co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070178: D-serine metabolic process	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:1905157: positive regulation of photosynthesis	0.00E+00
7	GO:0009069: serine family amino acid metabolic process	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
11	GO:1901259: chloroplast rRNA processing	8.81E-07
12	GO:0042026: protein refolding	8.20E-05
13	GO:0006353: DNA-templated transcription, termination	1.40E-04
14	GO:0009657: plastid organization	1.75E-04
15	GO:0032544: plastid translation	1.75E-04
16	GO:0080112: seed growth	1.80E-04
17	GO:0000476: maturation of 4.5S rRNA	1.80E-04
18	GO:0000967: rRNA 5'-end processing	1.80E-04
19	GO:1905039: carboxylic acid transmembrane transport	1.80E-04
20	GO:1905200: gibberellic acid transmembrane transport	1.80E-04
21	GO:0042371: vitamin K biosynthetic process	1.80E-04
22	GO:0043686: co-translational protein modification	1.80E-04
23	GO:0043007: maintenance of rDNA	1.80E-04
24	GO:0034337: RNA folding	1.80E-04
25	GO:0005991: trehalose metabolic process	1.80E-04
26	GO:0015995: chlorophyll biosynthetic process	3.01E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.05E-04
28	GO:0018026: peptidyl-lysine monomethylation	4.05E-04
29	GO:1904143: positive regulation of carotenoid biosynthetic process	4.05E-04
30	GO:0034470: ncRNA processing	4.05E-04
31	GO:0006954: inflammatory response	6.61E-04
32	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.45E-04
33	GO:0010731: protein glutathionylation	9.45E-04
34	GO:0006168: adenine salvage	9.45E-04
35	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.45E-04
36	GO:0006166: purine ribonucleoside salvage	9.45E-04
37	GO:0006020: inositol metabolic process	9.45E-04
38	GO:0051085: chaperone mediated protein folding requiring cofactor	9.45E-04
39	GO:0009152: purine ribonucleotide biosynthetic process	9.45E-04
40	GO:0046653: tetrahydrofolate metabolic process	9.45E-04
41	GO:0022622: root system development	1.25E-03
42	GO:0010107: potassium ion import	1.25E-03
43	GO:0006021: inositol biosynthetic process	1.25E-03
44	GO:0009958: positive gravitropism	1.37E-03
45	GO:0015979: photosynthesis	1.56E-03
46	GO:0098719: sodium ion import across plasma membrane	1.59E-03
47	GO:0006564: L-serine biosynthetic process	1.59E-03
48	GO:0010236: plastoquinone biosynthetic process	1.59E-03
49	GO:0031365: N-terminal protein amino acid modification	1.59E-03
50	GO:0044209: AMP salvage	1.59E-03
51	GO:0032502: developmental process	1.79E-03
52	GO:0000741: karyogamy	1.96E-03
53	GO:0046855: inositol phosphate dephosphorylation	1.96E-03
54	GO:1902456: regulation of stomatal opening	1.96E-03
55	GO:0042793: transcription from plastid promoter	1.96E-03
56	GO:0010190: cytochrome b6f complex assembly	1.96E-03
57	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.96E-03
58	GO:0009643: photosynthetic acclimation	1.96E-03
59	GO:0006563: L-serine metabolic process	1.96E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.96E-03
61	GO:0042372: phylloquinone biosynthetic process	2.35E-03
62	GO:0006458: 'de novo' protein folding	2.35E-03
63	GO:0009955: adaxial/abaxial pattern specification	2.35E-03
64	GO:0032880: regulation of protein localization	2.77E-03
65	GO:0009772: photosynthetic electron transport in photosystem II	2.77E-03
66	GO:0042255: ribosome assembly	3.21E-03
67	GO:0070413: trehalose metabolism in response to stress	3.21E-03
68	GO:0010078: maintenance of root meristem identity	3.21E-03
69	GO:0055075: potassium ion homeostasis	3.21E-03
70	GO:0052543: callose deposition in cell wall	3.21E-03
71	GO:0048564: photosystem I assembly	3.21E-03
72	GO:0048527: lateral root development	3.63E-03
73	GO:0043562: cellular response to nitrogen levels	3.67E-03
74	GO:0009821: alkaloid biosynthetic process	4.15E-03
75	GO:0090333: regulation of stomatal closure	4.15E-03
76	GO:0046685: response to arsenic-containing substance	4.15E-03
77	GO:0051453: regulation of intracellular pH	4.65E-03
78	GO:0005982: starch metabolic process	4.65E-03
79	GO:0006779: porphyrin-containing compound biosynthetic process	4.65E-03
80	GO:0009658: chloroplast organization	5.04E-03
81	GO:0006782: protoporphyrinogen IX biosynthetic process	5.18E-03
82	GO:0015770: sucrose transport	5.72E-03
83	GO:0006415: translational termination	5.72E-03
84	GO:0019684: photosynthesis, light reaction	5.72E-03
85	GO:0009684: indoleacetic acid biosynthetic process	5.72E-03
86	GO:0006855: drug transmembrane transport	5.98E-03
87	GO:0006790: sulfur compound metabolic process	6.28E-03
88	GO:0010588: cotyledon vascular tissue pattern formation	6.86E-03
89	GO:2000012: regulation of auxin polar transport	6.86E-03
90	GO:0009767: photosynthetic electron transport chain	6.86E-03
91	GO:0010207: photosystem II assembly	7.46E-03
92	GO:0048467: gynoecium development	7.46E-03
93	GO:0009901: anther dehiscence	8.08E-03
94	GO:0019853: L-ascorbic acid biosynthetic process	8.08E-03
95	GO:0046854: phosphatidylinositol phosphorylation	8.08E-03
96	GO:0048367: shoot system development	8.42E-03
97	GO:0005992: trehalose biosynthetic process	9.37E-03
98	GO:0006418: tRNA aminoacylation for protein translation	1.00E-02
99	GO:0009768: photosynthesis, light harvesting in photosystem I	1.00E-02
100	GO:0019915: lipid storage	1.07E-02
101	GO:0061077: chaperone-mediated protein folding	1.07E-02
102	GO:0006730: one-carbon metabolic process	1.14E-02
103	GO:0016226: iron-sulfur cluster assembly	1.14E-02
104	GO:0007005: mitochondrion organization	1.14E-02
105	GO:0006012: galactose metabolic process	1.22E-02
106	GO:0009306: protein secretion	1.29E-02
107	GO:0009058: biosynthetic process	1.30E-02
108	GO:0008284: positive regulation of cell proliferation	1.37E-02
109	GO:0016117: carotenoid biosynthetic process	1.37E-02
110	GO:0080022: primary root development	1.44E-02
111	GO:0010087: phloem or xylem histogenesis	1.44E-02
112	GO:0006885: regulation of pH	1.52E-02
113	GO:0006662: glycerol ether metabolic process	1.52E-02
114	GO:0010197: polar nucleus fusion	1.52E-02
115	GO:0010182: sugar mediated signaling pathway	1.52E-02
116	GO:0009741: response to brassinosteroid	1.52E-02
117	GO:0006814: sodium ion transport	1.60E-02
118	GO:0009646: response to absence of light	1.60E-02
119	GO:0048825: cotyledon development	1.68E-02
120	GO:0019252: starch biosynthetic process	1.68E-02
121	GO:0009851: auxin biosynthetic process	1.68E-02
122	GO:1901657: glycosyl compound metabolic process	1.94E-02
123	GO:0009735: response to cytokinin	2.01E-02
124	GO:0009555: pollen development	2.25E-02
125	GO:0009416: response to light stimulus	2.25E-02
126	GO:0010027: thylakoid membrane organization	2.30E-02
127	GO:0009607: response to biotic stimulus	2.39E-02
128	GO:0009627: systemic acquired resistance	2.48E-02
129	GO:0009817: defense response to fungus, incompatible interaction	2.77E-02
130	GO:0048481: plant ovule development	2.77E-02
131	GO:0008219: cell death	2.77E-02
132	GO:0009832: plant-type cell wall biogenesis	2.87E-02
133	GO:0009813: flavonoid biosynthetic process	2.87E-02
134	GO:0006457: protein folding	3.10E-02
135	GO:0009853: photorespiration	3.28E-02
136	GO:0034599: cellular response to oxidative stress	3.39E-02
137	GO:0045454: cell redox homeostasis	3.91E-02
138	GO:0010114: response to red light	3.93E-02
139	GO:0051707: response to other organism	3.93E-02
140	GO:0042538: hyperosmotic salinity response	4.62E-02
141	GO:0016042: lipid catabolic process	4.68E-02
142	GO:0006813: potassium ion transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0090711: FMN hydrolase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0030378: serine racemase activity	0.00E+00
5	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
8	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0019843: rRNA binding	2.81E-05
11	GO:0042586: peptide deformylase activity	1.80E-04
12	GO:0004856: xylulokinase activity	1.80E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.80E-04
14	GO:1905201: gibberellin transmembrane transporter activity	1.80E-04
15	GO:0015386: potassium:proton antiporter activity	3.48E-04
16	GO:0044183: protein binding involved in protein folding	3.48E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	4.05E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	4.05E-04
19	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.05E-04
20	GO:0016630: protochlorophyllide reductase activity	4.05E-04
21	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.05E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	4.05E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	4.05E-04
24	GO:0033201: alpha-1,4-glucan synthase activity	4.05E-04
25	GO:0004373: glycogen (starch) synthase activity	6.61E-04
26	GO:0002161: aminoacyl-tRNA editing activity	6.61E-04
27	GO:0004148: dihydrolipoyl dehydrogenase activity	6.61E-04
28	GO:0004751: ribose-5-phosphate isomerase activity	6.61E-04
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.61E-04
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.61E-04
31	GO:0008864: formyltetrahydrofolate deformylase activity	6.61E-04
32	GO:0016851: magnesium chelatase activity	9.45E-04
33	GO:0003999: adenine phosphoribosyltransferase activity	9.45E-04
34	GO:0016149: translation release factor activity, codon specific	9.45E-04
35	GO:0022890: inorganic cation transmembrane transporter activity	9.45E-04
36	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.45E-04
37	GO:0003727: single-stranded RNA binding	1.09E-03
38	GO:0045430: chalcone isomerase activity	1.25E-03
39	GO:0009011: starch synthase activity	1.25E-03
40	GO:0004659: prenyltransferase activity	1.25E-03
41	GO:0016279: protein-lysine N-methyltransferase activity	1.25E-03
42	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.25E-03
43	GO:0051082: unfolded protein binding	1.45E-03
44	GO:0016846: carbon-sulfur lyase activity	1.59E-03
45	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.59E-03
46	GO:0003959: NADPH dehydrogenase activity	1.59E-03
47	GO:0015081: sodium ion transmembrane transporter activity	1.96E-03
48	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.35E-03
49	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.35E-03
50	GO:0004033: aldo-keto reductase (NADP) activity	3.21E-03
51	GO:0015238: drug transmembrane transporter activity	3.30E-03
52	GO:0003747: translation release factor activity	4.15E-03
53	GO:0016844: strictosidine synthase activity	4.65E-03
54	GO:0043621: protein self-association	5.54E-03
55	GO:0008515: sucrose transmembrane transporter activity	5.72E-03
56	GO:0008559: xenobiotic-transporting ATPase activity	5.72E-03
57	GO:0000049: tRNA binding	6.28E-03
58	GO:0003725: double-stranded RNA binding	6.86E-03
59	GO:0004022: alcohol dehydrogenase (NAD) activity	6.86E-03
60	GO:0004089: carbonate dehydratase activity	6.86E-03
61	GO:0031072: heat shock protein binding	6.86E-03
62	GO:0008083: growth factor activity	7.46E-03
63	GO:0008266: poly(U) RNA binding	7.46E-03
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.46E-03
65	GO:0051119: sugar transmembrane transporter activity	8.08E-03
66	GO:0031409: pigment binding	8.71E-03
67	GO:0051536: iron-sulfur cluster binding	9.37E-03
68	GO:0015079: potassium ion transmembrane transporter activity	1.00E-02
69	GO:0003723: RNA binding	1.06E-02
70	GO:0047134: protein-disulfide reductase activity	1.37E-02
71	GO:0004812: aminoacyl-tRNA ligase activity	1.37E-02
72	GO:0015299: solute:proton antiporter activity	1.60E-02
73	GO:0004791: thioredoxin-disulfide reductase activity	1.60E-02
74	GO:0015297: antiporter activity	1.63E-02
75	GO:0048038: quinone binding	1.77E-02
76	GO:0015385: sodium:proton antiporter activity	1.94E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.94E-02
78	GO:0016791: phosphatase activity	2.03E-02
79	GO:0016597: amino acid binding	2.20E-02
80	GO:0016168: chlorophyll binding	2.39E-02
81	GO:0102483: scopolin beta-glucosidase activity	2.58E-02
82	GO:0016788: hydrolase activity, acting on ester bonds	2.69E-02
83	GO:0003993: acid phosphatase activity	3.39E-02
84	GO:0008422: beta-glucosidase activity	3.50E-02
85	GO:0004364: glutathione transferase activity	3.82E-02
86	GO:0003735: structural constituent of ribosome	4.40E-02
87	GO:0051287: NAD binding	4.50E-02
88	GO:0005509: calcium ion binding	4.87E-02
89	GO:0016787: hydrolase activity	4.89E-02
90	GO:0003690: double-stranded DNA binding	4.98E-02
91	GO:0016298: lipase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	7.74E-30
3	GO:0009570: chloroplast stroma	4.92E-16
4	GO:0009535: chloroplast thylakoid membrane	4.46E-14
5	GO:0009579: thylakoid	6.84E-09
6	GO:0009534: chloroplast thylakoid	9.59E-08
7	GO:0009941: chloroplast envelope	7.84E-07
8	GO:0031969: chloroplast membrane	2.30E-06
9	GO:0009543: chloroplast thylakoid lumen	2.81E-05
10	GO:0009654: photosystem II oxygen evolving complex	4.22E-05
11	GO:0031977: thylakoid lumen	5.25E-05
12	GO:0019898: extrinsic component of membrane	1.30E-04
13	GO:0009344: nitrite reductase complex [NAD(P)H]	1.80E-04
14	GO:0009547: plastid ribosome	1.80E-04
15	GO:0009295: nucleoid	2.05E-04
16	GO:0009508: plastid chromosome	4.55E-04
17	GO:0030095: chloroplast photosystem II	5.13E-04
18	GO:0010007: magnesium chelatase complex	6.61E-04
19	GO:0033281: TAT protein transport complex	6.61E-04
20	GO:0009501: amyloplast	3.21E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.15E-03
22	GO:0005763: mitochondrial small ribosomal subunit	4.15E-03
23	GO:0000311: plastid large ribosomal subunit	6.28E-03
24	GO:0032040: small-subunit processome	6.28E-03
25	GO:0030076: light-harvesting complex	8.08E-03
26	GO:0015935: small ribosomal subunit	1.07E-02
27	GO:0010287: plastoglobule	1.17E-02
28	GO:0005840: ribosome	1.72E-02
29	GO:0010319: stromule	2.11E-02
30	GO:0009536: plastid	2.17E-02
31	GO:0000325: plant-type vacuole	3.08E-02