co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0005996: monosaccharide metabolic process	0.00E+00
9	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
10	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
11	GO:0017038: protein import	0.00E+00
12	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
13	GO:0042820: vitamin B6 catabolic process	0.00E+00
14	GO:0015717: triose phosphate transport	0.00E+00
15	GO:0032544: plastid translation	1.34E-09
16	GO:0015979: photosynthesis	3.58E-08
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.66E-07
18	GO:0009773: photosynthetic electron transport in photosystem I	8.54E-07
19	GO:0009658: chloroplast organization	1.57E-05
20	GO:0019464: glycine decarboxylation via glycine cleavage system	6.35E-05
21	GO:0006546: glycine catabolic process	6.35E-05
22	GO:0006021: inositol biosynthetic process	6.35E-05
23	GO:0010207: photosystem II assembly	7.33E-05
24	GO:0010236: plastoquinone biosynthetic process	1.00E-04
25	GO:0010190: cytochrome b6f complex assembly	1.45E-04
26	GO:0009772: photosynthetic electron transport in photosystem II	2.57E-04
27	GO:0006412: translation	2.99E-04
28	GO:0005991: trehalose metabolic process	3.14E-04
29	GO:0009443: pyridoxal 5'-phosphate salvage	3.14E-04
30	GO:0006659: phosphatidylserine biosynthetic process	3.14E-04
31	GO:0042371: vitamin K biosynthetic process	3.14E-04
32	GO:0009735: response to cytokinin	3.16E-04
33	GO:0010027: thylakoid membrane organization	6.81E-04
34	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.87E-04
35	GO:0018026: peptidyl-lysine monomethylation	6.87E-04
36	GO:0019684: photosynthesis, light reaction	7.62E-04
37	GO:0018119: peptidyl-cysteine S-nitrosylation	7.62E-04
38	GO:0015995: chlorophyll biosynthetic process	8.37E-04
39	GO:0035436: triose phosphate transmembrane transport	1.11E-03
40	GO:0006810: transport	1.42E-03
41	GO:0006166: purine ribonucleoside salvage	1.60E-03
42	GO:0006020: inositol metabolic process	1.60E-03
43	GO:0071484: cellular response to light intensity	1.60E-03
44	GO:0051085: chaperone mediated protein folding requiring cofactor	1.60E-03
45	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.60E-03
46	GO:0010731: protein glutathionylation	1.60E-03
47	GO:0006168: adenine salvage	1.60E-03
48	GO:0006986: response to unfolded protein	1.60E-03
49	GO:0009768: photosynthesis, light harvesting in photosystem I	1.68E-03
50	GO:0010114: response to red light	1.76E-03
51	GO:0061077: chaperone-mediated protein folding	1.84E-03
52	GO:0010109: regulation of photosynthesis	2.14E-03
53	GO:0019676: ammonia assimilation cycle	2.14E-03
54	GO:0006109: regulation of carbohydrate metabolic process	2.14E-03
55	GO:0045727: positive regulation of translation	2.14E-03
56	GO:0015994: chlorophyll metabolic process	2.14E-03
57	GO:0022622: root system development	2.14E-03
58	GO:0010107: potassium ion import	2.14E-03
59	GO:0015713: phosphoglycerate transport	2.14E-03
60	GO:0006542: glutamine biosynthetic process	2.14E-03
61	GO:0044209: AMP salvage	2.74E-03
62	GO:0016120: carotene biosynthetic process	2.74E-03
63	GO:0046907: intracellular transport	2.74E-03
64	GO:0098719: sodium ion import across plasma membrane	2.74E-03
65	GO:0006564: L-serine biosynthetic process	2.74E-03
66	GO:0042549: photosystem II stabilization	3.38E-03
67	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.38E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.38E-03
69	GO:1902456: regulation of stomatal opening	3.38E-03
70	GO:0000741: karyogamy	3.38E-03
71	GO:0009228: thiamine biosynthetic process	3.38E-03
72	GO:0046855: inositol phosphate dephosphorylation	3.38E-03
73	GO:0009643: photosynthetic acclimation	3.38E-03
74	GO:0009955: adaxial/abaxial pattern specification	4.06E-03
75	GO:0042026: protein refolding	4.06E-03
76	GO:0042372: phylloquinone biosynthetic process	4.06E-03
77	GO:1901259: chloroplast rRNA processing	4.06E-03
78	GO:0006458: 'de novo' protein folding	4.06E-03
79	GO:0010189: vitamin E biosynthetic process	4.06E-03
80	GO:0032880: regulation of protein localization	4.80E-03
81	GO:0048564: photosystem I assembly	5.57E-03
82	GO:0070413: trehalose metabolism in response to stress	5.57E-03
83	GO:0006605: protein targeting	5.57E-03
84	GO:0055075: potassium ion homeostasis	5.57E-03
85	GO:0071482: cellular response to light stimulus	6.39E-03
86	GO:0009657: plastid organization	6.39E-03
87	GO:0009817: defense response to fungus, incompatible interaction	7.02E-03
88	GO:0010206: photosystem II repair	7.24E-03
89	GO:0090333: regulation of stomatal closure	7.24E-03
90	GO:0006783: heme biosynthetic process	7.24E-03
91	GO:0032259: methylation	7.39E-03
92	GO:0051453: regulation of intracellular pH	8.14E-03
93	GO:0009641: shade avoidance	9.07E-03
94	GO:0006949: syncytium formation	9.07E-03
95	GO:0006782: protoporphyrinogen IX biosynthetic process	9.07E-03
96	GO:0009089: lysine biosynthetic process via diaminopimelate	1.00E-02
97	GO:0006415: translational termination	1.00E-02
98	GO:0043085: positive regulation of catalytic activity	1.00E-02
99	GO:0000272: polysaccharide catabolic process	1.00E-02
100	GO:0009409: response to cold	1.07E-02
101	GO:0006790: sulfur compound metabolic process	1.11E-02
102	GO:0005983: starch catabolic process	1.11E-02
103	GO:0016024: CDP-diacylglycerol biosynthetic process	1.11E-02
104	GO:0009767: photosynthetic electron transport chain	1.21E-02
105	GO:2000012: regulation of auxin polar transport	1.21E-02
106	GO:0055114: oxidation-reduction process	1.30E-02
107	GO:0010143: cutin biosynthetic process	1.32E-02
108	GO:0019253: reductive pentose-phosphate cycle	1.32E-02
109	GO:0046854: phosphatidylinositol phosphorylation	1.43E-02
110	GO:0042254: ribosome biogenesis	1.45E-02
111	GO:0006364: rRNA processing	1.55E-02
112	GO:0005992: trehalose biosynthetic process	1.66E-02
113	GO:0006418: tRNA aminoacylation for protein translation	1.78E-02
114	GO:0007017: microtubule-based process	1.78E-02
115	GO:0019915: lipid storage	1.91E-02
116	GO:0030245: cellulose catabolic process	2.03E-02
117	GO:0016226: iron-sulfur cluster assembly	2.03E-02
118	GO:0006730: one-carbon metabolic process	2.03E-02
119	GO:0009686: gibberellin biosynthetic process	2.16E-02
120	GO:0009561: megagametogenesis	2.29E-02
121	GO:0009742: brassinosteroid mediated signaling pathway	2.35E-02
122	GO:0016117: carotenoid biosynthetic process	2.43E-02
123	GO:0051028: mRNA transport	2.43E-02
124	GO:0008284: positive regulation of cell proliferation	2.43E-02
125	GO:0042631: cellular response to water deprivation	2.57E-02
126	GO:0000413: protein peptidyl-prolyl isomerization	2.57E-02
127	GO:0010268: brassinosteroid homeostasis	2.71E-02
128	GO:0009958: positive gravitropism	2.71E-02
129	GO:0006885: regulation of pH	2.71E-02
130	GO:0006662: glycerol ether metabolic process	2.71E-02
131	GO:0010197: polar nucleus fusion	2.71E-02
132	GO:0010182: sugar mediated signaling pathway	2.71E-02
133	GO:0006457: protein folding	2.75E-02
134	GO:0006814: sodium ion transport	2.85E-02
135	GO:0009646: response to absence of light	2.85E-02
136	GO:0048544: recognition of pollen	2.85E-02
137	GO:0009791: post-embryonic development	3.00E-02
138	GO:0019252: starch biosynthetic process	3.00E-02
139	GO:0008654: phospholipid biosynthetic process	3.00E-02
140	GO:0016132: brassinosteroid biosynthetic process	3.15E-02
141	GO:0009790: embryo development	3.24E-02
142	GO:0032502: developmental process	3.30E-02
143	GO:0010090: trichome morphogenesis	3.45E-02
144	GO:0016125: sterol metabolic process	3.61E-02
145	GO:0009828: plant-type cell wall loosening	3.61E-02
146	GO:0040008: regulation of growth	3.66E-02
147	GO:0007623: circadian rhythm	3.83E-02
148	GO:0046686: response to cadmium ion	3.83E-02
149	GO:0009627: systemic acquired resistance	4.42E-02
150	GO:0042128: nitrate assimilation	4.42E-02
151	GO:0006974: cellular response to DNA damage stimulus	4.42E-02
152	GO:0048481: plant ovule development	4.93E-02
153	GO:0018298: protein-chromophore linkage	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0010303: limit dextrinase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0051060: pullulanase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
10	GO:0019843: rRNA binding	7.23E-08
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.81E-07
12	GO:0003735: structural constituent of ribosome	2.16E-05
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.55E-05
14	GO:0031072: heat shock protein binding	6.06E-05
15	GO:0051082: unfolded protein binding	1.02E-04
16	GO:0005528: FK506 binding	1.21E-04
17	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	3.14E-04
18	GO:0051777: ent-kaurenoate oxidase activity	3.14E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	3.14E-04
20	GO:0009374: biotin binding	3.14E-04
21	GO:0005080: protein kinase C binding	3.14E-04
22	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.14E-04
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-04
24	GO:0048038: quinone binding	4.24E-04
25	GO:0047746: chlorophyllase activity	6.87E-04
26	GO:0004618: phosphoglycerate kinase activity	6.87E-04
27	GO:0010297: heteropolysaccharide binding	6.87E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	6.87E-04
29	GO:0004047: aminomethyltransferase activity	6.87E-04
30	GO:0052832: inositol monophosphate 3-phosphatase activity	6.87E-04
31	GO:0008934: inositol monophosphate 1-phosphatase activity	6.87E-04
32	GO:0052833: inositol monophosphate 4-phosphatase activity	6.87E-04
33	GO:0004512: inositol-3-phosphate synthase activity	6.87E-04
34	GO:0016630: protochlorophyllide reductase activity	6.87E-04
35	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.87E-04
36	GO:0071917: triose-phosphate transmembrane transporter activity	1.11E-03
37	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.11E-03
38	GO:0002161: aminoacyl-tRNA editing activity	1.11E-03
39	GO:0004148: dihydrolipoyl dehydrogenase activity	1.11E-03
40	GO:0004751: ribose-5-phosphate isomerase activity	1.11E-03
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.11E-03
42	GO:0070402: NADPH binding	1.11E-03
43	GO:0031409: pigment binding	1.37E-03
44	GO:0008097: 5S rRNA binding	1.60E-03
45	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.60E-03
46	GO:0003999: adenine phosphoribosyltransferase activity	1.60E-03
47	GO:0016851: magnesium chelatase activity	1.60E-03
48	GO:0016149: translation release factor activity, codon specific	1.60E-03
49	GO:0043023: ribosomal large subunit binding	1.60E-03
50	GO:0045430: chalcone isomerase activity	2.14E-03
51	GO:0015120: phosphoglycerate transmembrane transporter activity	2.14E-03
52	GO:0004659: prenyltransferase activity	2.14E-03
53	GO:0016279: protein-lysine N-methyltransferase activity	2.14E-03
54	GO:0004356: glutamate-ammonia ligase activity	2.74E-03
55	GO:0003989: acetyl-CoA carboxylase activity	2.74E-03
56	GO:0003959: NADPH dehydrogenase activity	2.74E-03
57	GO:0008168: methyltransferase activity	2.97E-03
58	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.38E-03
59	GO:0004556: alpha-amylase activity	3.38E-03
60	GO:0015081: sodium ion transmembrane transporter activity	3.38E-03
61	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.38E-03
62	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.06E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.06E-03
64	GO:0016791: phosphatase activity	4.50E-03
65	GO:0005509: calcium ion binding	5.07E-03
66	GO:0004033: aldo-keto reductase (NADP) activity	5.57E-03
67	GO:0016168: chlorophyll binding	5.68E-03
68	GO:0003824: catalytic activity	7.13E-03
69	GO:0003747: translation release factor activity	7.24E-03
70	GO:0008047: enzyme activator activity	9.07E-03
71	GO:0044183: protein binding involved in protein folding	1.00E-02
72	GO:0047372: acylglycerol lipase activity	1.00E-02
73	GO:0015386: potassium:proton antiporter activity	1.00E-02
74	GO:0016491: oxidoreductase activity	1.02E-02
75	GO:0008378: galactosyltransferase activity	1.11E-02
76	GO:0000049: tRNA binding	1.11E-02
77	GO:0004089: carbonate dehydratase activity	1.21E-02
78	GO:0003725: double-stranded RNA binding	1.21E-02
79	GO:0051537: 2 iron, 2 sulfur cluster binding	1.25E-02
80	GO:0008083: growth factor activity	1.32E-02
81	GO:0008266: poly(U) RNA binding	1.32E-02
82	GO:0051536: iron-sulfur cluster binding	1.66E-02
83	GO:0004857: enzyme inhibitor activity	1.66E-02
84	GO:0051087: chaperone binding	1.78E-02
85	GO:0043424: protein histidine kinase binding	1.78E-02
86	GO:0030570: pectate lyase activity	2.16E-02
87	GO:0008810: cellulase activity	2.16E-02
88	GO:0003727: single-stranded RNA binding	2.29E-02
89	GO:0004812: aminoacyl-tRNA ligase activity	2.43E-02
90	GO:0047134: protein-disulfide reductase activity	2.43E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	2.85E-02
92	GO:0050662: coenzyme binding	2.85E-02
93	GO:0009055: electron carrier activity	3.30E-02
94	GO:0015385: sodium:proton antiporter activity	3.45E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.45E-02
96	GO:0015297: antiporter activity	3.66E-02
97	GO:0008483: transaminase activity	3.77E-02
98	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.77E-02
99	GO:0008237: metallopeptidase activity	3.77E-02
100	GO:0005200: structural constituent of cytoskeleton	3.77E-02
101	GO:0016597: amino acid binding	3.92E-02
102	GO:0004721: phosphoprotein phosphatase activity	4.59E-02
103	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	2.34E-59
3	GO:0009570: chloroplast stroma	1.50E-38
4	GO:0009535: chloroplast thylakoid membrane	2.20E-35
5	GO:0009579: thylakoid	1.55E-29
6	GO:0009941: chloroplast envelope	5.87E-26
7	GO:0009534: chloroplast thylakoid	4.29E-21
8	GO:0009543: chloroplast thylakoid lumen	1.70E-16
9	GO:0031977: thylakoid lumen	9.85E-13
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.66E-11
11	GO:0009654: photosystem II oxygen evolving complex	2.87E-11
12	GO:0019898: extrinsic component of membrane	2.73E-08
13	GO:0005840: ribosome	9.59E-07
14	GO:0030095: chloroplast photosystem II	2.15E-06
15	GO:0031969: chloroplast membrane	3.03E-05
16	GO:0005960: glycine cleavage complex	3.55E-05
17	GO:0010319: stromule	5.23E-05
18	GO:0010287: plastoglobule	1.46E-04
19	GO:0048046: apoplast	2.42E-04
20	GO:0009547: plastid ribosome	3.14E-04
21	GO:0009344: nitrite reductase complex [NAD(P)H]	3.14E-04
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.87E-04
23	GO:0016020: membrane	7.47E-04
24	GO:0010007: magnesium chelatase complex	1.11E-03
25	GO:0009317: acetyl-CoA carboxylase complex	1.11E-03
26	GO:0030076: light-harvesting complex	1.24E-03
27	GO:0009706: chloroplast inner membrane	4.03E-03
28	GO:0009840: chloroplastic endopeptidase Clp complex	4.06E-03
29	GO:0009533: chloroplast stromal thylakoid	4.80E-03
30	GO:0009539: photosystem II reaction center	6.39E-03
31	GO:0005763: mitochondrial small ribosomal subunit	7.24E-03
32	GO:0045298: tubulin complex	7.24E-03
33	GO:0000311: plastid large ribosomal subunit	1.11E-02
34	GO:0009508: plastid chromosome	1.21E-02
35	GO:0000312: plastid small ribosomal subunit	1.32E-02
36	GO:0042651: thylakoid membrane	1.78E-02
37	GO:0015935: small ribosomal subunit	1.91E-02
38	GO:0009532: plastid stroma	1.91E-02
39	GO:0009536: plastid	2.58E-02
40	GO:0009522: photosystem I	2.85E-02
41	GO:0009523: photosystem II	3.00E-02
42	GO:0005618: cell wall	3.47E-02
43	GO:0009295: nucleoid	3.77E-02
44	GO:0005615: extracellular space	4.28E-02
45	GO:0009707: chloroplast outer membrane	4.93E-02
46	GO:0005643: nuclear pore	4.93E-02