co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0009733: response to auxin	9.94E-05
4	GO:0032958: inositol phosphate biosynthetic process	1.86E-04
5	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.86E-04
6	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.86E-04
7	GO:0061062: regulation of nematode larval development	4.19E-04
8	GO:0010024: phytochromobilin biosynthetic process	4.19E-04
9	GO:0006650: glycerophospholipid metabolic process	4.19E-04
10	GO:0006863: purine nucleobase transport	6.69E-04
11	GO:0071398: cellular response to fatty acid	6.84E-04
12	GO:0048575: short-day photoperiodism, flowering	6.84E-04
13	GO:0090506: axillary shoot meristem initiation	6.84E-04
14	GO:0010321: regulation of vegetative phase change	9.77E-04
15	GO:0006020: inositol metabolic process	9.77E-04
16	GO:0009686: gibberellin biosynthetic process	1.06E-03
17	GO:0042991: transcription factor import into nucleus	1.29E-03
18	GO:0048825: cotyledon development	1.65E-03
19	GO:0048497: maintenance of floral organ identity	1.65E-03
20	GO:0009107: lipoate biosynthetic process	1.65E-03
21	GO:0045487: gibberellin catabolic process	1.65E-03
22	GO:1902456: regulation of stomatal opening	2.03E-03
23	GO:0003006: developmental process involved in reproduction	2.03E-03
24	GO:0010942: positive regulation of cell death	2.03E-03
25	GO:0010358: leaf shaping	2.03E-03
26	GO:0009913: epidermal cell differentiation	2.03E-03
27	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.43E-03
28	GO:0010019: chloroplast-nucleus signaling pathway	2.43E-03
29	GO:0040008: regulation of growth	2.91E-03
30	GO:0048573: photoperiodism, flowering	2.99E-03
31	GO:0006402: mRNA catabolic process	3.32E-03
32	GO:0009704: de-etiolation	3.32E-03
33	GO:0042255: ribosome assembly	3.32E-03
34	GO:0006353: DNA-templated transcription, termination	3.32E-03
35	GO:0006351: transcription, DNA-templated	3.42E-03
36	GO:0007186: G-protein coupled receptor signaling pathway	3.80E-03
37	GO:0009734: auxin-activated signaling pathway	4.20E-03
38	GO:0048589: developmental growth	4.30E-03
39	GO:0009056: catabolic process	4.30E-03
40	GO:0048507: meristem development	4.30E-03
41	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.36E-03
42	GO:0009641: shade avoidance	5.36E-03
43	GO:0042546: cell wall biogenesis	5.61E-03
44	GO:0009750: response to fructose	5.92E-03
45	GO:0010152: pollen maturation	6.51E-03
46	GO:0005983: starch catabolic process	6.51E-03
47	GO:0010582: floral meristem determinacy	6.51E-03
48	GO:0048366: leaf development	6.62E-03
49	GO:2000028: regulation of photoperiodism, flowering	7.11E-03
50	GO:0010588: cotyledon vascular tissue pattern formation	7.11E-03
51	GO:0010102: lateral root morphogenesis	7.11E-03
52	GO:0010207: photosystem II assembly	7.73E-03
53	GO:0010223: secondary shoot formation	7.73E-03
54	GO:0006302: double-strand break repair	7.73E-03
55	GO:0048467: gynoecium development	7.73E-03
56	GO:0009969: xyloglucan biosynthetic process	8.37E-03
57	GO:0048367: shoot system development	8.87E-03
58	GO:0045892: negative regulation of transcription, DNA-templated	9.07E-03
59	GO:0005992: trehalose biosynthetic process	9.71E-03
60	GO:0051321: meiotic cell cycle	1.11E-02
61	GO:0016114: terpenoid biosynthetic process	1.11E-02
62	GO:0048364: root development	1.23E-02
63	GO:0001944: vasculature development	1.26E-02
64	GO:0009693: ethylene biosynthetic process	1.26E-02
65	GO:0071215: cellular response to abscisic acid stimulus	1.26E-02
66	GO:0048443: stamen development	1.34E-02
67	GO:0080022: primary root development	1.50E-02
68	GO:0010087: phloem or xylem histogenesis	1.50E-02
69	GO:0010118: stomatal movement	1.50E-02
70	GO:0010182: sugar mediated signaling pathway	1.58E-02
71	GO:0009741: response to brassinosteroid	1.58E-02
72	GO:0010268: brassinosteroid homeostasis	1.58E-02
73	GO:0010305: leaf vascular tissue pattern formation	1.58E-02
74	GO:0009749: response to glucose	1.75E-02
75	GO:0008654: phospholipid biosynthetic process	1.75E-02
76	GO:0016132: brassinosteroid biosynthetic process	1.83E-02
77	GO:0071554: cell wall organization or biogenesis	1.83E-02
78	GO:0002229: defense response to oomycetes	1.83E-02
79	GO:0032502: developmental process	1.92E-02
80	GO:0010583: response to cyclopentenone	1.92E-02
81	GO:0009739: response to gibberellin	2.01E-02
82	GO:0006464: cellular protein modification process	2.10E-02
83	GO:0016125: sterol metabolic process	2.10E-02
84	GO:0019760: glucosinolate metabolic process	2.10E-02
85	GO:0009908: flower development	2.11E-02
86	GO:0016126: sterol biosynthetic process	2.38E-02
87	GO:0009416: response to light stimulus	2.40E-02
88	GO:0010411: xyloglucan metabolic process	2.67E-02
89	GO:0009826: unidimensional cell growth	2.68E-02
90	GO:0006355: regulation of transcription, DNA-templated	2.82E-02
91	GO:0009817: defense response to fungus, incompatible interaction	2.88E-02
92	GO:0048527: lateral root development	3.19E-02
93	GO:0009723: response to ethylene	3.22E-02
94	GO:0016567: protein ubiquitination	3.29E-02
95	GO:0009867: jasmonic acid mediated signaling pathway	3.40E-02
96	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.56E-02
97	GO:0006631: fatty acid metabolic process	3.85E-02
98	GO:0009744: response to sucrose	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
2	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.86E-04
5	GO:0010012: steroid 22-alpha hydroxylase activity	1.86E-04
6	GO:0000829: inositol heptakisphosphate kinase activity	1.86E-04
7	GO:0000828: inositol hexakisphosphate kinase activity	1.86E-04
8	GO:0019156: isoamylase activity	4.19E-04
9	GO:0017022: myosin binding	4.19E-04
10	GO:0017118: lipoyltransferase activity	4.19E-04
11	GO:0045543: gibberellin 2-beta-dioxygenase activity	4.19E-04
12	GO:0010296: prenylcysteine methylesterase activity	4.19E-04
13	GO:0016415: octanoyltransferase activity	4.19E-04
14	GO:0005345: purine nucleobase transmembrane transporter activity	8.15E-04
15	GO:0045544: gibberellin 20-oxidase activity	9.77E-04
16	GO:0000254: C-4 methylsterol oxidase activity	9.77E-04
17	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	9.77E-04
18	GO:0010011: auxin binding	1.29E-03
19	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.65E-03
20	GO:0008374: O-acyltransferase activity	1.65E-03
21	GO:0004871: signal transducer activity	1.94E-03
22	GO:0004556: alpha-amylase activity	2.03E-03
23	GO:0004709: MAP kinase kinase kinase activity	2.03E-03
24	GO:0016832: aldehyde-lyase activity	2.43E-03
25	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.30E-03
26	GO:0043565: sequence-specific DNA binding	4.47E-03
27	GO:0004805: trehalose-phosphatase activity	5.36E-03
28	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.25E-03
29	GO:0008378: galactosyltransferase activity	6.51E-03
30	GO:0003712: transcription cofactor activity	8.37E-03
31	GO:0031418: L-ascorbic acid binding	9.71E-03
32	GO:0033612: receptor serine/threonine kinase binding	1.11E-02
33	GO:0008408: 3'-5' exonuclease activity	1.11E-02
34	GO:0010333: terpene synthase activity	1.11E-02
35	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.33E-02
36	GO:0003727: single-stranded RNA binding	1.34E-02
37	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.48E-02
38	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.58E-02
39	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.83E-02
40	GO:0004518: nuclease activity	1.92E-02
41	GO:0016759: cellulose synthase activity	2.10E-02
42	GO:0016413: O-acetyltransferase activity	2.29E-02
43	GO:0004721: phosphoprotein phosphatase activity	2.67E-02
44	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.67E-02
45	GO:0008236: serine-type peptidase activity	2.78E-02
46	GO:0004672: protein kinase activity	3.05E-02
47	GO:0050897: cobalt ion binding	3.19E-02
48	GO:0030145: manganese ion binding	3.19E-02
49	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.19E-02
50	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.63E-02
51	GO:0003677: DNA binding	3.77E-02
52	GO:0042803: protein homodimerization activity	4.31E-02
53	GO:0043621: protein self-association	4.31E-02
54	GO:0004722: protein serine/threonine phosphatase activity	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0031224: intrinsic component of membrane	0.00E+00
3	GO:0000791: euchromatin	1.86E-04
4	GO:0030870: Mre11 complex	4.19E-04
5	GO:0009569: chloroplast starch grain	4.19E-04
6	GO:0000795: synaptonemal complex	1.65E-03
7	GO:0005634: nucleus	7.25E-03
8	GO:0030095: chloroplast photosystem II	7.73E-03
9	GO:0005875: microtubule associated complex	9.03E-03
10	GO:0009654: photosystem II oxygen evolving complex	1.04E-02
11	GO:0019898: extrinsic component of membrane	1.75E-02
12	GO:0009504: cell plate	1.75E-02
13	GO:0000785: chromatin	1.92E-02
14	GO:0030529: intracellular ribonucleoprotein complex	2.38E-02
15	GO:0031977: thylakoid lumen	3.85E-02
16	GO:0090406: pollen tube	4.08E-02