co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0009734: auxin-activated signaling pathway	6.66E-06
3	GO:0046620: regulation of organ growth	9.59E-06
4	GO:0009926: auxin polar transport	2.60E-05
5	GO:0010239: chloroplast mRNA processing	3.75E-05
6	GO:0009733: response to auxin	5.89E-05
7	GO:0006438: valyl-tRNA aminoacylation	3.24E-04
8	GO:0019478: D-amino acid catabolic process	3.24E-04
9	GO:0043686: co-translational protein modification	3.24E-04
10	GO:0051013: microtubule severing	3.24E-04
11	GO:0034757: negative regulation of iron ion transport	3.24E-04
12	GO:0006650: glycerophospholipid metabolic process	7.07E-04
13	GO:0010271: regulation of chlorophyll catabolic process	7.07E-04
14	GO:0009786: regulation of asymmetric cell division	7.07E-04
15	GO:0031648: protein destabilization	7.07E-04
16	GO:0005983: starch catabolic process	9.08E-04
17	GO:0045037: protein import into chloroplast stroma	9.08E-04
18	GO:0010582: floral meristem determinacy	9.08E-04
19	GO:0080117: secondary growth	1.15E-03
20	GO:0051604: protein maturation	1.15E-03
21	GO:0071398: cellular response to fatty acid	1.15E-03
22	GO:0030029: actin filament-based process	1.15E-03
23	GO:0045910: negative regulation of DNA recombination	1.15E-03
24	GO:0090506: axillary shoot meristem initiation	1.15E-03
25	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.15E-03
26	GO:0009825: multidimensional cell growth	1.29E-03
27	GO:0040008: regulation of growth	1.61E-03
28	GO:2000904: regulation of starch metabolic process	1.65E-03
29	GO:0051513: regulation of monopolar cell growth	1.65E-03
30	GO:0051639: actin filament network formation	1.65E-03
31	GO:0044211: CTP salvage	1.65E-03
32	GO:0044206: UMP salvage	2.21E-03
33	GO:0009956: radial pattern formation	2.21E-03
34	GO:0051764: actin crosslink formation	2.21E-03
35	GO:0009686: gibberellin biosynthetic process	2.30E-03
36	GO:0009696: salicylic acid metabolic process	2.82E-03
37	GO:0045487: gibberellin catabolic process	2.82E-03
38	GO:0016131: brassinosteroid metabolic process	2.82E-03
39	GO:0048497: maintenance of floral organ identity	2.82E-03
40	GO:0031365: N-terminal protein amino acid modification	2.82E-03
41	GO:0010158: abaxial cell fate specification	2.82E-03
42	GO:0006206: pyrimidine nucleobase metabolic process	3.49E-03
43	GO:0009913: epidermal cell differentiation	3.49E-03
44	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.49E-03
45	GO:1902456: regulation of stomatal opening	3.49E-03
46	GO:0048831: regulation of shoot system development	3.49E-03
47	GO:0003006: developmental process involved in reproduction	3.49E-03
48	GO:0016554: cytidine to uridine editing	3.49E-03
49	GO:0010583: response to cyclopentenone	4.16E-03
50	GO:1901259: chloroplast rRNA processing	4.20E-03
51	GO:0009942: longitudinal axis specification	4.20E-03
52	GO:0048509: regulation of meristem development	4.20E-03
53	GO:0030488: tRNA methylation	4.20E-03
54	GO:0009648: photoperiodism	4.20E-03
55	GO:0010050: vegetative phase change	4.95E-03
56	GO:0010098: suspensor development	4.95E-03
57	GO:0006353: DNA-templated transcription, termination	5.76E-03
58	GO:0009850: auxin metabolic process	5.76E-03
59	GO:0009231: riboflavin biosynthetic process	5.76E-03
60	GO:0045892: negative regulation of transcription, DNA-templated	6.32E-03
61	GO:0007186: G-protein coupled receptor signaling pathway	6.60E-03
62	GO:0009657: plastid organization	6.60E-03
63	GO:0007389: pattern specification process	6.60E-03
64	GO:0071482: cellular response to light stimulus	6.60E-03
65	GO:0048507: meristem development	7.48E-03
66	GO:0051865: protein autoubiquitination	7.48E-03
67	GO:0000373: Group II intron splicing	7.48E-03
68	GO:0009832: plant-type cell wall biogenesis	7.73E-03
69	GO:0000160: phosphorelay signal transduction system	7.73E-03
70	GO:1900865: chloroplast RNA modification	8.41E-03
71	GO:0042761: very long-chain fatty acid biosynthetic process	8.41E-03
72	GO:0016571: histone methylation	8.41E-03
73	GO:0016573: histone acetylation	8.41E-03
74	GO:0005982: starch metabolic process	8.41E-03
75	GO:0006779: porphyrin-containing compound biosynthetic process	8.41E-03
76	GO:0006782: protoporphyrinogen IX biosynthetic process	9.37E-03
77	GO:0006535: cysteine biosynthetic process from serine	9.37E-03
78	GO:0048829: root cap development	9.37E-03
79	GO:0009641: shade avoidance	9.37E-03
80	GO:0006298: mismatch repair	9.37E-03
81	GO:0010192: mucilage biosynthetic process	9.37E-03
82	GO:0009750: response to fructose	1.04E-02
83	GO:0009744: response to sucrose	1.21E-02
84	GO:0010102: lateral root morphogenesis	1.25E-02
85	GO:0009691: cytokinin biosynthetic process	1.25E-02
86	GO:0009725: response to hormone	1.25E-02
87	GO:0042546: cell wall biogenesis	1.26E-02
88	GO:0009636: response to toxic substance	1.36E-02
89	GO:0009965: leaf morphogenesis	1.36E-02
90	GO:0010020: chloroplast fission	1.36E-02
91	GO:0009933: meristem structural organization	1.36E-02
92	GO:0010207: photosystem II assembly	1.36E-02
93	GO:0010223: secondary shoot formation	1.36E-02
94	GO:0010540: basipetal auxin transport	1.36E-02
95	GO:0009266: response to temperature stimulus	1.36E-02
96	GO:0048467: gynoecium development	1.36E-02
97	GO:0009658: chloroplast organization	1.50E-02
98	GO:0010025: wax biosynthetic process	1.60E-02
99	GO:0006863: purine nucleobase transport	1.60E-02
100	GO:0009833: plant-type primary cell wall biogenesis	1.60E-02
101	GO:0009736: cytokinin-activated signaling pathway	1.63E-02
102	GO:0006338: chromatin remodeling	1.72E-02
103	GO:0051017: actin filament bundle assembly	1.72E-02
104	GO:0019344: cysteine biosynthetic process	1.72E-02
105	GO:0043622: cortical microtubule organization	1.84E-02
106	GO:0006418: tRNA aminoacylation for protein translation	1.84E-02
107	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.05E-02
108	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.10E-02
109	GO:0009693: ethylene biosynthetic process	2.23E-02
110	GO:0071215: cellular response to abscisic acid stimulus	2.23E-02
111	GO:0010082: regulation of root meristem growth	2.23E-02
112	GO:0001944: vasculature development	2.23E-02
113	GO:0006284: base-excision repair	2.37E-02
114	GO:0010091: trichome branching	2.37E-02
115	GO:0070417: cellular response to cold	2.51E-02
116	GO:0016117: carotenoid biosynthetic process	2.51E-02
117	GO:0000226: microtubule cytoskeleton organization	2.65E-02
118	GO:0000271: polysaccharide biosynthetic process	2.65E-02
119	GO:0008033: tRNA processing	2.65E-02
120	GO:0010087: phloem or xylem histogenesis	2.65E-02
121	GO:0010118: stomatal movement	2.65E-02
122	GO:0045489: pectin biosynthetic process	2.80E-02
123	GO:0010305: leaf vascular tissue pattern formation	2.80E-02
124	GO:0009958: positive gravitropism	2.80E-02
125	GO:0010182: sugar mediated signaling pathway	2.80E-02
126	GO:0009741: response to brassinosteroid	2.80E-02
127	GO:0010268: brassinosteroid homeostasis	2.80E-02
128	GO:0048544: recognition of pollen	2.95E-02
129	GO:0048825: cotyledon development	3.10E-02
130	GO:0009749: response to glucose	3.10E-02
131	GO:0008654: phospholipid biosynthetic process	3.10E-02
132	GO:0009845: seed germination	3.15E-02
133	GO:0071554: cell wall organization or biogenesis	3.25E-02
134	GO:0000302: response to reactive oxygen species	3.25E-02
135	GO:0032502: developmental process	3.41E-02
136	GO:0016310: phosphorylation	3.60E-02
137	GO:0010252: auxin homeostasis	3.73E-02
138	GO:0009639: response to red or far red light	3.73E-02
139	GO:0051607: defense response to virus	4.06E-02
140	GO:0010027: thylakoid membrane organization	4.23E-02
141	GO:0010029: regulation of seed germination	4.40E-02
142	GO:0009627: systemic acquired resistance	4.57E-02
143	GO:0015995: chlorophyll biosynthetic process	4.75E-02
144	GO:0010411: xyloglucan metabolic process	4.75E-02
145	GO:0048573: photoperiodism, flowering	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0008805: carbon-monoxide oxygenase activity	4.77E-06
4	GO:0001872: (1->3)-beta-D-glucan binding	3.75E-05
5	GO:0043621: protein self-association	3.10E-04
6	GO:0042586: peptide deformylase activity	3.24E-04
7	GO:0052381: tRNA dimethylallyltransferase activity	3.24E-04
8	GO:0008568: microtubule-severing ATPase activity	3.24E-04
9	GO:0019203: carbohydrate phosphatase activity	3.24E-04
10	GO:0008395: steroid hydroxylase activity	3.24E-04
11	GO:0004832: valine-tRNA ligase activity	3.24E-04
12	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.24E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.24E-04
14	GO:0005227: calcium activated cation channel activity	3.24E-04
15	GO:0050736: O-malonyltransferase activity	7.07E-04
16	GO:0009884: cytokinin receptor activity	7.07E-04
17	GO:0019156: isoamylase activity	7.07E-04
18	GO:0050017: L-3-cyanoalanine synthase activity	7.07E-04
19	GO:0045543: gibberellin 2-beta-dioxygenase activity	7.07E-04
20	GO:0030247: polysaccharide binding	8.87E-04
21	GO:0005034: osmosensor activity	1.15E-03
22	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.15E-03
23	GO:0080031: methyl salicylate esterase activity	1.65E-03
24	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.65E-03
25	GO:0019199: transmembrane receptor protein kinase activity	2.21E-03
26	GO:0004845: uracil phosphoribosyltransferase activity	2.21E-03
27	GO:0008725: DNA-3-methyladenine glycosylase activity	2.82E-03
28	GO:0008374: O-acyltransferase activity	2.82E-03
29	GO:0004556: alpha-amylase activity	3.49E-03
30	GO:0004462: lactoylglutathione lyase activity	3.49E-03
31	GO:0030983: mismatched DNA binding	3.49E-03
32	GO:0080030: methyl indole-3-acetate esterase activity	3.49E-03
33	GO:0004709: MAP kinase kinase kinase activity	3.49E-03
34	GO:0016832: aldehyde-lyase activity	4.20E-03
35	GO:0004849: uridine kinase activity	4.20E-03
36	GO:0019900: kinase binding	4.20E-03
37	GO:0004124: cysteine synthase activity	4.20E-03
38	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.48E-03
39	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.48E-03
40	GO:0016740: transferase activity	8.25E-03
41	GO:0009672: auxin:proton symporter activity	8.41E-03
42	GO:0004673: protein histidine kinase activity	9.37E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.46E-03
44	GO:0004519: endonuclease activity	9.63E-03
45	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.04E-02
46	GO:0010329: auxin efflux transmembrane transporter activity	1.25E-02
47	GO:0003725: double-stranded RNA binding	1.25E-02
48	GO:0000155: phosphorelay sensor kinase activity	1.25E-02
49	GO:0009982: pseudouridine synthase activity	1.25E-02
50	GO:0008061: chitin binding	1.48E-02
51	GO:0003712: transcription cofactor activity	1.48E-02
52	GO:0016301: kinase activity	1.56E-02
53	GO:0008134: transcription factor binding	1.72E-02
54	GO:0051536: iron-sulfur cluster binding	1.72E-02
55	GO:0031418: L-ascorbic acid binding	1.72E-02
56	GO:0051087: chaperone binding	1.84E-02
57	GO:0043424: protein histidine kinase binding	1.84E-02
58	GO:0005345: purine nucleobase transmembrane transporter activity	1.84E-02
59	GO:0033612: receptor serine/threonine kinase binding	1.97E-02
60	GO:0003964: RNA-directed DNA polymerase activity	1.97E-02
61	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.10E-02
62	GO:0030570: pectate lyase activity	2.23E-02
63	GO:0016760: cellulose synthase (UDP-forming) activity	2.23E-02
64	GO:0004812: aminoacyl-tRNA ligase activity	2.51E-02
65	GO:0042803: protein homodimerization activity	2.62E-02
66	GO:0004871: signal transducer activity	2.62E-02
67	GO:0010181: FMN binding	2.95E-02
68	GO:0016853: isomerase activity	2.95E-02
69	GO:0004872: receptor activity	3.10E-02
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.25E-02
71	GO:0004518: nuclease activity	3.41E-02
72	GO:0003723: RNA binding	3.47E-02
73	GO:0008565: protein transporter activity	3.48E-02
74	GO:0000156: phosphorelay response regulator activity	3.57E-02
75	GO:0051015: actin filament binding	3.57E-02
76	GO:0016759: cellulose synthase activity	3.73E-02
77	GO:0003684: damaged DNA binding	3.73E-02
78	GO:0005200: structural constituent of cytoskeleton	3.89E-02
79	GO:0016413: O-acetyltransferase activity	4.06E-02
80	GO:0005515: protein binding	4.36E-02
81	GO:0004721: phosphoprotein phosphatase activity	4.75E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.75E-02
83	GO:0008236: serine-type peptidase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0031224: intrinsic component of membrane	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0035452: extrinsic component of plastid membrane	0.00E+00
5	GO:0009507: chloroplast	1.05E-05
6	GO:0009569: chloroplast starch grain	7.07E-04
7	GO:0009513: etioplast	7.07E-04
8	GO:0009509: chromoplast	1.15E-03
9	GO:0030139: endocytic vesicle	1.15E-03
10	GO:0032432: actin filament bundle	1.65E-03
11	GO:0032585: multivesicular body membrane	1.65E-03
12	GO:0009570: chloroplast stroma	1.88E-03
13	GO:0009526: plastid envelope	2.21E-03
14	GO:0055035: plastid thylakoid membrane	2.82E-03
15	GO:0009941: chloroplast envelope	4.24E-03
16	GO:0009986: cell surface	4.95E-03
17	GO:0009501: amyloplast	5.76E-03
18	GO:0005886: plasma membrane	6.54E-03
19	GO:0046930: pore complex	6.60E-03
20	GO:0005884: actin filament	1.04E-02
21	GO:0031977: thylakoid lumen	1.11E-02
22	GO:0046658: anchored component of plasma membrane	1.23E-02
23	GO:0030095: chloroplast photosystem II	1.36E-02
24	GO:0005875: microtubule associated complex	1.60E-02
25	GO:0009654: photosystem II oxygen evolving complex	1.84E-02
26	GO:0009706: chloroplast inner membrane	2.32E-02
27	GO:0005623: cell	2.99E-02
28	GO:0009504: cell plate	3.10E-02
29	GO:0031965: nuclear membrane	3.10E-02
30	GO:0019898: extrinsic component of membrane	3.10E-02
31	GO:0016592: mediator complex	3.41E-02
32	GO:0010319: stromule	3.89E-02