co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
8	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
9	GO:0002184: cytoplasmic translational termination	0.00E+00
10	GO:0017038: protein import	0.00E+00
11	GO:0030155: regulation of cell adhesion	0.00E+00
12	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
13	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
14	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
15	GO:0009658: chloroplast organization	3.07E-07
16	GO:1901259: chloroplast rRNA processing	5.15E-07
17	GO:0015995: chlorophyll biosynthetic process	9.64E-06
18	GO:0018026: peptidyl-lysine monomethylation	2.31E-05
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.31E-05
20	GO:0010027: thylakoid membrane organization	7.44E-05
21	GO:0032544: plastid translation	9.71E-05
22	GO:0009657: plastid organization	9.71E-05
23	GO:0046739: transport of virus in multicellular host	1.54E-04
24	GO:0022622: root system development	2.59E-04
25	GO:0005983: starch catabolic process	3.14E-04
26	GO:0016123: xanthophyll biosynthetic process	3.89E-04
27	GO:0010020: chloroplast fission	4.40E-04
28	GO:0042793: transcription from plastid promoter	5.40E-04
29	GO:0042372: phylloquinone biosynthetic process	7.14E-04
30	GO:0005980: glycogen catabolic process	7.37E-04
31	GO:0030198: extracellular matrix organization	7.37E-04
32	GO:0010480: microsporocyte differentiation	7.37E-04
33	GO:0006659: phosphatidylserine biosynthetic process	7.37E-04
34	GO:1904964: positive regulation of phytol biosynthetic process	7.37E-04
35	GO:0042759: long-chain fatty acid biosynthetic process	7.37E-04
36	GO:0042371: vitamin K biosynthetic process	7.37E-04
37	GO:0043686: co-translational protein modification	7.37E-04
38	GO:0043007: maintenance of rDNA	7.37E-04
39	GO:1902458: positive regulation of stomatal opening	7.37E-04
40	GO:0015904: tetracycline transport	7.37E-04
41	GO:0005991: trehalose metabolic process	7.37E-04
42	GO:0048363: mucilage pectin metabolic process	7.37E-04
43	GO:0070509: calcium ion import	7.37E-04
44	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	7.37E-04
45	GO:0000025: maltose catabolic process	7.37E-04
46	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	7.37E-04
47	GO:1904966: positive regulation of vitamin E biosynthetic process	7.37E-04
48	GO:0010442: guard cell morphogenesis	7.37E-04
49	GO:0010063: positive regulation of trichoblast fate specification	7.37E-04
50	GO:0009451: RNA modification	8.13E-04
51	GO:0032880: regulation of protein localization	9.10E-04
52	GO:0048437: floral organ development	9.10E-04
53	GO:0046620: regulation of organ growth	1.13E-03
54	GO:0010497: plasmodesmata-mediated intercellular transport	1.38E-03
55	GO:0071668: plant-type cell wall assembly	1.59E-03
56	GO:1904143: positive regulation of carotenoid biosynthetic process	1.59E-03
57	GO:0006423: cysteinyl-tRNA aminoacylation	1.59E-03
58	GO:0001682: tRNA 5'-leader removal	1.59E-03
59	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.59E-03
60	GO:0006568: tryptophan metabolic process	1.59E-03
61	GO:2000123: positive regulation of stomatal complex development	1.59E-03
62	GO:0010024: phytochromobilin biosynthetic process	1.59E-03
63	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.59E-03
64	GO:0052541: plant-type cell wall cellulose metabolic process	1.59E-03
65	GO:0019388: galactose catabolic process	1.59E-03
66	GO:0060359: response to ammonium ion	1.59E-03
67	GO:0048255: mRNA stabilization	1.59E-03
68	GO:0010182: sugar mediated signaling pathway	1.63E-03
69	GO:0009958: positive gravitropism	1.63E-03
70	GO:0031425: chloroplast RNA processing	1.96E-03
71	GO:0006788: heme oxidation	2.63E-03
72	GO:0043157: response to cation stress	2.63E-03
73	GO:0033591: response to L-ascorbic acid	2.63E-03
74	GO:0048281: inflorescence morphogenesis	2.63E-03
75	GO:0006954: inflammatory response	2.63E-03
76	GO:0006415: translational termination	2.66E-03
77	GO:0019684: photosynthesis, light reaction	2.66E-03
78	GO:0009773: photosynthetic electron transport in photosystem I	2.66E-03
79	GO:0040008: regulation of growth	2.81E-03
80	GO:0006006: glucose metabolic process	3.47E-03
81	GO:2000012: regulation of auxin polar transport	3.47E-03
82	GO:0015979: photosynthesis	3.71E-03
83	GO:0043572: plastid fission	3.83E-03
84	GO:0031048: chromatin silencing by small RNA	3.83E-03
85	GO:0010148: transpiration	3.83E-03
86	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	3.83E-03
87	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.83E-03
88	GO:0016556: mRNA modification	3.83E-03
89	GO:0006166: purine ribonucleoside salvage	3.83E-03
90	GO:0010071: root meristem specification	3.83E-03
91	GO:0007231: osmosensory signaling pathway	3.83E-03
92	GO:0009102: biotin biosynthetic process	3.83E-03
93	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.83E-03
94	GO:0009647: skotomorphogenesis	3.83E-03
95	GO:0010306: rhamnogalacturonan II biosynthetic process	3.83E-03
96	GO:0010731: protein glutathionylation	3.83E-03
97	GO:0019048: modulation by virus of host morphology or physiology	3.83E-03
98	GO:0009590: detection of gravity	3.83E-03
99	GO:0006168: adenine salvage	3.83E-03
100	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.83E-03
101	GO:0010207: photosystem II assembly	3.92E-03
102	GO:0070588: calcium ion transmembrane transport	4.41E-03
103	GO:0009817: defense response to fungus, incompatible interaction	4.85E-03
104	GO:0006071: glycerol metabolic process	4.92E-03
105	GO:0009813: flavonoid biosynthetic process	5.17E-03
106	GO:0051567: histone H3-K9 methylation	5.18E-03
107	GO:0010109: regulation of photosynthesis	5.18E-03
108	GO:0010107: potassium ion import	5.18E-03
109	GO:0033500: carbohydrate homeostasis	5.18E-03
110	GO:0009765: photosynthesis, light harvesting	5.18E-03
111	GO:2000038: regulation of stomatal complex development	5.18E-03
112	GO:0006021: inositol biosynthetic process	5.18E-03
113	GO:0048527: lateral root development	5.84E-03
114	GO:0006418: tRNA aminoacylation for protein translation	6.04E-03
115	GO:0061077: chaperone-mediated protein folding	6.64E-03
116	GO:0006564: L-serine biosynthetic process	6.66E-03
117	GO:0010236: plastoquinone biosynthetic process	6.66E-03
118	GO:0045038: protein import into chloroplast thylakoid membrane	6.66E-03
119	GO:0016120: carotene biosynthetic process	6.66E-03
120	GO:0031365: N-terminal protein amino acid modification	6.66E-03
121	GO:0044209: AMP salvage	6.66E-03
122	GO:0000304: response to singlet oxygen	6.66E-03
123	GO:0010375: stomatal complex patterning	6.66E-03
124	GO:0032543: mitochondrial translation	6.66E-03
125	GO:0098719: sodium ion import across plasma membrane	6.66E-03
126	GO:0009416: response to light stimulus	6.79E-03
127	GO:0006730: one-carbon metabolic process	7.29E-03
128	GO:0006631: fatty acid metabolic process	8.21E-03
129	GO:0016458: gene silencing	8.27E-03
130	GO:0032973: amino acid export	8.27E-03
131	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.27E-03
132	GO:0000741: karyogamy	8.27E-03
133	GO:0010405: arabinogalactan protein metabolic process	8.27E-03
134	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	8.27E-03
135	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.27E-03
136	GO:0009959: negative gravitropism	8.27E-03
137	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	8.27E-03
138	GO:0033365: protein localization to organelle	8.27E-03
139	GO:0016554: cytidine to uridine editing	8.27E-03
140	GO:0009793: embryo development ending in seed dormancy	8.42E-03
141	GO:0006508: proteolysis	8.81E-03
142	GO:0009790: embryo development	8.98E-03
143	GO:0016117: carotenoid biosynthetic process	9.41E-03
144	GO:0008284: positive regulation of cell proliferation	9.41E-03
145	GO:0042026: protein refolding	1.00E-02
146	GO:0030488: tRNA methylation	1.00E-02
147	GO:2000033: regulation of seed dormancy process	1.00E-02
148	GO:0080086: stamen filament development	1.00E-02
149	GO:0009955: adaxial/abaxial pattern specification	1.00E-02
150	GO:0006458: 'de novo' protein folding	1.00E-02
151	GO:0017148: negative regulation of translation	1.00E-02
152	GO:0048280: vesicle fusion with Golgi apparatus	1.00E-02
153	GO:0006662: glycerol ether metabolic process	1.10E-02
154	GO:0010197: polar nucleus fusion	1.10E-02
155	GO:0010305: leaf vascular tissue pattern formation	1.10E-02
156	GO:0006855: drug transmembrane transport	1.11E-02
157	GO:0009646: response to absence of light	1.18E-02
158	GO:0010103: stomatal complex morphogenesis	1.19E-02
159	GO:0048528: post-embryonic root development	1.19E-02
160	GO:0009772: photosynthetic electron transport in photosystem II	1.19E-02
161	GO:0043090: amino acid import	1.19E-02
162	GO:0070370: cellular heat acclimation	1.19E-02
163	GO:0010444: guard mother cell differentiation	1.19E-02
164	GO:0019252: starch biosynthetic process	1.27E-02
165	GO:2000070: regulation of response to water deprivation	1.39E-02
166	GO:0055075: potassium ion homeostasis	1.39E-02
167	GO:0006353: DNA-templated transcription, termination	1.39E-02
168	GO:0070413: trehalose metabolism in response to stress	1.39E-02
169	GO:0000105: histidine biosynthetic process	1.39E-02
170	GO:0009231: riboflavin biosynthetic process	1.39E-02
171	GO:0007155: cell adhesion	1.39E-02
172	GO:0048564: photosystem I assembly	1.39E-02
173	GO:0001522: pseudouridine synthesis	1.39E-02
174	GO:0005978: glycogen biosynthetic process	1.39E-02
175	GO:0006605: protein targeting	1.39E-02
176	GO:0010078: maintenance of root meristem identity	1.39E-02
177	GO:0032502: developmental process	1.46E-02
178	GO:0010583: response to cyclopentenone	1.46E-02
179	GO:0006526: arginine biosynthetic process	1.59E-02
180	GO:0043562: cellular response to nitrogen levels	1.59E-02
181	GO:0001558: regulation of cell growth	1.59E-02
182	GO:0015996: chlorophyll catabolic process	1.59E-02
183	GO:0007186: G-protein coupled receptor signaling pathway	1.59E-02
184	GO:0009733: response to auxin	1.63E-02
185	GO:0048367: shoot system development	1.72E-02
186	GO:0048507: meristem development	1.81E-02
187	GO:0000902: cell morphogenesis	1.81E-02
188	GO:0046685: response to arsenic-containing substance	1.81E-02
189	GO:0080144: amino acid homeostasis	1.81E-02
190	GO:0090333: regulation of stomatal closure	1.81E-02
191	GO:0046916: cellular transition metal ion homeostasis	1.81E-02
192	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.04E-02
193	GO:0051453: regulation of intracellular pH	2.04E-02
194	GO:0009638: phototropism	2.04E-02
195	GO:0043067: regulation of programmed cell death	2.04E-02
196	GO:0006779: porphyrin-containing compound biosynthetic process	2.04E-02
197	GO:0009098: leucine biosynthetic process	2.04E-02
198	GO:1900865: chloroplast RNA modification	2.04E-02
199	GO:0009742: brassinosteroid mediated signaling pathway	2.25E-02
200	GO:0006782: protoporphyrinogen IX biosynthetic process	2.28E-02
201	GO:0030422: production of siRNA involved in RNA interference	2.28E-02
202	GO:0045036: protein targeting to chloroplast	2.28E-02
203	GO:0009641: shade avoidance	2.28E-02
204	GO:0010162: seed dormancy process	2.28E-02
205	GO:0006896: Golgi to vacuole transport	2.28E-02
206	GO:0018119: peptidyl-cysteine S-nitrosylation	2.53E-02
207	GO:0048229: gametophyte development	2.53E-02
208	GO:0009684: indoleacetic acid biosynthetic process	2.53E-02
209	GO:0010015: root morphogenesis	2.53E-02
210	GO:0009089: lysine biosynthetic process via diaminopimelate	2.53E-02
211	GO:0009073: aromatic amino acid family biosynthetic process	2.53E-02
212	GO:0006816: calcium ion transport	2.53E-02
213	GO:0048481: plant ovule development	2.59E-02
214	GO:0055114: oxidation-reduction process	2.76E-02
215	GO:0016024: CDP-diacylglycerol biosynthetic process	2.79E-02
216	GO:0045037: protein import into chloroplast stroma	2.79E-02
217	GO:0010102: lateral root morphogenesis	3.05E-02
218	GO:0050826: response to freezing	3.05E-02
219	GO:0009718: anthocyanin-containing compound biosynthetic process	3.05E-02
220	GO:0010075: regulation of meristem growth	3.05E-02
221	GO:0009767: photosynthetic electron transport chain	3.05E-02
222	GO:0030048: actin filament-based movement	3.05E-02
223	GO:0010588: cotyledon vascular tissue pattern formation	3.05E-02
224	GO:0010628: positive regulation of gene expression	3.05E-02
225	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.24E-02
226	GO:0045087: innate immune response	3.28E-02
227	GO:0016051: carbohydrate biosynthetic process	3.28E-02
228	GO:0009266: response to temperature stimulus	3.33E-02
229	GO:0009934: regulation of meristem structural organization	3.33E-02
230	GO:0048467: gynoecium development	3.33E-02
231	GO:0010143: cutin biosynthetic process	3.33E-02
232	GO:0009734: auxin-activated signaling pathway	3.36E-02
233	GO:0034599: cellular response to oxidative stress	3.43E-02
234	GO:0010030: positive regulation of seed germination	3.61E-02
235	GO:0019853: L-ascorbic acid biosynthetic process	3.61E-02
236	GO:0000162: tryptophan biosynthetic process	3.90E-02
237	GO:0010025: wax biosynthetic process	3.90E-02
238	GO:0005992: trehalose biosynthetic process	4.20E-02
239	GO:0009944: polarity specification of adaxial/abaxial axis	4.20E-02
240	GO:0009640: photomorphogenesis	4.22E-02
241	GO:0007017: microtubule-based process	4.50E-02
242	GO:0051302: regulation of cell division	4.50E-02
243	GO:0019953: sexual reproduction	4.50E-02
244	GO:0010026: trichome differentiation	4.50E-02
245	GO:0048511: rhythmic process	4.81E-02
246	GO:0031408: oxylipin biosynthetic process	4.81E-02
247	GO:0019915: lipid storage	4.81E-02
248	GO:0006306: DNA methylation	4.81E-02
249	GO:0007166: cell surface receptor signaling pathway	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0004823: leucine-tRNA ligase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0051060: pullulanase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
10	GO:0005201: extracellular matrix structural constituent	0.00E+00
11	GO:0004076: biotin synthase activity	0.00E+00
12	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
13	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
14	GO:0010303: limit dextrinase activity	0.00E+00
15	GO:0045430: chalcone isomerase activity	4.75E-06
16	GO:0016630: protochlorophyllide reductase activity	2.31E-05
17	GO:0002161: aminoacyl-tRNA editing activity	7.44E-05
18	GO:0005504: fatty acid binding	7.44E-05
19	GO:0043023: ribosomal large subunit binding	1.54E-04
20	GO:0016149: translation release factor activity, codon specific	1.54E-04
21	GO:0016279: protein-lysine N-methyltransferase activity	2.59E-04
22	GO:0008266: poly(U) RNA binding	4.40E-04
23	GO:0008237: metallopeptidase activity	4.80E-04
24	GO:0005528: FK506 binding	6.76E-04
25	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	7.37E-04
26	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	7.37E-04
27	GO:0042586: peptide deformylase activity	7.37E-04
28	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	7.37E-04
29	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	7.37E-04
30	GO:0050139: nicotinate-N-glucosyltransferase activity	7.37E-04
31	GO:0051777: ent-kaurenoate oxidase activity	7.37E-04
32	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.37E-04
33	GO:0004856: xylulokinase activity	7.37E-04
34	GO:0004134: 4-alpha-glucanotransferase activity	7.37E-04
35	GO:0004645: phosphorylase activity	7.37E-04
36	GO:0008184: glycogen phosphorylase activity	7.37E-04
37	GO:0009374: biotin binding	7.37E-04
38	GO:0019203: carbohydrate phosphatase activity	7.37E-04
39	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	7.37E-04
40	GO:0050308: sugar-phosphatase activity	7.37E-04
41	GO:0005080: protein kinase C binding	7.37E-04
42	GO:0003723: RNA binding	7.63E-04
43	GO:0004176: ATP-dependent peptidase activity	8.68E-04
44	GO:0004222: metalloendopeptidase activity	1.01E-03
45	GO:0008493: tetracycline transporter activity	1.59E-03
46	GO:0004512: inositol-3-phosphate synthase activity	1.59E-03
47	GO:0003852: 2-isopropylmalate synthase activity	1.59E-03
48	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.59E-03
49	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	1.59E-03
50	GO:0004617: phosphoglycerate dehydrogenase activity	1.59E-03
51	GO:0004817: cysteine-tRNA ligase activity	1.59E-03
52	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	1.59E-03
53	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.59E-03
54	GO:0004614: phosphoglucomutase activity	1.59E-03
55	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.59E-03
56	GO:0003747: translation release factor activity	1.65E-03
57	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.65E-03
58	GO:0019843: rRNA binding	1.72E-03
59	GO:0004519: endonuclease activity	2.33E-03
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.34E-03
61	GO:0004751: ribose-5-phosphate isomerase activity	2.63E-03
62	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.63E-03
63	GO:0004148: dihydrolipoyl dehydrogenase activity	2.63E-03
64	GO:0016805: dipeptidase activity	2.63E-03
65	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.63E-03
66	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.63E-03
67	GO:0004180: carboxypeptidase activity	2.63E-03
68	GO:0070330: aromatase activity	2.63E-03
69	GO:0003913: DNA photolyase activity	2.63E-03
70	GO:0031072: heat shock protein binding	3.47E-03
71	GO:0005262: calcium channel activity	3.47E-03
72	GO:0035197: siRNA binding	3.83E-03
73	GO:0016851: magnesium chelatase activity	3.83E-03
74	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	3.83E-03
75	GO:0003999: adenine phosphoribosyltransferase activity	3.83E-03
76	GO:0008083: growth factor activity	3.92E-03
77	GO:0015238: drug transmembrane transporter activity	5.17E-03
78	GO:0042277: peptide binding	5.18E-03
79	GO:0004392: heme oxygenase (decyclizing) activity	5.18E-03
80	GO:0019199: transmembrane receptor protein kinase activity	5.18E-03
81	GO:0043495: protein anchor	5.18E-03
82	GO:0004659: prenyltransferase activity	5.18E-03
83	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.18E-03
84	GO:0003924: GTPase activity	6.17E-03
85	GO:0016773: phosphotransferase activity, alcohol group as acceptor	6.66E-03
86	GO:0003989: acetyl-CoA carboxylase activity	6.66E-03
87	GO:0003959: NADPH dehydrogenase activity	6.66E-03
88	GO:0016846: carbon-sulfur lyase activity	6.66E-03
89	GO:0018685: alkane 1-monooxygenase activity	6.66E-03
90	GO:0015081: sodium ion transmembrane transporter activity	8.27E-03
91	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	8.27E-03
92	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	8.27E-03
93	GO:2001070: starch binding	8.27E-03
94	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.27E-03
95	GO:0004526: ribonuclease P activity	8.27E-03
96	GO:0004556: alpha-amylase activity	8.27E-03
97	GO:0016208: AMP binding	8.27E-03
98	GO:0047134: protein-disulfide reductase activity	9.41E-03
99	GO:0004812: aminoacyl-tRNA ligase activity	9.41E-03
100	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.00E-02
101	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.00E-02
102	GO:0052689: carboxylic ester hydrolase activity	1.14E-02
103	GO:0004791: thioredoxin-disulfide reductase activity	1.18E-02
104	GO:0019899: enzyme binding	1.19E-02
105	GO:0004033: aldo-keto reductase (NADP) activity	1.39E-02
106	GO:0003824: catalytic activity	1.54E-02
107	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.55E-02
108	GO:0046914: transition metal ion binding	1.59E-02
109	GO:0008173: RNA methyltransferase activity	1.59E-02
110	GO:0016791: phosphatase activity	1.66E-02
111	GO:0005200: structural constituent of cytoskeleton	1.76E-02
112	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.81E-02
113	GO:0016597: amino acid binding	1.87E-02
114	GO:0005525: GTP binding	1.96E-02
115	GO:0051082: unfolded protein binding	2.09E-02
116	GO:0015020: glucuronosyltransferase activity	2.28E-02
117	GO:0016788: hydrolase activity, acting on ester bonds	2.30E-02
118	GO:0015386: potassium:proton antiporter activity	2.53E-02
119	GO:0008559: xenobiotic-transporting ATPase activity	2.53E-02
120	GO:0044183: protein binding involved in protein folding	2.53E-02
121	GO:0047372: acylglycerol lipase activity	2.53E-02
122	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.59E-02
123	GO:0016758: transferase activity, transferring hexosyl groups	2.69E-02
124	GO:0000049: tRNA binding	2.79E-02
125	GO:0008378: galactosyltransferase activity	2.79E-02
126	GO:0004521: endoribonuclease activity	2.79E-02
127	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.87E-02
128	GO:0015266: protein channel activity	3.05E-02
129	GO:0004089: carbonate dehydratase activity	3.05E-02
130	GO:0009982: pseudouridine synthase activity	3.05E-02
131	GO:0003725: double-stranded RNA binding	3.05E-02
132	GO:0003774: motor activity	3.33E-02
133	GO:0008146: sulfotransferase activity	3.61E-02
134	GO:0019825: oxygen binding	3.63E-02
135	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.80E-02
136	GO:0015297: antiporter activity	3.91E-02
137	GO:0004364: glutathione transferase activity	4.06E-02
138	GO:0043424: protein histidine kinase binding	4.50E-02
139	GO:0035091: phosphatidylinositol binding	4.56E-02
140	GO:0005198: structural molecule activity	4.74E-02
141	GO:0033612: receptor serine/threonine kinase binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.35E-39
2	GO:0009570: chloroplast stroma	5.89E-28
3	GO:0009941: chloroplast envelope	1.45E-12
4	GO:0009534: chloroplast thylakoid	4.27E-10
5	GO:0009535: chloroplast thylakoid membrane	2.56E-09
6	GO:0009295: nucleoid	2.07E-07
7	GO:0009508: plastid chromosome	8.20E-07
8	GO:0031969: chloroplast membrane	7.02E-06
9	GO:0009543: chloroplast thylakoid lumen	7.35E-05
10	GO:0009579: thylakoid	1.30E-04
11	GO:0030529: intracellular ribonucleoprotein complex	5.76E-04
12	GO:0009344: nitrite reductase complex [NAD(P)H]	7.37E-04
13	GO:0009547: plastid ribosome	7.37E-04
14	GO:0009536: plastid	1.33E-03
15	GO:0046658: anchored component of plasma membrane	1.35E-03
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.59E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.65E-03
18	GO:0009317: acetyl-CoA carboxylase complex	2.63E-03
19	GO:0009528: plastid inner membrane	2.63E-03
20	GO:0010007: magnesium chelatase complex	2.63E-03
21	GO:0010319: stromule	2.96E-03
22	GO:0015630: microtubule cytoskeleton	3.83E-03
23	GO:0042646: plastid nucleoid	3.83E-03
24	GO:0005719: nuclear euchromatin	3.83E-03
25	GO:0009527: plastid outer membrane	5.18E-03
26	GO:0009654: photosystem II oxygen evolving complex	6.04E-03
27	GO:0042651: thylakoid membrane	6.04E-03
28	GO:0009532: plastid stroma	6.64E-03
29	GO:0031977: thylakoid lumen	8.21E-03
30	GO:0009533: chloroplast stromal thylakoid	1.19E-02
31	GO:0019898: extrinsic component of membrane	1.27E-02
32	GO:0012507: ER to Golgi transport vesicle membrane	1.39E-02
33	GO:0009501: amyloplast	1.39E-02
34	GO:0016021: integral component of membrane	1.42E-02
35	GO:0005886: plasma membrane	1.77E-02
36	GO:0042644: chloroplast nucleoid	1.81E-02
37	GO:0005763: mitochondrial small ribosomal subunit	1.81E-02
38	GO:0015030: Cajal body	2.04E-02
39	GO:0009706: chloroplast inner membrane	2.09E-02
40	GO:0043231: intracellular membrane-bounded organelle	2.23E-02
41	GO:0000418: DNA-directed RNA polymerase IV complex	2.28E-02
42	GO:0016459: myosin complex	2.28E-02
43	GO:0009707: chloroplast outer membrane	2.59E-02
44	GO:0000311: plastid large ribosomal subunit	2.79E-02
45	GO:0030095: chloroplast photosystem II	3.33E-02
46	GO:0043234: protein complex	3.90E-02
47	GO:0031902: late endosome membrane	3.90E-02
48	GO:0031225: anchored component of membrane	4.29E-02