co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0046474: glycerophospholipid biosynthetic process	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0046322: negative regulation of fatty acid oxidation	0.00E+00
6	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
7	GO:0032206: positive regulation of telomere maintenance	0.00E+00
8	GO:0046620: regulation of organ growth	8.17E-06
9	GO:0016554: cytidine to uridine editing	1.37E-04
10	GO:0009733: response to auxin	1.86E-04
11	GO:0051013: microtubule severing	3.04E-04
12	GO:0048363: mucilage pectin metabolic process	3.04E-04
13	GO:0019478: D-amino acid catabolic process	3.04E-04
14	GO:0009090: homoserine biosynthetic process	3.04E-04
15	GO:0043489: RNA stabilization	3.04E-04
16	GO:0043686: co-translational protein modification	3.04E-04
17	GO:1900865: chloroplast RNA modification	5.40E-04
18	GO:0031648: protein destabilization	6.66E-04
19	GO:2000123: positive regulation of stomatal complex development	6.66E-04
20	GO:0071668: plant-type cell wall assembly	6.66E-04
21	GO:0009786: regulation of asymmetric cell division	6.66E-04
22	GO:0005983: starch catabolic process	8.31E-04
23	GO:0045910: negative regulation of DNA recombination	1.08E-03
24	GO:1901562: response to paraquat	1.08E-03
25	GO:0051604: protein maturation	1.08E-03
26	GO:0051017: actin filament bundle assembly	1.45E-03
27	GO:0009067: aspartate family amino acid biosynthetic process	1.55E-03
28	GO:0051513: regulation of monopolar cell growth	1.55E-03
29	GO:0007231: osmosensory signaling pathway	1.55E-03
30	GO:0051639: actin filament network formation	1.55E-03
31	GO:0010239: chloroplast mRNA processing	1.55E-03
32	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.55E-03
33	GO:1990019: protein storage vacuole organization	1.55E-03
34	GO:0046739: transport of virus in multicellular host	1.55E-03
35	GO:0009926: auxin polar transport	1.66E-03
36	GO:0051764: actin crosslink formation	2.07E-03
37	GO:0009765: photosynthesis, light harvesting	2.07E-03
38	GO:0033500: carbohydrate homeostasis	2.07E-03
39	GO:2000038: regulation of stomatal complex development	2.07E-03
40	GO:0016117: carotenoid biosynthetic process	2.47E-03
41	GO:0031365: N-terminal protein amino acid modification	2.65E-03
42	GO:0009107: lipoate biosynthetic process	2.65E-03
43	GO:0016123: xanthophyll biosynthetic process	2.65E-03
44	GO:0010158: abaxial cell fate specification	2.65E-03
45	GO:0010375: stomatal complex patterning	2.65E-03
46	GO:0009696: salicylic acid metabolic process	2.65E-03
47	GO:0080110: sporopollenin biosynthetic process	2.65E-03
48	GO:0016120: carotene biosynthetic process	2.65E-03
49	GO:0010236: plastoquinone biosynthetic process	2.65E-03
50	GO:0048497: maintenance of floral organ identity	2.65E-03
51	GO:0000271: polysaccharide biosynthetic process	2.67E-03
52	GO:0045489: pectin biosynthetic process	2.88E-03
53	GO:0009913: epidermal cell differentiation	3.27E-03
54	GO:0006655: phosphatidylglycerol biosynthetic process	3.27E-03
55	GO:1902456: regulation of stomatal opening	3.27E-03
56	GO:0033365: protein localization to organelle	3.27E-03
57	GO:0009734: auxin-activated signaling pathway	3.29E-03
58	GO:0009088: threonine biosynthetic process	3.93E-03
59	GO:0009648: photoperiodism	3.93E-03
60	GO:0071333: cellular response to glucose stimulus	3.93E-03
61	GO:1901259: chloroplast rRNA processing	3.93E-03
62	GO:0009082: branched-chain amino acid biosynthetic process	3.93E-03
63	GO:0009099: valine biosynthetic process	3.93E-03
64	GO:0030488: tRNA methylation	3.93E-03
65	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.27E-03
66	GO:0010050: vegetative phase change	4.64E-03
67	GO:0010098: suspensor development	4.64E-03
68	GO:0015693: magnesium ion transport	4.64E-03
69	GO:0000105: histidine biosynthetic process	5.39E-03
70	GO:0006353: DNA-templated transcription, termination	5.39E-03
71	GO:0009850: auxin metabolic process	5.39E-03
72	GO:0010497: plasmodesmata-mediated intercellular transport	6.18E-03
73	GO:0009657: plastid organization	6.18E-03
74	GO:0019430: removal of superoxide radicals	6.18E-03
75	GO:0009097: isoleucine biosynthetic process	6.18E-03
76	GO:0006098: pentose-phosphate shunt	7.01E-03
77	GO:0051865: protein autoubiquitination	7.01E-03
78	GO:0040008: regulation of growth	7.17E-03
79	GO:0009451: RNA modification	7.84E-03
80	GO:0005982: starch metabolic process	7.87E-03
81	GO:0006779: porphyrin-containing compound biosynthetic process	7.87E-03
82	GO:0000723: telomere maintenance	7.87E-03
83	GO:0009098: leucine biosynthetic process	7.87E-03
84	GO:0009086: methionine biosynthetic process	7.87E-03
85	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.87E-03
86	GO:0042761: very long-chain fatty acid biosynthetic process	7.87E-03
87	GO:0016051: carbohydrate biosynthetic process	8.49E-03
88	GO:0048829: root cap development	8.77E-03
89	GO:0009641: shade avoidance	8.77E-03
90	GO:0006298: mismatch repair	8.77E-03
91	GO:0010629: negative regulation of gene expression	8.77E-03
92	GO:0006782: protoporphyrinogen IX biosynthetic process	8.77E-03
93	GO:0006535: cysteine biosynthetic process from serine	8.77E-03
94	GO:0006816: calcium ion transport	9.71E-03
95	GO:0009089: lysine biosynthetic process via diaminopimelate	9.71E-03
96	GO:0009073: aromatic amino acid family biosynthetic process	9.71E-03
97	GO:0045037: protein import into chloroplast stroma	1.07E-02
98	GO:0010582: floral meristem determinacy	1.07E-02
99	GO:0009725: response to hormone	1.17E-02
100	GO:0006094: gluconeogenesis	1.17E-02
101	GO:0010588: cotyledon vascular tissue pattern formation	1.17E-02
102	GO:0030048: actin filament-based movement	1.17E-02
103	GO:0009691: cytokinin biosynthetic process	1.17E-02
104	GO:0010020: chloroplast fission	1.27E-02
105	GO:0010207: photosystem II assembly	1.27E-02
106	GO:0009825: multidimensional cell growth	1.38E-02
107	GO:0070588: calcium ion transmembrane transport	1.38E-02
108	GO:0000162: tryptophan biosynthetic process	1.49E-02
109	GO:0010025: wax biosynthetic process	1.49E-02
110	GO:0019344: cysteine biosynthetic process	1.60E-02
111	GO:0043622: cortical microtubule organization	1.72E-02
112	GO:0048511: rhythmic process	1.84E-02
113	GO:0010431: seed maturation	1.84E-02
114	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.96E-02
115	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.09E-02
116	GO:0010082: regulation of root meristem growth	2.09E-02
117	GO:0010584: pollen exine formation	2.22E-02
118	GO:0006284: base-excision repair	2.22E-02
119	GO:0010091: trichome branching	2.22E-02
120	GO:0045892: negative regulation of transcription, DNA-templated	2.23E-02
121	GO:0010087: phloem or xylem histogenesis	2.48E-02
122	GO:0010118: stomatal movement	2.48E-02
123	GO:0000226: microtubule cytoskeleton organization	2.48E-02
124	GO:0080022: primary root development	2.48E-02
125	GO:0008033: tRNA processing	2.48E-02
126	GO:0034220: ion transmembrane transport	2.48E-02
127	GO:0010182: sugar mediated signaling pathway	2.62E-02
128	GO:0009958: positive gravitropism	2.62E-02
129	GO:0010305: leaf vascular tissue pattern formation	2.62E-02
130	GO:0009793: embryo development ending in seed dormancy	2.71E-02
131	GO:0007018: microtubule-based movement	2.76E-02
132	GO:0042752: regulation of circadian rhythm	2.76E-02
133	GO:0048825: cotyledon development	2.90E-02
134	GO:0016310: phosphorylation	3.02E-02
135	GO:0071554: cell wall organization or biogenesis	3.04E-02
136	GO:0000302: response to reactive oxygen species	3.04E-02
137	GO:0032502: developmental process	3.19E-02
138	GO:0016032: viral process	3.19E-02
139	GO:0010090: trichome morphogenesis	3.33E-02
140	GO:0006464: cellular protein modification process	3.49E-02
141	GO:0006914: autophagy	3.49E-02
142	GO:0009828: plant-type cell wall loosening	3.49E-02
143	GO:0007267: cell-cell signaling	3.64E-02
144	GO:0051607: defense response to virus	3.79E-02
145	GO:0001666: response to hypoxia	3.95E-02
146	GO:0010027: thylakoid membrane organization	3.95E-02
147	GO:0007166: cell surface receptor signaling pathway	4.17E-02
148	GO:0006470: protein dephosphorylation	4.17E-02
149	GO:0009627: systemic acquired resistance	4.27E-02
150	GO:0015995: chlorophyll biosynthetic process	4.44E-02
151	GO:0010411: xyloglucan metabolic process	4.44E-02
152	GO:0009817: defense response to fungus, incompatible interaction	4.77E-02
153	GO:0071555: cell wall organization	4.90E-02
154	GO:0010311: lateral root formation	4.94E-02
155	GO:0009832: plant-type cell wall biogenesis	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
7	GO:0019203: carbohydrate phosphatase activity	0.00E+00
8	GO:0001872: (1->3)-beta-D-glucan binding	3.35E-05
9	GO:0004519: endonuclease activity	1.01E-04
10	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.04E-04
11	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.04E-04
12	GO:0005227: calcium activated cation channel activity	3.04E-04
13	GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	3.04E-04
14	GO:0017169: CDP-alcohol phosphatidyltransferase activity	3.04E-04
15	GO:0050308: sugar-phosphatase activity	3.04E-04
16	GO:0042586: peptide deformylase activity	3.04E-04
17	GO:0052381: tRNA dimethylallyltransferase activity	3.04E-04
18	GO:0008568: microtubule-severing ATPase activity	3.04E-04
19	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.57E-04
20	GO:0016415: octanoyltransferase activity	6.66E-04
21	GO:0008805: carbon-monoxide oxygenase activity	6.66E-04
22	GO:0004412: homoserine dehydrogenase activity	6.66E-04
23	GO:0050017: L-3-cyanoalanine synthase activity	6.66E-04
24	GO:0017118: lipoyltransferase activity	6.66E-04
25	GO:0030247: polysaccharide binding	7.89E-04
26	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.08E-03
27	GO:0003746: translation elongation factor activity	1.20E-03
28	GO:0052654: L-leucine transaminase activity	1.55E-03
29	GO:0080031: methyl salicylate esterase activity	1.55E-03
30	GO:0052655: L-valine transaminase activity	1.55E-03
31	GO:0004072: aspartate kinase activity	1.55E-03
32	GO:0043047: single-stranded telomeric DNA binding	1.55E-03
33	GO:0052656: L-isoleucine transaminase activity	1.55E-03
34	GO:0043621: protein self-association	1.83E-03
35	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.92E-03
36	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.07E-03
37	GO:0004084: branched-chain-amino-acid transaminase activity	2.07E-03
38	GO:0019199: transmembrane receptor protein kinase activity	2.07E-03
39	GO:0003723: RNA binding	2.39E-03
40	GO:0008725: DNA-3-methyladenine glycosylase activity	2.65E-03
41	GO:2001070: starch binding	3.27E-03
42	GO:0030983: mismatched DNA binding	3.27E-03
43	GO:0080030: methyl indole-3-acetate esterase activity	3.27E-03
44	GO:0004332: fructose-bisphosphate aldolase activity	3.27E-03
45	GO:0004709: MAP kinase kinase kinase activity	3.27E-03
46	GO:0004784: superoxide dismutase activity	3.27E-03
47	GO:0004124: cysteine synthase activity	3.93E-03
48	GO:0051015: actin filament binding	4.04E-03
49	GO:0042162: telomeric DNA binding	4.64E-03
50	GO:0004161: dimethylallyltranstransferase activity	9.71E-03
51	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.71E-03
52	GO:0015095: magnesium ion transmembrane transporter activity	1.17E-02
53	GO:0005262: calcium channel activity	1.17E-02
54	GO:0015266: protein channel activity	1.17E-02
55	GO:0003774: motor activity	1.27E-02
56	GO:0008266: poly(U) RNA binding	1.27E-02
57	GO:0008146: sulfotransferase activity	1.38E-02
58	GO:0008061: chitin binding	1.38E-02
59	GO:0003712: transcription cofactor activity	1.38E-02
60	GO:0051536: iron-sulfur cluster binding	1.60E-02
61	GO:0005528: FK506 binding	1.60E-02
62	GO:0051087: chaperone binding	1.72E-02
63	GO:0003964: RNA-directed DNA polymerase activity	1.84E-02
64	GO:0004871: signal transducer activity	2.32E-02
65	GO:0042803: protein homodimerization activity	2.32E-02
66	GO:0016758: transferase activity, transferring hexosyl groups	2.58E-02
67	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.64E-02
68	GO:0019843: rRNA binding	2.65E-02
69	GO:0016853: isomerase activity	2.76E-02
70	GO:0010181: FMN binding	2.76E-02
71	GO:0050662: coenzyme binding	2.76E-02
72	GO:0019901: protein kinase binding	2.90E-02
73	GO:0004872: receptor activity	2.90E-02
74	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.04E-02
75	GO:0004518: nuclease activity	3.19E-02
76	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.40E-02
77	GO:0003684: damaged DNA binding	3.49E-02
78	GO:0005200: structural constituent of cytoskeleton	3.64E-02
79	GO:0016413: O-acetyltransferase activity	3.79E-02
80	GO:0016597: amino acid binding	3.79E-02
81	GO:0008017: microtubule binding	3.82E-02
82	GO:0015250: water channel activity	3.95E-02
83	GO:0008289: lipid binding	4.28E-02
84	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.44E-02
85	GO:0004721: phosphoprotein phosphatase activity	4.44E-02
86	GO:0016301: kinase activity	4.49E-02
87	GO:0008236: serine-type peptidase activity	4.60E-02
88	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.77E-02
89	GO:0004674: protein serine/threonine kinase activity	4.84E-02
90	GO:0015238: drug transmembrane transporter activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0009507: chloroplast	7.21E-10
3	GO:0009570: chloroplast stroma	2.09E-04
4	GO:0009941: chloroplast envelope	4.90E-04
5	GO:0005697: telomerase holoenzyme complex	6.66E-04
6	GO:0030139: endocytic vesicle	1.08E-03
7	GO:0042646: plastid nucleoid	1.55E-03
8	GO:0032585: multivesicular body membrane	1.55E-03
9	GO:0032432: actin filament bundle	1.55E-03
10	GO:0009526: plastid envelope	2.07E-03
11	GO:0015629: actin cytoskeleton	2.10E-03
12	GO:0055035: plastid thylakoid membrane	2.65E-03
13	GO:0031969: chloroplast membrane	4.06E-03
14	GO:0009986: cell surface	4.64E-03
15	GO:0042807: central vacuole	4.64E-03
16	GO:0009543: chloroplast thylakoid lumen	5.05E-03
17	GO:0000326: protein storage vacuole	6.18E-03
18	GO:0000784: nuclear chromosome, telomeric region	6.18E-03
19	GO:0046930: pore complex	6.18E-03
20	GO:0009534: chloroplast thylakoid	6.87E-03
21	GO:0042644: chloroplast nucleoid	7.01E-03
22	GO:0031090: organelle membrane	7.01E-03
23	GO:0016459: myosin complex	8.77E-03
24	GO:0005884: actin filament	9.71E-03
25	GO:0031977: thylakoid lumen	1.01E-02
26	GO:0000311: plastid large ribosomal subunit	1.07E-02
27	GO:0046658: anchored component of plasma membrane	1.09E-02
28	GO:0030095: chloroplast photosystem II	1.27E-02
29	GO:0005874: microtubule	1.67E-02
30	GO:0009654: photosystem II oxygen evolving complex	1.72E-02
31	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.22E-02
32	GO:0009579: thylakoid	2.28E-02
33	GO:0005871: kinesin complex	2.35E-02
34	GO:0005623: cell	2.72E-02
35	GO:0019898: extrinsic component of membrane	2.90E-02
36	GO:0031965: nuclear membrane	2.90E-02
37	GO:0043231: intracellular membrane-bounded organelle	3.21E-02
38	GO:0005886: plasma membrane	3.31E-02
39	GO:0005759: mitochondrial matrix	3.32E-02
40	GO:0009295: nucleoid	3.64E-02
41	GO:0030529: intracellular ribonucleoprotein complex	3.95E-02
42	GO:0009707: chloroplast outer membrane	4.77E-02