Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:0015882: L-ascorbic acid transport0.00E+00
4GO:1905177: tracheary element differentiation0.00E+00
5GO:0008298: intracellular mRNA localization0.00E+00
6GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
7GO:0007172: signal complex assembly0.00E+00
8GO:0071474: cellular hyperosmotic response0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0043488: regulation of mRNA stability0.00E+00
11GO:0010081: regulation of inflorescence meristem growth0.00E+00
12GO:0071000: response to magnetism0.00E+00
13GO:0090279: regulation of calcium ion import0.00E+00
14GO:0009583: detection of light stimulus0.00E+00
15GO:0007037: vacuolar phosphate transport0.00E+00
16GO:0042820: vitamin B6 catabolic process0.00E+00
17GO:0042821: pyridoxal biosynthetic process0.00E+00
18GO:0045038: protein import into chloroplast thylakoid membrane9.57E-07
19GO:1902326: positive regulation of chlorophyll biosynthetic process4.08E-06
20GO:0009658: chloroplast organization1.26E-05
21GO:0016556: mRNA modification3.26E-05
22GO:2001141: regulation of RNA biosynthetic process3.26E-05
23GO:0010239: chloroplast mRNA processing3.26E-05
24GO:0043266: regulation of potassium ion transport2.99E-04
25GO:0010080: regulation of floral meristem growth2.99E-04
26GO:0000481: maturation of 5S rRNA2.99E-04
27GO:0051775: response to redox state2.99E-04
28GO:0072387: flavin adenine dinucleotide metabolic process2.99E-04
29GO:2000021: regulation of ion homeostasis2.99E-04
30GO:0070574: cadmium ion transmembrane transport2.99E-04
31GO:0051247: positive regulation of protein metabolic process2.99E-04
32GO:1902458: positive regulation of stomatal opening2.99E-04
33GO:0010028: xanthophyll cycle2.99E-04
34GO:0034337: RNA folding2.99E-04
35GO:2000905: negative regulation of starch metabolic process2.99E-04
36GO:0000305: response to oxygen radical2.99E-04
37GO:0006419: alanyl-tRNA aminoacylation2.99E-04
38GO:0009443: pyridoxal 5'-phosphate salvage2.99E-04
39GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.99E-04
40GO:0015969: guanosine tetraphosphate metabolic process2.99E-04
41GO:0031426: polycistronic mRNA processing2.99E-04
42GO:0071482: cellular response to light stimulus3.71E-04
43GO:0099402: plant organ development6.55E-04
44GO:1903426: regulation of reactive oxygen species biosynthetic process6.55E-04
45GO:0010024: phytochromobilin biosynthetic process6.55E-04
46GO:0051262: protein tetramerization6.55E-04
47GO:0010343: singlet oxygen-mediated programmed cell death6.55E-04
48GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole6.55E-04
49GO:1901529: positive regulation of anion channel activity6.55E-04
50GO:1900871: chloroplast mRNA modification6.55E-04
51GO:0060359: response to ammonium ion6.55E-04
52GO:0048255: mRNA stabilization6.55E-04
53GO:0010617: circadian regulation of calcium ion oscillation6.55E-04
54GO:1901959: positive regulation of cutin biosynthetic process6.55E-04
55GO:0006352: DNA-templated transcription, initiation7.11E-04
56GO:0006415: translational termination7.11E-04
57GO:0043085: positive regulation of catalytic activity7.11E-04
58GO:0018298: protein-chromophore linkage8.71E-04
59GO:0010207: photosystem II assembly1.03E-03
60GO:0010022: meristem determinacy1.06E-03
61GO:0010623: programmed cell death involved in cell development1.06E-03
62GO:1901672: positive regulation of systemic acquired resistance1.06E-03
63GO:1904278: positive regulation of wax biosynthetic process1.06E-03
64GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.06E-03
65GO:0090153: regulation of sphingolipid biosynthetic process1.06E-03
66GO:0043157: response to cation stress1.06E-03
67GO:0005977: glycogen metabolic process1.06E-03
68GO:1902448: positive regulation of shade avoidance1.06E-03
69GO:0048586: regulation of long-day photoperiodism, flowering1.06E-03
70GO:0006954: inflammatory response1.06E-03
71GO:0006788: heme oxidation1.06E-03
72GO:0015979: photosynthesis1.10E-03
73GO:0005975: carbohydrate metabolic process1.29E-03
74GO:0009451: RNA modification1.50E-03
75GO:0031048: chromatin silencing by small RNA1.52E-03
76GO:0090308: regulation of methylation-dependent chromatin silencing1.52E-03
77GO:0046836: glycolipid transport1.52E-03
78GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.52E-03
79GO:0006107: oxaloacetate metabolic process1.52E-03
80GO:0009226: nucleotide-sugar biosynthetic process1.52E-03
81GO:0019048: modulation by virus of host morphology or physiology1.52E-03
82GO:1901332: negative regulation of lateral root development1.52E-03
83GO:0051567: histone H3-K9 methylation2.04E-03
84GO:0010508: positive regulation of autophagy2.04E-03
85GO:0006734: NADH metabolic process2.04E-03
86GO:1902347: response to strigolactone2.04E-03
87GO:0006749: glutathione metabolic process2.04E-03
88GO:0010021: amylopectin biosynthetic process2.04E-03
89GO:0006661: phosphatidylinositol biosynthetic process2.04E-03
90GO:0009765: photosynthesis, light harvesting2.04E-03
91GO:2000306: positive regulation of photomorphogenesis2.04E-03
92GO:0006109: regulation of carbohydrate metabolic process2.04E-03
93GO:0045723: positive regulation of fatty acid biosynthetic process2.04E-03
94GO:0010117: photoprotection2.61E-03
95GO:0046283: anthocyanin-containing compound metabolic process2.61E-03
96GO:0043097: pyrimidine nucleoside salvage2.61E-03
97GO:0009107: lipoate biosynthetic process2.61E-03
98GO:0080110: sporopollenin biosynthetic process2.61E-03
99GO:0006206: pyrimidine nucleobase metabolic process3.22E-03
100GO:0032973: amino acid export3.22E-03
101GO:0016458: gene silencing3.22E-03
102GO:0000741: karyogamy3.22E-03
103GO:0050665: hydrogen peroxide biosynthetic process3.22E-03
104GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.22E-03
105GO:0009959: negative gravitropism3.22E-03
106GO:0060918: auxin transport3.22E-03
107GO:1901371: regulation of leaf morphogenesis3.22E-03
108GO:0032502: developmental process3.70E-03
109GO:0009854: oxidative photosynthetic carbon pathway3.87E-03
110GO:0010019: chloroplast-nucleus signaling pathway3.87E-03
111GO:0080086: stamen filament development3.87E-03
112GO:0010310: regulation of hydrogen peroxide metabolic process3.87E-03
113GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.87E-03
114GO:0006400: tRNA modification4.57E-03
115GO:0051510: regulation of unidimensional cell growth4.57E-03
116GO:0009395: phospholipid catabolic process4.57E-03
117GO:0043090: amino acid import4.57E-03
118GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.57E-03
119GO:0009416: response to light stimulus4.73E-03
120GO:0010027: thylakoid membrane organization5.00E-03
121GO:0042255: ribosome assembly5.30E-03
122GO:0032508: DNA duplex unwinding5.30E-03
123GO:0046620: regulation of organ growth5.30E-03
124GO:0006353: DNA-templated transcription, termination5.30E-03
125GO:2000070: regulation of response to water deprivation5.30E-03
126GO:0006875: cellular metal ion homeostasis5.30E-03
127GO:0048564: photosystem I assembly5.30E-03
128GO:0009690: cytokinin metabolic process5.30E-03
129GO:0015995: chlorophyll biosynthetic process5.89E-03
130GO:0009657: plastid organization6.08E-03
131GO:0010204: defense response signaling pathway, resistance gene-independent6.08E-03
132GO:0017004: cytochrome complex assembly6.08E-03
133GO:0015996: chlorophyll catabolic process6.08E-03
134GO:0007186: G-protein coupled receptor signaling pathway6.08E-03
135GO:0048507: meristem development6.89E-03
136GO:0006754: ATP biosynthetic process6.89E-03
137GO:0098656: anion transmembrane transport6.89E-03
138GO:0009051: pentose-phosphate shunt, oxidative branch6.89E-03
139GO:0080144: amino acid homeostasis6.89E-03
140GO:0055085: transmembrane transport7.18E-03
141GO:0031425: chloroplast RNA processing7.74E-03
142GO:1900426: positive regulation of defense response to bacterium7.74E-03
143GO:0009638: phototropism7.74E-03
144GO:1900865: chloroplast RNA modification7.74E-03
145GO:0009637: response to blue light8.28E-03
146GO:0030422: production of siRNA involved in RNA interference8.62E-03
147GO:0008380: RNA splicing9.24E-03
148GO:0006839: mitochondrial transport9.45E-03
149GO:0018119: peptidyl-cysteine S-nitrosylation9.55E-03
150GO:0010216: maintenance of DNA methylation9.55E-03
151GO:0019684: photosynthesis, light reaction9.55E-03
152GO:0009089: lysine biosynthetic process via diaminopimelate9.55E-03
153GO:0009773: photosynthetic electron transport in photosystem I9.55E-03
154GO:0045037: protein import into chloroplast stroma1.05E-02
155GO:0010582: floral meristem determinacy1.05E-02
156GO:0010114: response to red light1.07E-02
157GO:0009785: blue light signaling pathway1.15E-02
158GO:0006108: malate metabolic process1.15E-02
159GO:0009718: anthocyanin-containing compound biosynthetic process1.15E-02
160GO:0010075: regulation of meristem growth1.15E-02
161GO:0009767: photosynthetic electron transport chain1.15E-02
162GO:0010628: positive regulation of gene expression1.15E-02
163GO:0009644: response to high light intensity1.16E-02
164GO:0019253: reductive pentose-phosphate cycle1.25E-02
165GO:0009887: animal organ morphogenesis1.25E-02
166GO:0009934: regulation of meristem structural organization1.25E-02
167GO:0010030: positive regulation of seed germination1.36E-02
168GO:0051603: proteolysis involved in cellular protein catabolic process1.50E-02
169GO:2000377: regulation of reactive oxygen species metabolic process1.58E-02
170GO:0007017: microtubule-based process1.69E-02
171GO:0016575: histone deacetylation1.69E-02
172GO:0010431: seed maturation1.81E-02
173GO:0031408: oxylipin biosynthetic process1.81E-02
174GO:0006306: DNA methylation1.81E-02
175GO:0006730: one-carbon metabolic process1.93E-02
176GO:0030245: cellulose catabolic process1.93E-02
177GO:0009686: gibberellin biosynthetic process2.05E-02
178GO:0019722: calcium-mediated signaling2.18E-02
179GO:0010089: xylem development2.18E-02
180GO:0010584: pollen exine formation2.18E-02
181GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.31E-02
182GO:0008033: tRNA processing2.44E-02
183GO:0010118: stomatal movement2.44E-02
184GO:0042631: cellular response to water deprivation2.44E-02
185GO:0006662: glycerol ether metabolic process2.57E-02
186GO:0010197: polar nucleus fusion2.57E-02
187GO:0010182: sugar mediated signaling pathway2.57E-02
188GO:0048868: pollen tube development2.57E-02
189GO:0006342: chromatin silencing2.57E-02
190GO:0010268: brassinosteroid homeostasis2.57E-02
191GO:0045489: pectin biosynthetic process2.57E-02
192GO:0009409: response to cold2.69E-02
193GO:0042752: regulation of circadian rhythm2.71E-02
194GO:0009646: response to absence of light2.71E-02
195GO:0006629: lipid metabolic process2.76E-02
196GO:0019252: starch biosynthetic process2.85E-02
197GO:0008654: phospholipid biosynthetic process2.85E-02
198GO:0055072: iron ion homeostasis2.85E-02
199GO:0009791: post-embryonic development2.85E-02
200GO:0016132: brassinosteroid biosynthetic process2.99E-02
201GO:0006810: transport3.08E-02
202GO:0009630: gravitropism3.13E-02
203GO:0010583: response to cyclopentenone3.13E-02
204GO:0016125: sterol metabolic process3.42E-02
205GO:0055114: oxidation-reduction process3.49E-02
206GO:0045490: pectin catabolic process3.56E-02
207GO:0007267: cell-cell signaling3.58E-02
208GO:0051607: defense response to virus3.73E-02
209GO:0016126: sterol biosynthetic process3.88E-02
210GO:0010029: regulation of seed germination4.04E-02
211GO:0009816: defense response to bacterium, incompatible interaction4.04E-02
212GO:0009627: systemic acquired resistance4.20E-02
213GO:0010468: regulation of gene expression4.24E-02
214GO:0016311: dephosphorylation4.52E-02
215GO:0071555: cell wall organization4.73E-02
216GO:0007275: multicellular organism development4.96E-02
RankGO TermAdjusted P value
1GO:0008974: phosphoribulokinase activity0.00E+00
2GO:0015229: L-ascorbic acid transporter activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0042903: tubulin deacetylase activity0.00E+00
10GO:0019899: enzyme binding5.18E-06
11GO:0043495: protein anchor5.85E-05
12GO:0001053: plastid sigma factor activity5.85E-05
13GO:0016987: sigma factor activity5.85E-05
14GO:0004462: lactoylglutathione lyase activity1.34E-04
15GO:0003993: acid phosphatase activity1.56E-04
16GO:0008158: hedgehog receptor activity2.99E-04
17GO:0008746: NAD(P)+ transhydrogenase activity2.99E-04
18GO:0004328: formamidase activity2.99E-04
19GO:0046906: tetrapyrrole binding2.99E-04
20GO:0005227: calcium activated cation channel activity2.99E-04
21GO:0051777: ent-kaurenoate oxidase activity2.99E-04
22GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity2.99E-04
23GO:0004813: alanine-tRNA ligase activity2.99E-04
24GO:0003747: translation release factor activity4.46E-04
25GO:0004519: endonuclease activity4.82E-04
26GO:0003988: acetyl-CoA C-acyltransferase activity6.55E-04
27GO:0008728: GTP diphosphokinase activity6.55E-04
28GO:0048531: beta-1,3-galactosyltransferase activity6.55E-04
29GO:0004362: glutathione-disulfide reductase activity6.55E-04
30GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.55E-04
31GO:0019156: isoamylase activity6.55E-04
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.55E-04
33GO:0004222: metalloendopeptidase activity9.82E-04
34GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.03E-03
35GO:0070402: NADPH binding1.06E-03
36GO:0016992: lipoate synthase activity1.06E-03
37GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.52E-03
38GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.52E-03
39GO:0035197: siRNA binding1.52E-03
40GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.52E-03
41GO:0009882: blue light photoreceptor activity1.52E-03
42GO:0017057: 6-phosphogluconolactonase activity1.52E-03
43GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.52E-03
44GO:0017089: glycolipid transporter activity1.52E-03
45GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.52E-03
46GO:0015086: cadmium ion transmembrane transporter activity1.52E-03
47GO:0048027: mRNA 5'-UTR binding1.52E-03
48GO:0048487: beta-tubulin binding1.52E-03
49GO:0016149: translation release factor activity, codon specific1.52E-03
50GO:0003824: catalytic activity1.94E-03
51GO:0004392: heme oxygenase (decyclizing) activity2.04E-03
52GO:0008891: glycolate oxidase activity2.04E-03
53GO:0051861: glycolipid binding2.04E-03
54GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.04E-03
55GO:0004045: aminoacyl-tRNA hydrolase activity2.04E-03
56GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.04E-03
57GO:0022891: substrate-specific transmembrane transporter activity2.05E-03
58GO:0030570: pectate lyase activity2.05E-03
59GO:0042802: identical protein binding2.09E-03
60GO:0008374: O-acyltransferase activity2.61E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor2.61E-03
62GO:0016615: malate dehydrogenase activity3.22E-03
63GO:0008200: ion channel inhibitor activity3.22E-03
64GO:0004556: alpha-amylase activity3.22E-03
65GO:0048038: quinone binding3.46E-03
66GO:0030060: L-malate dehydrogenase activity3.87E-03
67GO:0005261: cation channel activity3.87E-03
68GO:0008195: phosphatidate phosphatase activity3.87E-03
69GO:0004849: uridine kinase activity3.87E-03
70GO:0003730: mRNA 3'-UTR binding3.87E-03
71GO:0015103: inorganic anion transmembrane transporter activity4.57E-03
72GO:0003723: RNA binding5.21E-03
73GO:0016168: chlorophyll binding5.29E-03
74GO:0004033: aldo-keto reductase (NADP) activity5.30E-03
75GO:0008312: 7S RNA binding5.30E-03
76GO:0016829: lyase activity5.41E-03
77GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.08E-03
78GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.89E-03
79GO:0071949: FAD binding6.89E-03
80GO:0003924: GTPase activity7.07E-03
81GO:0030955: potassium ion binding7.74E-03
82GO:0004743: pyruvate kinase activity7.74E-03
83GO:0008047: enzyme activator activity8.62E-03
84GO:0004712: protein serine/threonine/tyrosine kinase activity9.05E-03
85GO:0000049: tRNA binding1.05E-02
86GO:0008378: galactosyltransferase activity1.05E-02
87GO:0004521: endoribonuclease activity1.05E-02
88GO:0000976: transcription regulatory region sequence-specific DNA binding1.05E-02
89GO:0004185: serine-type carboxypeptidase activity1.07E-02
90GO:0005525: GTP binding1.13E-02
91GO:0005315: inorganic phosphate transmembrane transporter activity1.15E-02
92GO:0008081: phosphoric diester hydrolase activity1.15E-02
93GO:0043621: protein self-association1.16E-02
94GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.45E-02
95GO:0003690: double-stranded DNA binding1.50E-02
96GO:0004857: enzyme inhibitor activity1.58E-02
97GO:0004407: histone deacetylase activity1.58E-02
98GO:0005528: FK506 binding1.58E-02
99GO:0004176: ATP-dependent peptidase activity1.81E-02
100GO:0033612: receptor serine/threonine kinase binding1.81E-02
101GO:0008810: cellulase activity2.05E-02
102GO:0003727: single-stranded RNA binding2.18E-02
103GO:0008514: organic anion transmembrane transporter activity2.18E-02
104GO:0004871: signal transducer activity2.25E-02
105GO:0047134: protein-disulfide reductase activity2.31E-02
106GO:0005199: structural constituent of cell wall2.57E-02
107GO:0046873: metal ion transmembrane transporter activity2.57E-02
108GO:0008080: N-acetyltransferase activity2.57E-02
109GO:0016491: oxidoreductase activity2.57E-02
110GO:0010181: FMN binding2.71E-02
111GO:0004791: thioredoxin-disulfide reductase activity2.71E-02
112GO:0050662: coenzyme binding2.71E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.28E-02
114GO:0005200: structural constituent of cytoskeleton3.58E-02
115GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.58E-02
116GO:0008237: metallopeptidase activity3.58E-02
117GO:0016597: amino acid binding3.73E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast3.15E-22
3GO:0009570: chloroplast stroma2.80E-08
4GO:0080085: signal recognition particle, chloroplast targeting4.08E-06
5GO:0009535: chloroplast thylakoid membrane5.14E-06
6GO:0042651: thylakoid membrane1.27E-04
7GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.71E-04
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.46E-04
9GO:0010319: stromule5.37E-04
10GO:0016605: PML body1.06E-03
11GO:0009528: plastid inner membrane1.06E-03
12GO:0009941: chloroplast envelope1.19E-03
13GO:0005719: nuclear euchromatin1.52E-03
14GO:0005773: vacuole1.70E-03
15GO:0009527: plastid outer membrane2.04E-03
16GO:0046658: anchored component of plasma membrane2.22E-03
17GO:0009523: photosystem II3.24E-03
18GO:0030529: intracellular ribonucleoprotein complex5.00E-03
19GO:0042644: chloroplast nucleoid6.89E-03
20GO:0045298: tubulin complex6.89E-03
21GO:0005720: nuclear heterochromatin6.89E-03
22GO:0009705: plant-type vacuole membrane7.38E-03
23GO:0015030: Cajal body7.74E-03
24GO:0016604: nuclear body7.74E-03
25GO:0043231: intracellular membrane-bounded organelle8.21E-03
26GO:0031225: anchored component of membrane1.03E-02
27GO:0032040: small-subunit processome1.05E-02
28GO:0030176: integral component of endoplasmic reticulum membrane1.36E-02
29GO:0009654: photosystem II oxygen evolving complex1.69E-02
30GO:0009532: plastid stroma1.81E-02
31GO:0009706: chloroplast inner membrane2.06E-02
32GO:0009579: thylakoid2.20E-02
33GO:0009505: plant-type cell wall2.36E-02
34GO:0009543: chloroplast thylakoid lumen2.58E-02
35GO:0019898: extrinsic component of membrane2.85E-02
36GO:0016021: integral component of membrane4.63E-02
37GO:0009707: chloroplast outer membrane4.69E-02
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Gene type



Gene DE type