co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045730: respiratory burst	0.00E+00
2	GO:0035264: multicellular organism growth	0.00E+00
3	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
4	GO:0010200: response to chitin	1.05E-09
5	GO:0006468: protein phosphorylation	1.42E-06
6	GO:0009611: response to wounding	1.16E-05
7	GO:0045088: regulation of innate immune response	3.05E-05
8	GO:0009697: salicylic acid biosynthetic process	4.91E-05
9	GO:0042742: defense response to bacterium	1.04E-04
10	GO:0006952: defense response	1.07E-04
11	GO:0006979: response to oxidative stress	1.07E-04
12	GO:0046470: phosphatidylcholine metabolic process	1.33E-04
13	GO:0006643: membrane lipid metabolic process	2.04E-04
14	GO:0007229: integrin-mediated signaling pathway	2.04E-04
15	GO:0080157: regulation of plant-type cell wall organization or biogenesis	2.04E-04
16	GO:0050691: regulation of defense response to virus by host	2.04E-04
17	GO:0015784: GDP-mannose transport	2.04E-04
18	GO:0051938: L-glutamate import	2.04E-04
19	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.04E-04
20	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.04E-04
21	GO:0009737: response to abscisic acid	2.19E-04
22	GO:0090333: regulation of stomatal closure	2.57E-04
23	GO:0043091: L-arginine import	4.57E-04
24	GO:0010507: negative regulation of autophagy	4.57E-04
25	GO:0015802: basic amino acid transport	4.57E-04
26	GO:0070588: calcium ion transmembrane transport	6.82E-04
27	GO:1900140: regulation of seedling development	7.44E-04
28	GO:0015783: GDP-fucose transport	7.44E-04
29	GO:0009695: jasmonic acid biosynthetic process	9.21E-04
30	GO:0002679: respiratory burst involved in defense response	1.06E-03
31	GO:0033014: tetrapyrrole biosynthetic process	1.06E-03
32	GO:0010306: rhamnogalacturonan II biosynthetic process	1.06E-03
33	GO:0046836: glycolipid transport	1.06E-03
34	GO:0048194: Golgi vesicle budding	1.06E-03
35	GO:0072334: UDP-galactose transmembrane transport	1.06E-03
36	GO:0031348: negative regulation of defense response	1.10E-03
37	GO:0009809: lignin biosynthetic process	1.17E-03
38	GO:0006486: protein glycosylation	1.17E-03
39	GO:0010508: positive regulation of autophagy	1.41E-03
40	GO:0010107: potassium ion import	1.41E-03
41	GO:0060548: negative regulation of cell death	1.41E-03
42	GO:0046345: abscisic acid catabolic process	1.41E-03
43	GO:0010483: pollen tube reception	1.41E-03
44	GO:0010118: stomatal movement	1.51E-03
45	GO:0009620: response to fungus	1.62E-03
46	GO:0009738: abscisic acid-activated signaling pathway	1.68E-03
47	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.77E-03
48	GO:0010117: photoprotection	1.80E-03
49	GO:0010225: response to UV-C	1.80E-03
50	GO:0032957: inositol trisphosphate metabolic process	1.80E-03
51	GO:0006828: manganese ion transport	2.21E-03
52	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.21E-03
53	GO:0046855: inositol phosphate dephosphorylation	2.21E-03
54	GO:1900425: negative regulation of defense response to bacterium	2.21E-03
55	GO:0010405: arabinogalactan protein metabolic process	2.21E-03
56	GO:0015691: cadmium ion transport	2.21E-03
57	GO:0042372: phylloquinone biosynthetic process	2.66E-03
58	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.66E-03
59	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.13E-03
60	GO:0010044: response to aluminum ion	3.13E-03
61	GO:0010161: red light signaling pathway	3.13E-03
62	GO:0098869: cellular oxidant detoxification	3.13E-03
63	GO:1900056: negative regulation of leaf senescence	3.13E-03
64	GO:0030091: protein repair	3.63E-03
65	GO:0010150: leaf senescence	3.65E-03
66	GO:0009808: lignin metabolic process	4.15E-03
67	GO:0010099: regulation of photomorphogenesis	4.15E-03
68	GO:0006470: protein dephosphorylation	4.32E-03
69	GO:0051865: protein autoubiquitination	4.70E-03
70	GO:0006783: heme biosynthetic process	4.70E-03
71	GO:0009051: pentose-phosphate shunt, oxidative branch	4.70E-03
72	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.27E-03
73	GO:0007064: mitotic sister chromatid cohesion	5.86E-03
74	GO:0009414: response to water deprivation	5.88E-03
75	GO:0046856: phosphatidylinositol dephosphorylation	6.48E-03
76	GO:0006816: calcium ion transport	6.48E-03
77	GO:0009698: phenylpropanoid metabolic process	6.48E-03
78	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.12E-03
79	GO:0008361: regulation of cell size	7.12E-03
80	GO:0012501: programmed cell death	7.12E-03
81	GO:0006006: glucose metabolic process	7.78E-03
82	GO:0055046: microgametogenesis	7.78E-03
83	GO:0035556: intracellular signal transduction	7.89E-03
84	GO:0002237: response to molecule of bacterial origin	8.47E-03
85	GO:0007034: vacuolar transport	8.47E-03
86	GO:0010540: basipetal auxin transport	8.47E-03
87	GO:0046777: protein autophosphorylation	9.10E-03
88	GO:0090351: seedling development	9.17E-03
89	GO:0009969: xyloglucan biosynthetic process	9.17E-03
90	GO:0009409: response to cold	1.04E-02
91	GO:0045892: negative regulation of transcription, DNA-templated	1.07E-02
92	GO:0003333: amino acid transmembrane transport	1.22E-02
93	GO:0048511: rhythmic process	1.22E-02
94	GO:0009742: brassinosteroid mediated signaling pathway	1.25E-02
95	GO:0032259: methylation	1.30E-02
96	GO:0009751: response to salicylic acid	1.35E-02
97	GO:0009625: response to insect	1.38E-02
98	GO:0050832: defense response to fungus	1.44E-02
99	GO:0019722: calcium-mediated signaling	1.47E-02
100	GO:0010584: pollen exine formation	1.47E-02
101	GO:0042147: retrograde transport, endosome to Golgi	1.55E-02
102	GO:0009845: seed germination	1.60E-02
103	GO:0042391: regulation of membrane potential	1.64E-02
104	GO:0042631: cellular response to water deprivation	1.64E-02
105	GO:0010197: polar nucleus fusion	1.73E-02
106	GO:0009646: response to absence of light	1.82E-02
107	GO:0008654: phospholipid biosynthetic process	1.92E-02
108	GO:0002229: defense response to oomycetes	2.01E-02
109	GO:0000302: response to reactive oxygen species	2.01E-02
110	GO:0006891: intra-Golgi vesicle-mediated transport	2.01E-02
111	GO:0016032: viral process	2.11E-02
112	GO:0009630: gravitropism	2.11E-02
113	GO:0007165: signal transduction	2.17E-02
114	GO:0009617: response to bacterium	2.44E-02
115	GO:0010468: regulation of gene expression	2.44E-02
116	GO:0009911: positive regulation of flower development	2.61E-02
117	GO:0001666: response to hypoxia	2.61E-02
118	GO:0009816: defense response to bacterium, incompatible interaction	2.72E-02
119	GO:0009627: systemic acquired resistance	2.83E-02
120	GO:0015995: chlorophyll biosynthetic process	2.94E-02
121	GO:0048573: photoperiodism, flowering	2.94E-02
122	GO:0008219: cell death	3.16E-02
123	GO:0010311: lateral root formation	3.27E-02
124	GO:0009832: plant-type cell wall biogenesis	3.27E-02
125	GO:0006970: response to osmotic stress	3.41E-02
126	GO:0009631: cold acclimation	3.50E-02
127	GO:0048527: lateral root development	3.50E-02
128	GO:0010119: regulation of stomatal movement	3.50E-02
129	GO:0045087: innate immune response	3.74E-02
130	GO:0034599: cellular response to oxidative stress	3.86E-02
131	GO:0030001: metal ion transport	4.10E-02
132	GO:0042542: response to hydrogen peroxide	4.35E-02
133	GO:0009744: response to sucrose	4.47E-02
134	GO:0008643: carbohydrate transport	4.73E-02
135	GO:0009644: response to high light intensity	4.73E-02
136	GO:0009651: response to salt stress	4.77E-02
137	GO:0006855: drug transmembrane transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005458: GDP-mannose transmembrane transporter activity	0.00E+00
2	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
3	GO:0004168: dolichol kinase activity	0.00E+00
4	GO:0016301: kinase activity	8.80E-06
5	GO:0005524: ATP binding	1.49E-05
6	GO:0004674: protein serine/threonine kinase activity	1.53E-05
7	GO:0004012: phospholipid-translocating ATPase activity	1.00E-04
8	GO:0004325: ferrochelatase activity	2.04E-04
9	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	2.04E-04
10	GO:0008909: isochorismate synthase activity	2.04E-04
11	GO:0031127: alpha-(1,2)-fucosyltransferase activity	2.04E-04
12	GO:0015085: calcium ion transmembrane transporter activity	2.04E-04
13	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.11E-04
14	GO:0004630: phospholipase D activity	2.11E-04
15	GO:0008171: O-methyltransferase activity	3.60E-04
16	GO:0005509: calcium ion binding	3.84E-04
17	GO:0001671: ATPase activator activity	4.57E-04
18	GO:0022821: potassium ion antiporter activity	4.57E-04
19	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.42E-04
20	GO:0005388: calcium-transporting ATPase activity	5.42E-04
21	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	7.44E-04
22	GO:0042409: caffeoyl-CoA O-methyltransferase activity	7.44E-04
23	GO:0046423: allene-oxide cyclase activity	7.44E-04
24	GO:0016595: glutamate binding	7.44E-04
25	GO:0005457: GDP-fucose transmembrane transporter activity	7.44E-04
26	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.06E-03
27	GO:0015181: arginine transmembrane transporter activity	1.06E-03
28	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	1.06E-03
29	GO:0015189: L-lysine transmembrane transporter activity	1.06E-03
30	GO:0017089: glycolipid transporter activity	1.06E-03
31	GO:0043531: ADP binding	1.39E-03
32	GO:0042277: peptide binding	1.41E-03
33	GO:0015368: calcium:cation antiporter activity	1.41E-03
34	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.41E-03
35	GO:0051861: glycolipid binding	1.41E-03
36	GO:0015369: calcium:proton antiporter activity	1.41E-03
37	GO:0005313: L-glutamate transmembrane transporter activity	1.41E-03
38	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.80E-03
39	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.80E-03
40	GO:0010294: abscisic acid glucosyltransferase activity	1.80E-03
41	GO:0005459: UDP-galactose transmembrane transporter activity	1.80E-03
42	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.21E-03
43	GO:0035252: UDP-xylosyltransferase activity	2.21E-03
44	GO:0004605: phosphatidate cytidylyltransferase activity	2.21E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.21E-03
46	GO:0019900: kinase binding	2.66E-03
47	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.66E-03
48	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.66E-03
49	GO:0004143: diacylglycerol kinase activity	3.13E-03
50	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.13E-03
51	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.13E-03
52	GO:0052747: sinapyl alcohol dehydrogenase activity	3.63E-03
53	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.63E-03
54	GO:0005516: calmodulin binding	3.65E-03
55	GO:0004672: protein kinase activity	3.66E-03
56	GO:0003951: NAD+ kinase activity	4.15E-03
57	GO:0008417: fucosyltransferase activity	4.70E-03
58	GO:0016207: 4-coumarate-CoA ligase activity	4.70E-03
59	GO:0015174: basic amino acid transmembrane transporter activity	5.27E-03
60	GO:0004713: protein tyrosine kinase activity	5.86E-03
61	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.12E-03
62	GO:0008378: galactosyltransferase activity	7.12E-03
63	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	7.12E-03
64	GO:0015095: magnesium ion transmembrane transporter activity	7.78E-03
65	GO:0004190: aspartic-type endopeptidase activity	9.17E-03
66	GO:0030552: cAMP binding	9.17E-03
67	GO:0030553: cGMP binding	9.17E-03
68	GO:0004842: ubiquitin-protein transferase activity	1.08E-02
69	GO:0005216: ion channel activity	1.14E-02
70	GO:0030246: carbohydrate binding	1.14E-02
71	GO:0051087: chaperone binding	1.14E-02
72	GO:0043424: protein histidine kinase binding	1.14E-02
73	GO:0004722: protein serine/threonine phosphatase activity	1.18E-02
74	GO:0004707: MAP kinase activity	1.22E-02
75	GO:0033612: receptor serine/threonine kinase binding	1.22E-02
76	GO:0005249: voltage-gated potassium channel activity	1.64E-02
77	GO:0030551: cyclic nucleotide binding	1.64E-02
78	GO:0010181: FMN binding	1.82E-02
79	GO:0019901: protein kinase binding	1.92E-02
80	GO:0004197: cysteine-type endopeptidase activity	2.11E-02
81	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.83E-02
82	GO:0004806: triglyceride lipase activity	2.94E-02
83	GO:0004721: phosphoprotein phosphatase activity	2.94E-02
84	GO:0004683: calmodulin-dependent protein kinase activity	2.94E-02
85	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.05E-02
86	GO:0000287: magnesium ion binding	3.11E-02
87	GO:0015238: drug transmembrane transporter activity	3.27E-02
88	GO:0004222: metalloendopeptidase activity	3.38E-02
89	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.50E-02
90	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.86E-02
91	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.98E-02
92	GO:0050661: NADP binding	4.10E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.99E-08
2	GO:0030176: integral component of endoplasmic reticulum membrane	6.82E-04
3	GO:0016021: integral component of membrane	1.24E-03
4	GO:0030173: integral component of Golgi membrane	2.66E-03
5	GO:0031012: extracellular matrix	7.78E-03
6	GO:0005769: early endosome	9.90E-03
7	GO:0005887: integral component of plasma membrane	2.02E-02
8	GO:0009705: plant-type vacuole membrane	2.05E-02
9	GO:0032580: Golgi cisterna membrane	2.30E-02
10	GO:0009536: plastid	2.84E-02
11	GO:0000151: ubiquitin ligase complex	3.16E-02
12	GO:0000139: Golgi membrane	3.28E-02
13	GO:0000786: nucleosome	3.62E-02
14	GO:0031969: chloroplast membrane	3.92E-02
15	GO:0090406: pollen tube	4.47E-02
16	GO:0005794: Golgi apparatus	4.84E-02