015629: actin cytoskeleton	7.79E-03
19	GO:0019898: extrinsic component of membrane	1.08E-02
20	GO:0046658: anchored component of plasma membrane	1.19E-02
21	GO:0030529: intracellular ribonucleoprotein complex	1.46E-02
22	GO:0031969: chloroplast membrane	1.74E-02
23	GO:0019005: SCF ubiquitin ligase complex	1.77E-02
24	GO:0009707: chloroplast outer membrane	1.77E-02
25	GO:0009941: chloroplast envelope	2.14E-02
26	GO:0009706: chloroplast inner membrane	3.98E-02
27	GO:0005623: cell	4.75E-02