co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043972: histone H3-K23 acetylation	0.00E+00
2	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
3	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
4	GO:0032206: positive regulation of telomere maintenance	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0044154: histone H3-K14 acetylation	0.00E+00
8	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0006114: glycerol biosynthetic process	0.00E+00
11	GO:0000372: Group I intron splicing	0.00E+00
12	GO:0010239: chloroplast mRNA processing	3.50E-05
13	GO:0009793: embryo development ending in seed dormancy	3.95E-05
14	GO:0010158: abaxial cell fate specification	9.88E-05
15	GO:0016117: carotenoid biosynthetic process	2.57E-04
16	GO:0010080: regulation of floral meristem growth	3.11E-04
17	GO:0043087: regulation of GTPase activity	3.11E-04
18	GO:0043609: regulation of carbon utilization	3.11E-04
19	GO:0006436: tryptophanyl-tRNA aminoacylation	3.11E-04
20	GO:0000066: mitochondrial ornithine transport	3.11E-04
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.11E-04
22	GO:0043971: histone H3-K18 acetylation	3.11E-04
23	GO:0043489: RNA stabilization	3.11E-04
24	GO:0071482: cellular response to light stimulus	3.94E-04
25	GO:0000373: Group II intron splicing	4.73E-04
26	GO:0001736: establishment of planar polarity	6.81E-04
27	GO:0048255: mRNA stabilization	6.81E-04
28	GO:0006435: threonyl-tRNA aminoacylation	6.81E-04
29	GO:0045037: protein import into chloroplast stroma	8.60E-04
30	GO:0010582: floral meristem determinacy	8.60E-04
31	GO:0006094: gluconeogenesis	9.73E-04
32	GO:0080055: low-affinity nitrate transport	1.10E-03
33	GO:0006696: ergosterol biosynthetic process	1.10E-03
34	GO:0045910: negative regulation of DNA recombination	1.10E-03
35	GO:0006000: fructose metabolic process	1.10E-03
36	GO:0010022: meristem determinacy	1.10E-03
37	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.10E-03
38	GO:2001141: regulation of RNA biosynthetic process	1.58E-03
39	GO:0051513: regulation of monopolar cell growth	1.58E-03
40	GO:0007231: osmosensory signaling pathway	1.58E-03
41	GO:0051639: actin filament network formation	1.58E-03
42	GO:0034059: response to anoxia	1.58E-03
43	GO:0010306: rhamnogalacturonan II biosynthetic process	1.58E-03
44	GO:0009451: RNA modification	1.64E-03
45	GO:0051781: positive regulation of cell division	2.12E-03
46	GO:0051764: actin crosslink formation	2.12E-03
47	GO:0015846: polyamine transport	2.12E-03
48	GO:0033500: carbohydrate homeostasis	2.12E-03
49	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.17E-03
50	GO:0010236: plastoquinone biosynthetic process	2.71E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	2.71E-03
52	GO:1902183: regulation of shoot apical meristem development	2.71E-03
53	GO:0016123: xanthophyll biosynthetic process	2.71E-03
54	GO:0080110: sporopollenin biosynthetic process	2.71E-03
55	GO:0048868: pollen tube development	2.98E-03
56	GO:0009958: positive gravitropism	2.98E-03
57	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.35E-03
58	GO:0009942: longitudinal axis specification	4.03E-03
59	GO:1901259: chloroplast rRNA processing	4.03E-03
60	GO:0009828: plant-type cell wall loosening	4.45E-03
61	GO:0015693: magnesium ion transport	4.76E-03
62	GO:0009610: response to symbiotic fungus	4.76E-03
63	GO:0010050: vegetative phase change	4.76E-03
64	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.76E-03
65	GO:0048564: photosystem I assembly	5.53E-03
66	GO:0006353: DNA-templated transcription, termination	5.53E-03
67	GO:0070413: trehalose metabolism in response to stress	5.53E-03
68	GO:0009850: auxin metabolic process	5.53E-03
69	GO:0032544: plastid translation	6.33E-03
70	GO:0007389: pattern specification process	6.33E-03
71	GO:0044030: regulation of DNA methylation	6.33E-03
72	GO:0006002: fructose 6-phosphate metabolic process	6.33E-03
73	GO:0022900: electron transport chain	6.33E-03
74	GO:0009657: plastid organization	6.33E-03
75	GO:0006098: pentose-phosphate shunt	7.19E-03
76	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.19E-03
77	GO:2000024: regulation of leaf development	7.19E-03
78	GO:0045490: pectin catabolic process	7.97E-03
79	GO:0000723: telomere maintenance	8.07E-03
80	GO:0042761: very long-chain fatty acid biosynthetic process	8.07E-03
81	GO:0048829: root cap development	9.00E-03
82	GO:0006298: mismatch repair	9.00E-03
83	GO:0006949: syncytium formation	9.00E-03
84	GO:0006259: DNA metabolic process	9.00E-03
85	GO:0019538: protein metabolic process	9.00E-03
86	GO:0006535: cysteine biosynthetic process from serine	9.00E-03
87	GO:0006352: DNA-templated transcription, initiation	9.96E-03
88	GO:0009750: response to fructose	9.96E-03
89	GO:0048765: root hair cell differentiation	9.96E-03
90	GO:0006816: calcium ion transport	9.96E-03
91	GO:0006265: DNA topological change	9.96E-03
92	GO:0006839: mitochondrial transport	1.00E-02
93	GO:0009926: auxin polar transport	1.14E-02
94	GO:0010020: chloroplast fission	1.31E-02
95	GO:0010207: photosystem II assembly	1.31E-02
96	GO:0009658: chloroplast organization	1.39E-02
97	GO:0070588: calcium ion transmembrane transport	1.42E-02
98	GO:0080188: RNA-directed DNA methylation	1.42E-02
99	GO:0009664: plant-type cell wall organization	1.43E-02
100	GO:0010025: wax biosynthetic process	1.53E-02
101	GO:0051017: actin filament bundle assembly	1.65E-02
102	GO:0006289: nucleotide-excision repair	1.65E-02
103	GO:0005992: trehalose biosynthetic process	1.65E-02
104	GO:0019344: cysteine biosynthetic process	1.65E-02
105	GO:0007010: cytoskeleton organization	1.65E-02
106	GO:0009944: polarity specification of adaxial/abaxial axis	1.65E-02
107	GO:0010073: meristem maintenance	1.77E-02
108	GO:0006418: tRNA aminoacylation for protein translation	1.77E-02
109	GO:0080167: response to karrikin	1.83E-02
110	GO:0048316: seed development	1.88E-02
111	GO:0003333: amino acid transmembrane transport	1.89E-02
112	GO:0015992: proton transport	1.89E-02
113	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.91E-02
114	GO:0035428: hexose transmembrane transport	2.01E-02
115	GO:0016226: iron-sulfur cluster assembly	2.01E-02
116	GO:0009624: response to nematode	2.19E-02
117	GO:0010584: pollen exine formation	2.27E-02
118	GO:0006284: base-excision repair	2.27E-02
119	GO:0034220: ion transmembrane transport	2.55E-02
120	GO:0055085: transmembrane transport	2.63E-02
121	GO:0046323: glucose import	2.68E-02
122	GO:0010154: fruit development	2.68E-02
123	GO:0007018: microtubule-based movement	2.83E-02
124	GO:0007059: chromosome segregation	2.83E-02
125	GO:0009749: response to glucose	2.97E-02
126	GO:0006397: mRNA processing	3.14E-02
127	GO:0009790: embryo development	3.20E-02
128	GO:0007264: small GTPase mediated signal transduction	3.27E-02
129	GO:0010583: response to cyclopentenone	3.27E-02
130	GO:0006914: autophagy	3.58E-02
131	GO:0010252: auxin homeostasis	3.58E-02
132	GO:0001666: response to hypoxia	4.05E-02
133	GO:0009734: auxin-activated signaling pathway	4.54E-02
134	GO:0016311: dephosphorylation	4.72E-02
135	GO:0018298: protein-chromophore linkage	4.89E-02
136	GO:0009817: defense response to fungus, incompatible interaction	4.89E-02
137	GO:0048481: plant ovule development	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
9	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0019808: polyamine binding	0.00E+00
12	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
13	GO:0001872: (1->3)-beta-D-glucan binding	3.50E-05
14	GO:0030570: pectate lyase activity	2.04E-04
15	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	3.11E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.11E-04
17	GO:0004830: tryptophan-tRNA ligase activity	3.11E-04
18	GO:0005227: calcium activated cation channel activity	3.11E-04
19	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.11E-04
20	GO:0005290: L-histidine transmembrane transporter activity	3.11E-04
21	GO:0051996: squalene synthase activity	3.11E-04
22	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.81E-04
23	GO:0050017: L-3-cyanoalanine synthase activity	6.81E-04
24	GO:0004047: aminomethyltransferase activity	6.81E-04
25	GO:0000064: L-ornithine transmembrane transporter activity	6.81E-04
26	GO:0004829: threonine-tRNA ligase activity	6.81E-04
27	GO:0005096: GTPase activator activity	9.96E-04
28	GO:0016805: dipeptidase activity	1.10E-03
29	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.10E-03
30	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.10E-03
31	GO:0003913: DNA photolyase activity	1.10E-03
32	GO:0004148: dihydrolipoyl dehydrogenase activity	1.10E-03
33	GO:0015189: L-lysine transmembrane transporter activity	1.58E-03
34	GO:0015181: arginine transmembrane transporter activity	1.58E-03
35	GO:0043047: single-stranded telomeric DNA binding	1.58E-03
36	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.58E-03
37	GO:0003924: GTPase activity	1.92E-03
38	GO:0001053: plastid sigma factor activity	2.12E-03
39	GO:0010011: auxin binding	2.12E-03
40	GO:0016987: sigma factor activity	2.12E-03
41	GO:0010328: auxin influx transmembrane transporter activity	2.12E-03
42	GO:0010385: double-stranded methylated DNA binding	2.12E-03
43	GO:0070628: proteasome binding	2.12E-03
44	GO:0004519: endonuclease activity	2.22E-03
45	GO:0005471: ATP:ADP antiporter activity	2.71E-03
46	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.71E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	2.71E-03
48	GO:2001070: starch binding	3.35E-03
49	GO:0030983: mismatched DNA binding	3.35E-03
50	GO:0004332: fructose-bisphosphate aldolase activity	3.35E-03
51	GO:0031593: polyubiquitin binding	3.35E-03
52	GO:0005525: GTP binding	3.86E-03
53	GO:0004656: procollagen-proline 4-dioxygenase activity	4.03E-03
54	GO:0004124: cysteine synthase activity	4.03E-03
55	GO:0003684: damaged DNA binding	4.45E-03
56	GO:0042162: telomeric DNA binding	4.76E-03
57	GO:0004427: inorganic diphosphatase activity	4.76E-03
58	GO:0009881: photoreceptor activity	4.76E-03
59	GO:0008312: 7S RNA binding	5.53E-03
60	GO:0016829: lyase activity	5.84E-03
61	GO:0030247: polysaccharide binding	6.26E-03
62	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.33E-03
63	GO:0009672: auxin:proton symporter activity	8.07E-03
64	GO:0004805: trehalose-phosphatase activity	9.00E-03
65	GO:0004161: dimethylallyltranstransferase activity	9.96E-03
66	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.96E-03
67	GO:0015095: magnesium ion transmembrane transporter activity	1.20E-02
68	GO:0005262: calcium channel activity	1.20E-02
69	GO:0010329: auxin efflux transmembrane transporter activity	1.20E-02
70	GO:0043621: protein self-association	1.23E-02
71	GO:0008266: poly(U) RNA binding	1.31E-02
72	GO:0003723: RNA binding	1.40E-02
73	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.53E-02
74	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.53E-02
75	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.53E-02
76	GO:0031418: L-ascorbic acid binding	1.65E-02
77	GO:0043130: ubiquitin binding	1.65E-02
78	GO:0051087: chaperone binding	1.77E-02
79	GO:0043424: protein histidine kinase binding	1.77E-02
80	GO:0022891: substrate-specific transmembrane transporter activity	2.14E-02
81	GO:0004812: aminoacyl-tRNA ligase activity	2.41E-02
82	GO:0004402: histone acetyltransferase activity	2.55E-02
83	GO:0008536: Ran GTPase binding	2.68E-02
84	GO:0019843: rRNA binding	2.75E-02
85	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.78E-02
86	GO:0010181: FMN binding	2.83E-02
87	GO:0005355: glucose transmembrane transporter activity	2.83E-02
88	GO:0050662: coenzyme binding	2.83E-02
89	GO:0004518: nuclease activity	3.27E-02
90	GO:0015144: carbohydrate transmembrane transporter activity	3.28E-02
91	GO:0008565: protein transporter activity	3.28E-02
92	GO:0000156: phosphorelay response regulator activity	3.42E-02
93	GO:0051015: actin filament binding	3.42E-02
94	GO:0016791: phosphatase activity	3.58E-02
95	GO:0005351: sugar:proton symporter activity	3.70E-02
96	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.73E-02
97	GO:0008237: metallopeptidase activity	3.73E-02
98	GO:0015250: water channel activity	4.05E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0042597: periplasmic space	0.00E+00
4	GO:0009507: chloroplast	1.48E-11
5	GO:0009570: chloroplast stroma	5.63E-06
6	GO:0030529: intracellular ribonucleoprotein complex	6.71E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	6.81E-04
8	GO:0005697: telomerase holoenzyme complex	6.81E-04
9	GO:0009513: etioplast	6.81E-04
10	GO:0031969: chloroplast membrane	9.69E-04
11	GO:0005578: proteinaceous extracellular matrix	9.73E-04
12	GO:0009509: chromoplast	1.10E-03
13	GO:0009941: chloroplast envelope	1.42E-03
14	GO:0032432: actin filament bundle	1.58E-03
15	GO:0009532: plastid stroma	1.82E-03
16	GO:0030663: COPI-coated vesicle membrane	2.12E-03
17	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.12E-03
18	GO:0009535: chloroplast thylakoid membrane	3.79E-03
19	GO:0009986: cell surface	4.76E-03
20	GO:0042807: central vacuole	4.76E-03
21	GO:0009501: amyloplast	5.53E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.33E-03
23	GO:0000326: protein storage vacuole	6.33E-03
24	GO:0000784: nuclear chromosome, telomeric region	6.33E-03
25	GO:0005759: mitochondrial matrix	7.07E-03
26	GO:0030125: clathrin vesicle coat	9.00E-03
27	GO:0005884: actin filament	9.96E-03
28	GO:0000311: plastid large ribosomal subunit	1.10E-02
29	GO:0009574: preprophase band	1.20E-02
30	GO:0016602: CCAAT-binding factor complex	1.20E-02
31	GO:0009506: plasmodesma	1.31E-02
32	GO:0009706: chloroplast inner membrane	2.19E-02
33	GO:0009579: thylakoid	2.41E-02
34	GO:0005871: kinesin complex	2.41E-02
35	GO:0009536: plastid	2.52E-02
36	GO:0010287: plastoglobule	2.60E-02
37	GO:0009505: plant-type cell wall	2.62E-02
38	GO:0005886: plasma membrane	2.66E-02
39	GO:0005623: cell	2.82E-02
40	GO:0031965: nuclear membrane	2.97E-02
41	GO:0031225: anchored component of membrane	3.55E-02
42	GO:0009295: nucleoid	3.73E-02
43	GO:0005768: endosome	4.44E-02
44	GO:0009707: chloroplast outer membrane	4.89E-02
45	GO:0046658: anchored component of plasma membrane	4.98E-02