co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036258: multivesicular body assembly	0.00E+00
2	GO:0002191: cap-dependent translational initiation	0.00E+00
3	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
4	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	2.77E-16
6	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.02E-07
7	GO:0046686: response to cadmium ion	1.37E-05
8	GO:0006461: protein complex assembly	1.37E-05
9	GO:0030433: ubiquitin-dependent ERAD pathway	1.40E-05
10	GO:0030163: protein catabolic process	4.76E-05
11	GO:0071586: CAAX-box protein processing	9.50E-05
12	GO:1901430: positive regulation of syringal lignin biosynthetic process	9.50E-05
13	GO:0035494: SNARE complex disassembly	9.50E-05
14	GO:0080120: CAAX-box protein maturation	9.50E-05
15	GO:0010372: positive regulation of gibberellin biosynthetic process	2.24E-04
16	GO:0051788: response to misfolded protein	2.24E-04
17	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.24E-04
18	GO:0051603: proteolysis involved in cellular protein catabolic process	3.24E-04
19	GO:0045039: protein import into mitochondrial inner membrane	3.73E-04
20	GO:0010498: proteasomal protein catabolic process	3.73E-04
21	GO:0055074: calcium ion homeostasis	3.73E-04
22	GO:0010359: regulation of anion channel activity	3.73E-04
23	GO:0043617: cellular response to sucrose starvation	3.73E-04
24	GO:0009647: skotomorphogenesis	5.37E-04
25	GO:0010255: glucose mediated signaling pathway	5.37E-04
26	GO:0070676: intralumenal vesicle formation	5.37E-04
27	GO:0001676: long-chain fatty acid metabolic process	5.37E-04
28	GO:0009646: response to absence of light	6.38E-04
29	GO:0046355: mannan catabolic process	7.14E-04
30	GO:0006221: pyrimidine nucleotide biosynthetic process	7.14E-04
31	GO:0051205: protein insertion into membrane	7.14E-04
32	GO:0018279: protein N-linked glycosylation via asparagine	9.02E-04
33	GO:0006564: L-serine biosynthetic process	9.02E-04
34	GO:0005513: detection of calcium ion	9.02E-04
35	GO:0016579: protein deubiquitination	9.80E-04
36	GO:0043248: proteasome assembly	1.10E-03
37	GO:0001731: formation of translation preinitiation complex	1.10E-03
38	GO:0000054: ribosomal subunit export from nucleus	1.31E-03
39	GO:0009612: response to mechanical stimulus	1.31E-03
40	GO:0048528: post-embryonic root development	1.54E-03
41	GO:0000338: protein deneddylation	1.54E-03
42	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.54E-03
43	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.78E-03
44	GO:0048766: root hair initiation	1.78E-03
45	GO:0006402: mRNA catabolic process	1.78E-03
46	GO:0031540: regulation of anthocyanin biosynthetic process	1.78E-03
47	GO:0009932: cell tip growth	2.03E-03
48	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.03E-03
49	GO:0006972: hyperosmotic response	2.03E-03
50	GO:0009651: response to salt stress	2.24E-03
51	GO:0046685: response to arsenic-containing substance	2.29E-03
52	GO:0090332: stomatal closure	2.56E-03
53	GO:0045454: cell redox homeostasis	2.73E-03
54	GO:0046856: phosphatidylinositol dephosphorylation	3.14E-03
55	GO:0048765: root hair cell differentiation	3.14E-03
56	GO:0006820: anion transport	3.44E-03
57	GO:0009553: embryo sac development	3.98E-03
58	GO:0034605: cellular response to heat	4.08E-03
59	GO:0006446: regulation of translational initiation	4.08E-03
60	GO:0010053: root epidermal cell differentiation	4.41E-03
61	GO:0000162: tryptophan biosynthetic process	4.75E-03
62	GO:0034976: response to endoplasmic reticulum stress	4.75E-03
63	GO:0010187: negative regulation of seed germination	5.10E-03
64	GO:0006487: protein N-linked glycosylation	5.10E-03
65	GO:0010431: seed maturation	5.83E-03
66	GO:0080092: regulation of pollen tube growth	6.20E-03
67	GO:0006413: translational initiation	6.58E-03
68	GO:0009411: response to UV	6.58E-03
69	GO:0040007: growth	6.58E-03
70	GO:0009561: megagametogenesis	6.98E-03
71	GO:0009306: protein secretion	6.98E-03
72	GO:0010089: xylem development	6.98E-03
73	GO:0042147: retrograde transport, endosome to Golgi	7.38E-03
74	GO:0006606: protein import into nucleus	7.79E-03
75	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	7.90E-03
76	GO:0010154: fruit development	8.21E-03
77	GO:0008360: regulation of cell shape	8.21E-03
78	GO:0048868: pollen tube development	8.21E-03
79	GO:0061025: membrane fusion	8.63E-03
80	GO:0010183: pollen tube guidance	9.06E-03
81	GO:0048825: cotyledon development	9.06E-03
82	GO:0055072: iron ion homeostasis	9.06E-03
83	GO:0010193: response to ozone	9.51E-03
84	GO:0031047: gene silencing by RNA	9.96E-03
85	GO:0009567: double fertilization forming a zygote and endosperm	1.09E-02
86	GO:0006888: ER to Golgi vesicle-mediated transport	1.38E-02
87	GO:0006950: response to stress	1.38E-02
88	GO:0009793: embryo development ending in seed dormancy	1.50E-02
89	GO:0010311: lateral root formation	1.54E-02
90	GO:0006811: ion transport	1.59E-02
91	GO:0006499: N-terminal protein myristoylation	1.59E-02
92	GO:0010119: regulation of stomatal movement	1.65E-02
93	GO:0006886: intracellular protein transport	1.68E-02
94	GO:0009867: jasmonic acid mediated signaling pathway	1.76E-02
95	GO:0045087: innate immune response	1.76E-02
96	GO:0006631: fatty acid metabolic process	1.99E-02
97	GO:0009408: response to heat	2.01E-02
98	GO:0009640: photomorphogenesis	2.10E-02
99	GO:0009744: response to sucrose	2.10E-02
100	GO:0000209: protein polyubiquitination	2.16E-02
101	GO:0009664: plant-type cell wall organization	2.47E-02
102	GO:0009809: lignin biosynthetic process	2.60E-02
103	GO:0009585: red, far-red light phototransduction	2.60E-02
104	GO:0009736: cytokinin-activated signaling pathway	2.60E-02
105	GO:0009735: response to cytokinin	3.26E-02
106	GO:0018105: peptidyl-serine phosphorylation	3.42E-02
107	GO:0009555: pollen development	3.56E-02
108	GO:0042744: hydrogen peroxide catabolic process	4.30E-02
109	GO:0006457: protein folding	4.59E-02
110	GO:0040008: regulation of growth	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0098808: mRNA cap binding	0.00E+00
3	GO:0004298: threonine-type endopeptidase activity	1.30E-11
4	GO:0008233: peptidase activity	1.00E-07
5	GO:0036402: proteasome-activating ATPase activity	1.02E-07
6	GO:0017025: TBP-class protein binding	5.90E-06
7	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	9.50E-05
8	GO:0004617: phosphoglycerate dehydrogenase activity	2.24E-04
9	GO:0004127: cytidylate kinase activity	2.24E-04
10	GO:0004640: phosphoribosylanthranilate isomerase activity	2.24E-04
11	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.24E-04
12	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.65E-04
13	GO:0005483: soluble NSF attachment protein activity	3.73E-04
14	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	3.73E-04
15	GO:0004848: ureidoglycolate hydrolase activity	3.73E-04
16	GO:0009041: uridylate kinase activity	5.37E-04
17	GO:0019905: syntaxin binding	7.14E-04
18	GO:0016985: mannan endo-1,4-beta-mannosidase activity	7.14E-04
19	GO:0004518: nuclease activity	7.76E-04
20	GO:0005524: ATP binding	7.89E-04
21	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	9.02E-04
22	GO:0016887: ATPase activity	1.18E-03
23	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.21E-03
24	GO:0051920: peroxiredoxin activity	1.31E-03
25	GO:0102391: decanoate--CoA ligase activity	1.31E-03
26	GO:0004656: procollagen-proline 4-dioxygenase activity	1.31E-03
27	GO:0004467: long-chain fatty acid-CoA ligase activity	1.54E-03
28	GO:0015288: porin activity	1.78E-03
29	GO:0016209: antioxidant activity	1.78E-03
30	GO:0003843: 1,3-beta-D-glucan synthase activity	2.03E-03
31	GO:0008308: voltage-gated anion channel activity	2.03E-03
32	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.85E-03
33	GO:0031625: ubiquitin protein ligase binding	3.20E-03
34	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.76E-03
35	GO:0004175: endopeptidase activity	4.08E-03
36	GO:0043130: ubiquitin binding	5.10E-03
37	GO:0031418: L-ascorbic acid binding	5.10E-03
38	GO:0043424: protein histidine kinase binding	5.46E-03
39	GO:0003756: protein disulfide isomerase activity	6.98E-03
40	GO:0047134: protein-disulfide reductase activity	7.38E-03
41	GO:0003743: translation initiation factor activity	8.25E-03
42	GO:0004791: thioredoxin-disulfide reductase activity	8.63E-03
43	GO:0016853: isomerase activity	8.63E-03
44	GO:0004843: thiol-dependent ubiquitin-specific protease activity	9.51E-03
45	GO:0004197: cysteine-type endopeptidase activity	9.96E-03
46	GO:0004601: peroxidase activity	1.09E-02
47	GO:0016597: amino acid binding	1.18E-02
48	GO:0005516: calmodulin binding	1.24E-02
49	GO:0016787: hydrolase activity	1.33E-02
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.33E-02
51	GO:0004683: calmodulin-dependent protein kinase activity	1.38E-02
52	GO:0061630: ubiquitin protein ligase activity	1.43E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.49E-02
54	GO:0004222: metalloendopeptidase activity	1.59E-02
55	GO:0005509: calcium ion binding	1.63E-02
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.76E-02
57	GO:0003924: GTPase activity	2.01E-02
58	GO:0046872: metal ion binding	2.02E-02
59	GO:0035091: phosphatidylinositol binding	2.23E-02
60	GO:0051287: NAD binding	2.41E-02
61	GO:0051082: unfolded protein binding	3.34E-02
62	GO:0008026: ATP-dependent helicase activity	3.49E-02
63	GO:0000166: nucleotide binding	3.56E-02
64	GO:0008565: protein transporter activity	4.46E-02
65	GO:0030246: carbohydrate binding	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.29E-15
2	GO:0005839: proteasome core complex	1.30E-11
3	GO:0031597: cytosolic proteasome complex	1.81E-07
4	GO:0005829: cytosol	2.03E-07
5	GO:0031595: nuclear proteasome complex	2.98E-07
6	GO:0019773: proteasome core complex, alpha-subunit complex	6.83E-07
7	GO:0008540: proteasome regulatory particle, base subcomplex	1.34E-06
8	GO:0005774: vacuolar membrane	3.12E-05
9	GO:0016442: RISC complex	9.50E-05
10	GO:0048471: perinuclear region of cytoplasm	1.41E-04
11	GO:0046861: glyoxysomal membrane	3.73E-04
12	GO:0005773: vacuole	5.05E-04
13	GO:0000813: ESCRT I complex	9.02E-04
14	GO:0008250: oligosaccharyltransferase complex	9.02E-04
15	GO:0030904: retromer complex	1.10E-03
16	GO:0016282: eukaryotic 43S preinitiation complex	1.10E-03
17	GO:0033290: eukaryotic 48S preinitiation complex	1.31E-03
18	GO:0031902: late endosome membrane	1.99E-03
19	GO:0009514: glyoxysome	2.03E-03
20	GO:0000148: 1,3-beta-D-glucan synthase complex	2.03E-03
21	GO:0046930: pore complex	2.03E-03
22	GO:0008180: COP9 signalosome	2.29E-03
23	GO:0010494: cytoplasmic stress granule	2.29E-03
24	GO:0005635: nuclear envelope	3.09E-03
25	GO:0005783: endoplasmic reticulum	3.09E-03
26	GO:0008541: proteasome regulatory particle, lid subcomplex	3.14E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	4.41E-03
28	GO:0005623: cell	5.26E-03
29	GO:0005741: mitochondrial outer membrane	5.83E-03
30	GO:0048046: apoplast	9.00E-03
31	GO:0009504: cell plate	9.06E-03
32	GO:0016592: mediator complex	9.96E-03
33	GO:0005618: cell wall	1.05E-02
34	GO:0016020: membrane	1.07E-02
35	GO:0009506: plasmodesma	1.22E-02
36	GO:0000932: P-body	1.23E-02
37	GO:0005788: endoplasmic reticulum lumen	1.28E-02
38	GO:0005737: cytoplasm	1.48E-02
39	GO:0019005: SCF ubiquitin ligase complex	1.49E-02
40	GO:0005622: intracellular	1.53E-02
41	GO:0005886: plasma membrane	1.82E-02
42	GO:0031201: SNARE complex	1.99E-02
43	GO:0005794: Golgi apparatus	2.30E-02
44	GO:0031966: mitochondrial membrane	2.47E-02
45	GO:0005747: mitochondrial respiratory chain complex I	3.00E-02
46	GO:0005789: endoplasmic reticulum membrane	3.07E-02
47	GO:0022626: cytosolic ribosome	3.41E-02
48	GO:0005730: nucleolus	3.48E-02
49	GO:0005634: nucleus	3.69E-02
50	GO:0005759: mitochondrial matrix	4.61E-02