Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G30940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042761: very long-chain fatty acid biosynthetic process2.32E-05
2GO:0009090: homoserine biosynthetic process3.64E-05
3GO:0019276: UDP-N-acetylgalactosamine metabolic process3.64E-05
4GO:0006047: UDP-N-acetylglucosamine metabolic process3.64E-05
5GO:0006898: receptor-mediated endocytosis9.09E-05
6GO:0030388: fructose 1,6-bisphosphate metabolic process9.09E-05
7GO:0015804: neutral amino acid transport9.09E-05
8GO:0055114: oxidation-reduction process1.16E-04
9GO:0006000: fructose metabolic process1.58E-04
10GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.58E-04
11GO:0009067: aspartate family amino acid biosynthetic process2.33E-04
12GO:0071483: cellular response to blue light3.14E-04
13GO:0010021: amylopectin biosynthetic process3.14E-04
14GO:0015995: chlorophyll biosynthetic process3.63E-04
15GO:0006656: phosphatidylcholine biosynthetic process4.01E-04
16GO:0009904: chloroplast accumulation movement4.01E-04
17GO:0010304: PSII associated light-harvesting complex II catabolic process4.92E-04
18GO:0009903: chloroplast avoidance movement5.88E-04
19GO:0009088: threonine biosynthetic process5.88E-04
20GO:0010196: nonphotochemical quenching6.87E-04
21GO:0032259: methylation6.97E-04
22GO:0005978: glycogen biosynthetic process7.90E-04
23GO:0030091: protein repair7.90E-04
24GO:0006002: fructose 6-phosphate metabolic process8.97E-04
25GO:0015996: chlorophyll catabolic process8.97E-04
26GO:0009086: methionine biosynthetic process1.12E-03
27GO:0005982: starch metabolic process1.12E-03
28GO:0009641: shade avoidance1.24E-03
29GO:0009773: photosynthetic electron transport in photosystem I1.36E-03
30GO:0009089: lysine biosynthetic process via diaminopimelate1.36E-03
31GO:0018107: peptidyl-threonine phosphorylation1.62E-03
32GO:0006094: gluconeogenesis1.62E-03
33GO:0005986: sucrose biosynthetic process1.62E-03
34GO:0019253: reductive pentose-phosphate cycle1.76E-03
35GO:0007015: actin filament organization1.76E-03
36GO:0010223: secondary shoot formation1.76E-03
37GO:0005985: sucrose metabolic process1.89E-03
38GO:0006636: unsaturated fatty acid biosynthetic process2.04E-03
39GO:0003333: amino acid transmembrane transport2.48E-03
40GO:0019748: secondary metabolic process2.64E-03
41GO:0006606: protein import into nucleus3.30E-03
42GO:0009741: response to brassinosteroid3.47E-03
43GO:0019252: starch biosynthetic process3.82E-03
44GO:0001666: response to hypoxia5.15E-03
45GO:0006906: vesicle fusion5.55E-03
46GO:0009813: flavonoid biosynthetic process6.39E-03
47GO:0006865: amino acid transport7.05E-03
48GO:0006887: exocytosis8.21E-03
49GO:0010224: response to UV-B1.10E-02
50GO:0016310: phosphorylation1.13E-02
51GO:0009626: plant-type hypersensitive response1.26E-02
52GO:0009553: embryo sac development1.34E-02
53GO:0018105: peptidyl-serine phosphorylation1.40E-02
54GO:0006979: response to oxidative stress2.07E-02
55GO:0009739: response to gibberellin2.19E-02
56GO:0009617: response to bacterium2.29E-02
57GO:0009733: response to auxin2.31E-02
58GO:0006810: transport3.02E-02
59GO:0009723: response to ethylene3.06E-02
60GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.30E-02
61GO:0044550: secondary metabolite biosynthetic process3.42E-02
62GO:0015979: photosynthesis3.54E-02
63GO:0045454: cell redox homeostasis3.66E-02
64GO:0009751: response to salicylic acid4.20E-02
65GO:0006629: lipid metabolic process4.25E-02
66GO:0009753: response to jasmonic acid4.46E-02
67GO:0008152: metabolic process4.55E-02
68GO:0009793: embryo development ending in seed dormancy4.73E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.64E-05
4GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.64E-05
5GO:0034256: chlorophyll(ide) b reductase activity3.64E-05
6GO:0045486: naringenin 3-dioxygenase activity3.64E-05
7GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.64E-05
8GO:0004412: homoserine dehydrogenase activity9.09E-05
9GO:0018708: thiol S-methyltransferase activity9.09E-05
10GO:0003844: 1,4-alpha-glucan branching enzyme activity9.09E-05
11GO:0000234: phosphoethanolamine N-methyltransferase activity9.09E-05
12GO:0015172: acidic amino acid transmembrane transporter activity9.09E-05
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.09E-05
14GO:0016491: oxidoreductase activity1.47E-04
15GO:0010277: chlorophyllide a oxygenase [overall] activity1.58E-04
16GO:0043169: cation binding1.58E-04
17GO:0004072: aspartate kinase activity2.33E-04
18GO:0019201: nucleotide kinase activity2.33E-04
19GO:0015175: neutral amino acid transmembrane transporter activity2.33E-04
20GO:0008200: ion channel inhibitor activity4.92E-04
21GO:0004017: adenylate kinase activity5.88E-04
22GO:0004602: glutathione peroxidase activity5.88E-04
23GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.88E-04
24GO:0004033: aldo-keto reductase (NADP) activity7.90E-04
25GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.97E-04
26GO:0015386: potassium:proton antiporter activity1.36E-03
27GO:0047372: acylglycerol lipase activity1.36E-03
28GO:0031418: L-ascorbic acid binding2.18E-03
29GO:0015079: potassium ion transmembrane transporter activity2.33E-03
30GO:0016779: nucleotidyltransferase activity2.64E-03
31GO:0008168: methyltransferase activity3.01E-03
32GO:0048038: quinone binding4.00E-03
33GO:0016597: amino acid binding4.95E-03
34GO:0008236: serine-type peptidase activity5.97E-03
35GO:0003746: translation elongation factor activity7.28E-03
36GO:0000149: SNARE binding7.74E-03
37GO:0050661: NADP binding7.97E-03
38GO:0005484: SNAP receptor activity8.68E-03
39GO:0004185: serine-type carboxypeptidase activity8.68E-03
40GO:0051537: 2 iron, 2 sulfur cluster binding9.17E-03
41GO:0015293: symporter activity9.42E-03
42GO:0016787: hydrolase activity9.53E-03
43GO:0015171: amino acid transmembrane transporter activity1.15E-02
44GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.23E-02
45GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.64E-02
46GO:0004252: serine-type endopeptidase activity1.73E-02
47GO:0008565: protein transporter activity1.83E-02
48GO:0005506: iron ion binding2.02E-02
49GO:0044212: transcription regulatory region DNA binding2.05E-02
50GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.40E-02
51GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.66E-02
52GO:0005524: ATP binding3.72E-02
53GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.86E-02
54GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.95E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.33E-09
2GO:0009535: chloroplast thylakoid membrane4.25E-07
3GO:0042651: thylakoid membrane8.79E-05
4GO:0009570: chloroplast stroma6.57E-04
5GO:0031982: vesicle7.90E-04
6GO:0009501: amyloplast7.90E-04
7GO:0031901: early endosome membrane1.01E-03
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.01E-03
9GO:0010287: plastoglobule1.41E-03
10GO:0009941: chloroplast envelope1.49E-03
11GO:0009534: chloroplast thylakoid1.89E-03
12GO:0005875: microtubule associated complex2.04E-03
13GO:0031969: chloroplast membrane3.87E-03
14GO:0010319: stromule4.75E-03
15GO:0031201: SNARE complex8.21E-03
16GO:0009706: chloroplast inner membrane1.37E-02
17GO:0009543: chloroplast thylakoid lumen1.61E-02
18GO:0005759: mitochondrial matrix1.89E-02
19GO:0016020: membrane3.82E-02
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Gene type



Gene DE type