Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29905

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0048437: floral organ development1.59E-05
8GO:0010206: photosystem II repair3.41E-05
9GO:0010480: microsporocyte differentiation5.34E-05
10GO:0042371: vitamin K biosynthetic process5.34E-05
11GO:0043007: maintenance of rDNA5.34E-05
12GO:0006747: FAD biosynthetic process5.34E-05
13GO:0000023: maltose metabolic process5.34E-05
14GO:0005980: glycogen catabolic process5.34E-05
15GO:0030198: extracellular matrix organization5.34E-05
16GO:0009773: photosynthetic electron transport in photosystem I5.99E-05
17GO:0009629: response to gravity1.30E-04
18GO:0019388: galactose catabolic process1.30E-04
19GO:0007154: cell communication1.30E-04
20GO:0090342: regulation of cell aging1.30E-04
21GO:0042325: regulation of phosphorylation1.30E-04
22GO:0016042: lipid catabolic process1.70E-04
23GO:0019419: sulfate reduction2.22E-04
24GO:0010731: protein glutathionylation3.25E-04
25GO:0009590: detection of gravity3.25E-04
26GO:0043572: plastid fission3.25E-04
27GO:0010601: positive regulation of auxin biosynthetic process3.25E-04
28GO:0006508: proteolysis3.97E-04
29GO:0022622: root system development4.35E-04
30GO:0009607: response to biotic stimulus5.28E-04
31GO:0010236: plastoquinone biosynthetic process5.52E-04
32GO:0009658: chloroplast organization6.43E-04
33GO:0010304: PSII associated light-harvesting complex II catabolic process6.76E-04
34GO:0000470: maturation of LSU-rRNA6.76E-04
35GO:0000741: karyogamy6.76E-04
36GO:0042372: phylloquinone biosynthetic process8.05E-04
37GO:0010310: regulation of hydrogen peroxide metabolic process8.05E-04
38GO:0010098: suspensor development9.40E-04
39GO:0032880: regulation of protein localization9.40E-04
40GO:0009772: photosynthetic electron transport in photosystem II9.40E-04
41GO:0009231: riboflavin biosynthetic process1.08E-03
42GO:0048564: photosystem I assembly1.08E-03
43GO:0005978: glycogen biosynthetic process1.08E-03
44GO:0032544: plastid translation1.23E-03
45GO:0046916: cellular transition metal ion homeostasis1.38E-03
46GO:0010205: photoinhibition1.54E-03
47GO:0009638: phototropism1.54E-03
48GO:0000103: sulfate assimilation1.71E-03
49GO:0010629: negative regulation of gene expression1.71E-03
50GO:0048229: gametophyte development1.88E-03
51GO:0006820: anion transport2.06E-03
52GO:0005983: starch catabolic process2.06E-03
53GO:0010628: positive regulation of gene expression2.25E-03
54GO:0006006: glucose metabolic process2.25E-03
55GO:0010075: regulation of meristem growth2.25E-03
56GO:2000012: regulation of auxin polar transport2.25E-03
57GO:0010102: lateral root morphogenesis2.25E-03
58GO:0009266: response to temperature stimulus2.43E-03
59GO:0009934: regulation of meristem structural organization2.43E-03
60GO:0010020: chloroplast fission2.43E-03
61GO:0005975: carbohydrate metabolic process2.45E-03
62GO:0019344: cysteine biosynthetic process3.03E-03
63GO:0061077: chaperone-mediated protein folding3.46E-03
64GO:0006730: one-carbon metabolic process3.68E-03
65GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.90E-03
66GO:0008284: positive regulation of cell proliferation4.36E-03
67GO:0080022: primary root development4.60E-03
68GO:0048653: anther development4.60E-03
69GO:0009958: positive gravitropism4.84E-03
70GO:0010197: polar nucleus fusion4.84E-03
71GO:0019252: starch biosynthetic process5.34E-03
72GO:0009556: microsporogenesis5.34E-03
73GO:1901657: glycosyl compound metabolic process6.12E-03
74GO:0030163: protein catabolic process6.12E-03
75GO:0009828: plant-type cell wall loosening6.39E-03
76GO:0009817: defense response to fungus, incompatible interaction8.68E-03
77GO:0006629: lipid metabolic process9.31E-03
78GO:0048527: lateral root development9.61E-03
79GO:0030001: metal ion transport1.12E-02
80GO:0006855: drug transmembrane transport1.37E-02
81GO:0009664: plant-type cell wall organization1.44E-02
82GO:0009735: response to cytokinin1.51E-02
83GO:0009585: red, far-red light phototransduction1.51E-02
84GO:0009553: embryo sac development1.90E-02
85GO:0009624: response to nematode1.94E-02
86GO:0009742: brassinosteroid mediated signaling pathway2.02E-02
87GO:0009790: embryo development2.55E-02
88GO:0009451: RNA modification2.91E-02
89GO:0030154: cell differentiation3.65E-02
90GO:0009826: unidimensional cell growth3.81E-02
91GO:0048366: leaf development4.39E-02
92GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.67E-02
RankGO TermAdjusted P value
1GO:0005201: extracellular matrix structural constituent0.00E+00
2GO:0005363: maltose transmembrane transporter activity0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0004645: phosphorylase activity5.34E-05
5GO:0008184: glycogen phosphorylase activity5.34E-05
6GO:0009973: adenylyl-sulfate reductase activity1.30E-04
7GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.30E-04
8GO:0004614: phosphoglucomutase activity1.30E-04
9GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.30E-04
10GO:0003919: FMN adenylyltransferase activity1.30E-04
11GO:0004176: ATP-dependent peptidase activity1.67E-04
12GO:0045174: glutathione dehydrogenase (ascorbate) activity2.22E-04
13GO:0043023: ribosomal large subunit binding3.25E-04
14GO:0004659: prenyltransferase activity4.35E-04
15GO:0008237: metallopeptidase activity4.47E-04
16GO:0004629: phospholipase C activity6.76E-04
17GO:0004222: metalloendopeptidase activity7.10E-04
18GO:0004435: phosphatidylinositol phospholipase C activity8.05E-04
19GO:0046914: transition metal ion binding1.23E-03
20GO:0016298: lipase activity1.42E-03
21GO:0047372: acylglycerol lipase activity1.88E-03
22GO:0004089: carbonate dehydratase activity2.25E-03
23GO:0019888: protein phosphatase regulator activity2.25E-03
24GO:0008083: growth factor activity2.43E-03
25GO:0004252: serine-type endopeptidase activity2.67E-03
26GO:0005528: FK506 binding3.03E-03
27GO:0033612: receptor serine/threonine kinase binding3.46E-03
28GO:0003727: single-stranded RNA binding4.13E-03
29GO:0005199: structural constituent of cell wall4.84E-03
30GO:0016788: hydrolase activity, acting on ester bonds5.19E-03
31GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.12E-03
32GO:0052689: carboxylic ester hydrolase activity6.97E-03
33GO:0102483: scopolin beta-glucosidase activity8.09E-03
34GO:0008236: serine-type peptidase activity8.38E-03
35GO:0015238: drug transmembrane transporter activity8.99E-03
36GO:0008422: beta-glucosidase activity1.09E-02
37GO:0004364: glutathione transferase activity1.19E-02
38GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.37E-02
39GO:0016887: ATPase activity1.45E-02
40GO:0008234: cysteine-type peptidase activity1.63E-02
41GO:0019843: rRNA binding2.28E-02
42GO:0030170: pyridoxal phosphate binding2.46E-02
43GO:0015297: antiporter activity2.77E-02
44GO:0003824: catalytic activity3.68E-02
45GO:0000287: magnesium ion binding3.86E-02
46GO:0008233: peptidase activity4.50E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast6.77E-10
2GO:0009570: chloroplast stroma2.28E-07
3GO:0009941: chloroplast envelope3.82E-05
4GO:0009579: thylakoid5.94E-04
5GO:0009840: chloroplastic endopeptidase Clp complex8.05E-04
6GO:0009535: chloroplast thylakoid membrane9.92E-04
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.38E-03
8GO:0000159: protein phosphatase type 2A complex1.88E-03
9GO:0009706: chloroplast inner membrane1.93E-03
10GO:0009543: chloroplast thylakoid lumen2.41E-03
11GO:0009532: plastid stroma3.46E-03
12GO:0009534: chloroplast thylakoid3.53E-03
13GO:0010319: stromule6.66E-03
14GO:0009536: plastid8.81E-03
15GO:0031977: thylakoid lumen1.16E-02
16GO:0005615: extracellular space3.11E-02
17GO:0046658: anchored component of plasma membrane3.50E-02
18GO:0016020: membrane4.22E-02
19GO:0031969: chloroplast membrane4.56E-02
20GO:0022625: cytosolic large ribosomal subunit4.73E-02
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Gene type



Gene DE type