co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006907: pinocytosis	0.00E+00
2	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0000819: sister chromatid segregation	0.00E+00
5	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
6	GO:0045786: negative regulation of cell cycle	1.75E-04
7	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.75E-04
8	GO:0032958: inositol phosphate biosynthetic process	1.75E-04
9	GO:0010070: zygote asymmetric cell division	1.75E-04
10	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.28E-04
11	GO:0010069: zygote asymmetric cytokinesis in embryo sac	3.96E-04
12	GO:0061062: regulation of nematode larval development	3.96E-04
13	GO:0009887: animal organ morphogenesis	4.96E-04
14	GO:0048575: short-day photoperiodism, flowering	6.47E-04
15	GO:0090506: axillary shoot meristem initiation	6.47E-04
16	GO:0010226: response to lithium ion	6.47E-04
17	GO:0006518: peptide metabolic process	6.47E-04
18	GO:0010321: regulation of vegetative phase change	9.23E-04
19	GO:0006020: inositol metabolic process	9.23E-04
20	GO:0007276: gamete generation	9.23E-04
21	GO:0009686: gibberellin biosynthetic process	9.77E-04
22	GO:0042127: regulation of cell proliferation	1.06E-03
23	GO:0009956: radial pattern formation	1.22E-03
24	GO:0048629: trichome patterning	1.22E-03
25	GO:0042991: transcription factor import into nucleus	1.22E-03
26	GO:0007018: microtubule-based movement	1.42E-03
27	GO:0048497: maintenance of floral organ identity	1.56E-03
28	GO:0032502: developmental process	1.73E-03
29	GO:0010583: response to cyclopentenone	1.73E-03
30	GO:0010942: positive regulation of cell death	1.91E-03
31	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.91E-03
32	GO:0042793: transcription from plastid promoter	1.91E-03
33	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.30E-03
34	GO:0006351: transcription, DNA-templated	2.42E-03
35	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.70E-03
36	GO:0000712: resolution of meiotic recombination intermediates	2.70E-03
37	GO:0007050: cell cycle arrest	2.70E-03
38	GO:0000082: G1/S transition of mitotic cell cycle	2.70E-03
39	GO:0010444: guard mother cell differentiation	2.70E-03
40	GO:0010492: maintenance of shoot apical meristem identity	3.13E-03
41	GO:0042255: ribosome assembly	3.13E-03
42	GO:0006353: DNA-templated transcription, termination	3.13E-03
43	GO:0006811: ion transport	3.35E-03
44	GO:0007186: G-protein coupled receptor signaling pathway	3.58E-03
45	GO:0006468: protein phosphorylation	3.69E-03
46	GO:0009056: catabolic process	4.05E-03
47	GO:0048589: developmental growth	4.05E-03
48	GO:0009641: shade avoidance	5.05E-03
49	GO:0006949: syncytium formation	5.05E-03
50	GO:0006259: DNA metabolic process	5.05E-03
51	GO:0006782: protoporphyrinogen IX biosynthetic process	5.05E-03
52	GO:0009416: response to light stimulus	5.23E-03
53	GO:0008285: negative regulation of cell proliferation	5.58E-03
54	GO:0006265: DNA topological change	5.58E-03
55	GO:0006312: mitotic recombination	6.13E-03
56	GO:0005983: starch catabolic process	6.13E-03
57	GO:0010152: pollen maturation	6.13E-03
58	GO:0009664: plant-type cell wall organization	6.21E-03
59	GO:0010540: basipetal auxin transport	7.28E-03
60	GO:0006302: double-strand break repair	7.28E-03
61	GO:0048768: root hair cell tip growth	7.28E-03
62	GO:0009933: meristem structural organization	7.28E-03
63	GO:0010223: secondary shoot formation	7.28E-03
64	GO:0009825: multidimensional cell growth	7.89E-03
65	GO:0048316: seed development	8.14E-03
66	GO:0006863: purine nucleobase transport	8.51E-03
67	GO:0006636: unsaturated fatty acid biosynthetic process	8.51E-03
68	GO:0009740: gibberellic acid mediated signaling pathway	8.94E-03
69	GO:0019953: sexual reproduction	9.80E-03
70	GO:0006874: cellular calcium ion homeostasis	9.80E-03
71	GO:0016567: protein ubiquitination	9.91E-03
72	GO:0051321: meiotic cell cycle	1.05E-02
73	GO:0001944: vasculature development	1.19E-02
74	GO:0048443: stamen development	1.26E-02
75	GO:0010091: trichome branching	1.26E-02
76	GO:0000271: polysaccharide biosynthetic process	1.41E-02
77	GO:0000413: protein peptidyl-prolyl isomerization	1.41E-02
78	GO:0009741: response to brassinosteroid	1.49E-02
79	GO:0045489: pectin biosynthetic process	1.49E-02
80	GO:0010305: leaf vascular tissue pattern formation	1.49E-02
81	GO:0009958: positive gravitropism	1.49E-02
82	GO:0071555: cell wall organization	1.52E-02
83	GO:0007059: chromosome segregation	1.56E-02
84	GO:0009734: auxin-activated signaling pathway	1.61E-02
85	GO:0048825: cotyledon development	1.64E-02
86	GO:0071554: cell wall organization or biogenesis	1.72E-02
87	GO:0002229: defense response to oomycetes	1.72E-02
88	GO:0009739: response to gibberellin	1.84E-02
89	GO:0009908: flower development	1.90E-02
90	GO:0009828: plant-type cell wall loosening	1.98E-02
91	GO:0009567: double fertilization forming a zygote and endosperm	1.98E-02
92	GO:0019760: glucosinolate metabolic process	1.98E-02
93	GO:0006355: regulation of transcription, DNA-templated	2.09E-02
94	GO:0000910: cytokinesis	2.15E-02
95	GO:0016126: sterol biosynthetic process	2.24E-02
96	GO:0051301: cell division	2.40E-02
97	GO:0009826: unidimensional cell growth	2.46E-02
98	GO:0015995: chlorophyll biosynthetic process	2.52E-02
99	GO:0010411: xyloglucan metabolic process	2.52E-02
100	GO:0048573: photoperiodism, flowering	2.52E-02
101	GO:0009658: chloroplast organization	2.55E-02
102	GO:0009817: defense response to fungus, incompatible interaction	2.71E-02
103	GO:0048366: leaf development	3.00E-02
104	GO:0016051: carbohydrate biosynthetic process	3.20E-02
105	GO:0006839: mitochondrial transport	3.52E-02
106	GO:0030001: metal ion transport	3.52E-02
107	GO:0009926: auxin polar transport	3.84E-02
108	GO:0009744: response to sucrose	3.84E-02
109	GO:0051707: response to other organism	3.84E-02
110	GO:0045892: negative regulation of transcription, DNA-templated	3.84E-02
111	GO:0042546: cell wall biogenesis	3.95E-02
112	GO:0009965: leaf morphogenesis	4.17E-02
113	GO:0042538: hyperosmotic salinity response	4.51E-02
114	GO:0016042: lipid catabolic process	4.52E-02
115	GO:0009751: response to salicylic acid	4.58E-02
116	GO:0006364: rRNA processing	4.74E-02
117	GO:0009736: cytokinin-activated signaling pathway	4.74E-02
118	GO:0048364: root development	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.75E-04
4	GO:0000829: inositol heptakisphosphate kinase activity	1.75E-04
5	GO:0000828: inositol hexakisphosphate kinase activity	1.75E-04
6	GO:0017022: myosin binding	3.96E-04
7	GO:0010296: prenylcysteine methylesterase activity	3.96E-04
8	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.96E-04
9	GO:0004109: coproporphyrinogen oxidase activity	3.96E-04
10	GO:0008805: carbon-monoxide oxygenase activity	3.96E-04
11	GO:0019156: isoamylase activity	3.96E-04
12	GO:0045544: gibberellin 20-oxidase activity	9.23E-04
13	GO:0003916: DNA topoisomerase activity	9.23E-04
14	GO:0003777: microtubule motor activity	1.02E-03
15	GO:0010011: auxin binding	1.22E-03
16	GO:0004930: G-protein coupled receptor activity	1.22E-03
17	GO:0043565: sequence-specific DNA binding	1.27E-03
18	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.91E-03
19	GO:0030332: cyclin binding	1.91E-03
20	GO:0004556: alpha-amylase activity	1.91E-03
21	GO:0004674: protein serine/threonine kinase activity	3.33E-03
22	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.58E-03
23	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.58E-03
24	GO:0003725: double-stranded RNA binding	6.70E-03
25	GO:0005217: intracellular ligand-gated ion channel activity	7.89E-03
26	GO:0003712: transcription cofactor activity	7.89E-03
27	GO:0004970: ionotropic glutamate receptor activity	7.89E-03
28	GO:0004672: protein kinase activity	8.20E-03
29	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.12E-03
30	GO:0003779: actin binding	9.21E-03
31	GO:0005345: purine nucleobase transmembrane transporter activity	9.80E-03
32	GO:0008408: 3'-5' exonuclease activity	1.05E-02
33	GO:0008094: DNA-dependent ATPase activity	1.05E-02
34	GO:0033612: receptor serine/threonine kinase binding	1.05E-02
35	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.12E-02
36	GO:0003727: single-stranded RNA binding	1.26E-02
37	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.36E-02
38	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.49E-02
39	GO:0001085: RNA polymerase II transcription factor binding	1.49E-02
40	GO:0016853: isomerase activity	1.56E-02
41	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.72E-02
42	GO:0008017: microtubule binding	1.72E-02
43	GO:0016759: cellulose synthase activity	1.98E-02
44	GO:0016413: O-acetyltransferase activity	2.15E-02
45	GO:0046983: protein dimerization activity	2.34E-02
46	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.52E-02
47	GO:0016788: hydrolase activity, acting on ester bonds	2.60E-02
48	GO:0008236: serine-type peptidase activity	2.61E-02
49	GO:0005096: GTPase activator activity	2.80E-02
50	GO:0004222: metalloendopeptidase activity	2.90E-02
51	GO:0030145: manganese ion binding	3.00E-02
52	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.00E-02
53	GO:0052689: carboxylic ester hydrolase activity	3.49E-02
54	GO:0042803: protein homodimerization activity	3.96E-02
55	GO:0004871: signal transducer activity	3.96E-02
56	GO:0004722: protein serine/threonine phosphatase activity	4.14E-02
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.28E-02
58	GO:0003690: double-stranded DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	1.75E-04
3	GO:0009569: chloroplast starch grain	3.96E-04
4	GO:0030870: Mre11 complex	3.96E-04
5	GO:0009531: secondary cell wall	9.23E-04
6	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.22E-03
7	GO:0000795: synaptonemal complex	1.56E-03
8	GO:0042644: chloroplast nucleoid	4.05E-03
9	GO:0009536: plastid	5.99E-03
10	GO:0016021: integral component of membrane	6.65E-03
11	GO:0005875: microtubule associated complex	8.51E-03
12	GO:0005871: kinesin complex	1.33E-02
13	GO:0000785: chromatin	1.81E-02
14	GO:0046658: anchored component of plasma membrane	2.18E-02
15	GO:0005667: transcription factor complex	2.42E-02
16	GO:0009707: chloroplast outer membrane	2.71E-02
17	GO:0005874: microtubule	3.06E-02
18	GO:0031225: anchored component of membrane	3.75E-02
19	GO:0090406: pollen tube	3.84E-02