GO Enrichment Analysis of Co-expressed Genes with
AT4G29850
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000117: negative regulation of cysteine-type endopeptidase activity | 0.00E+00 |
| 2 | GO:0042964: thioredoxin reduction | 8.25E-05 |
| 3 | GO:0046939: nucleotide phosphorylation | 1.97E-04 |
| 4 | GO:0010372: positive regulation of gibberellin biosynthetic process | 1.97E-04 |
| 5 | GO:0090630: activation of GTPase activity | 3.29E-04 |
| 6 | GO:0006517: protein deglycosylation | 3.29E-04 |
| 7 | GO:0001927: exocyst assembly | 3.29E-04 |
| 8 | GO:0055074: calcium ion homeostasis | 3.29E-04 |
| 9 | GO:0046686: response to cadmium ion | 3.31E-04 |
| 10 | GO:0051601: exocyst localization | 4.75E-04 |
| 11 | GO:0010222: stem vascular tissue pattern formation | 6.32E-04 |
| 12 | GO:0006536: glutamate metabolic process | 6.32E-04 |
| 13 | GO:0046283: anthocyanin-containing compound metabolic process | 8.00E-04 |
| 14 | GO:0006465: signal peptide processing | 8.00E-04 |
| 15 | GO:0009823: cytokinin catabolic process | 8.00E-04 |
| 16 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 9.77E-04 |
| 17 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.01E-03 |
| 18 | GO:0009554: megasporogenesis | 1.16E-03 |
| 19 | GO:0006099: tricarboxylic acid cycle | 1.46E-03 |
| 20 | GO:0006402: mRNA catabolic process | 1.57E-03 |
| 21 | GO:0006102: isocitrate metabolic process | 1.57E-03 |
| 22 | GO:0006491: N-glycan processing | 1.57E-03 |
| 23 | GO:0006887: exocytosis | 1.66E-03 |
| 24 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.72E-03 |
| 25 | GO:0019430: removal of superoxide radicals | 1.79E-03 |
| 26 | GO:0010204: defense response signaling pathway, resistance gene-independent | 1.79E-03 |
| 27 | GO:0060321: acceptance of pollen | 1.79E-03 |
| 28 | GO:0007186: G-protein coupled receptor signaling pathway | 1.79E-03 |
| 29 | GO:0009821: alkaloid biosynthetic process | 2.02E-03 |
| 30 | GO:0046685: response to arsenic-containing substance | 2.02E-03 |
| 31 | GO:0009688: abscisic acid biosynthetic process | 2.51E-03 |
| 32 | GO:0043069: negative regulation of programmed cell death | 2.51E-03 |
| 33 | GO:0006096: glycolytic process | 2.83E-03 |
| 34 | GO:0009626: plant-type hypersensitive response | 3.02E-03 |
| 35 | GO:0016925: protein sumoylation | 3.03E-03 |
| 36 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 3.03E-03 |
| 37 | GO:0006790: sulfur compound metabolic process | 3.03E-03 |
| 38 | GO:0006807: nitrogen compound metabolic process | 3.31E-03 |
| 39 | GO:0034605: cellular response to heat | 3.59E-03 |
| 40 | GO:0046854: phosphatidylinositol phosphorylation | 3.88E-03 |
| 41 | GO:0009058: biosynthetic process | 4.48E-03 |
| 42 | GO:0015031: protein transport | 4.54E-03 |
| 43 | GO:0006874: cellular calcium ion homeostasis | 4.80E-03 |
| 44 | GO:0015992: proton transport | 5.12E-03 |
| 45 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.45E-03 |
| 46 | GO:0010227: floral organ abscission | 5.78E-03 |
| 47 | GO:0009306: protein secretion | 6.13E-03 |
| 48 | GO:0051028: mRNA transport | 6.48E-03 |
| 49 | GO:0009851: auxin biosynthetic process | 7.95E-03 |
| 50 | GO:0031047: gene silencing by RNA | 8.73E-03 |
| 51 | GO:1901657: glycosyl compound metabolic process | 9.12E-03 |
| 52 | GO:0030163: protein catabolic process | 9.12E-03 |
| 53 | GO:0010252: auxin homeostasis | 9.53E-03 |
| 54 | GO:0016579: protein deubiquitination | 1.04E-02 |
| 55 | GO:0009615: response to virus | 1.08E-02 |
| 56 | GO:0006906: vesicle fusion | 1.17E-02 |
| 57 | GO:0016049: cell growth | 1.26E-02 |
| 58 | GO:0006499: N-terminal protein myristoylation | 1.39E-02 |
| 59 | GO:0009407: toxin catabolic process | 1.39E-02 |
| 60 | GO:0042742: defense response to bacterium | 1.42E-02 |
| 61 | GO:0006629: lipid metabolic process | 1.66E-02 |
| 62 | GO:0009926: auxin polar transport | 1.84E-02 |
| 63 | GO:0051707: response to other organism | 1.84E-02 |
| 64 | GO:0009636: response to toxic substance | 2.00E-02 |
| 65 | GO:0031347: regulation of defense response | 2.11E-02 |
| 66 | GO:0009664: plant-type cell wall organization | 2.16E-02 |
| 67 | GO:0009846: pollen germination | 2.16E-02 |
| 68 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.33E-02 |
| 69 | GO:0048316: seed development | 2.62E-02 |
| 70 | GO:0009620: response to fungus | 2.74E-02 |
| 71 | GO:0009739: response to gibberellin | 4.67E-02 |
| 72 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.67E-02 |
| 73 | GO:0007166: cell surface receptor signaling pathway | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030955: potassium ion binding | 8.11E-05 |
| 2 | GO:0004743: pyruvate kinase activity | 8.11E-05 |
| 3 | GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity | 8.25E-05 |
| 4 | GO:0048037: cofactor binding | 8.25E-05 |
| 5 | GO:0010013: N-1-naphthylphthalamic acid binding | 8.25E-05 |
| 6 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.97E-04 |
| 7 | GO:0004566: beta-glucuronidase activity | 1.97E-04 |
| 8 | GO:0052739: phosphatidylserine 1-acylhydrolase activity | 1.97E-04 |
| 9 | GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity | 1.97E-04 |
| 10 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.97E-04 |
| 11 | GO:0004298: threonine-type endopeptidase activity | 3.03E-04 |
| 12 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 3.29E-04 |
| 13 | GO:0004351: glutamate decarboxylase activity | 4.75E-04 |
| 14 | GO:0019201: nucleotide kinase activity | 4.75E-04 |
| 15 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 4.75E-04 |
| 16 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 6.32E-04 |
| 17 | GO:0004031: aldehyde oxidase activity | 6.32E-04 |
| 18 | GO:0050302: indole-3-acetaldehyde oxidase activity | 6.32E-04 |
| 19 | GO:0010279: indole-3-acetic acid amido synthetase activity | 6.32E-04 |
| 20 | GO:0004930: G-protein coupled receptor activity | 6.32E-04 |
| 21 | GO:0004518: nuclease activity | 6.48E-04 |
| 22 | GO:0031386: protein tag | 8.00E-04 |
| 23 | GO:0008374: O-acyltransferase activity | 8.00E-04 |
| 24 | GO:0019139: cytokinin dehydrogenase activity | 8.00E-04 |
| 25 | GO:0031593: polyubiquitin binding | 9.77E-04 |
| 26 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 9.77E-04 |
| 27 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 9.77E-04 |
| 28 | GO:0036402: proteasome-activating ATPase activity | 9.77E-04 |
| 29 | GO:0004017: adenylate kinase activity | 1.16E-03 |
| 30 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.16E-03 |
| 31 | GO:0000287: magnesium ion binding | 1.28E-03 |
| 32 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.28E-03 |
| 33 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 1.79E-03 |
| 34 | GO:0016844: strictosidine synthase activity | 2.26E-03 |
| 35 | GO:0004177: aminopeptidase activity | 2.77E-03 |
| 36 | GO:0008559: xenobiotic-transporting ATPase activity | 2.77E-03 |
| 37 | GO:0008131: primary amine oxidase activity | 3.59E-03 |
| 38 | GO:0017025: TBP-class protein binding | 3.88E-03 |
| 39 | GO:0004970: ionotropic glutamate receptor activity | 3.88E-03 |
| 40 | GO:0005217: intracellular ligand-gated ion channel activity | 3.88E-03 |
| 41 | GO:0030170: pyridoxal phosphate binding | 4.71E-03 |
| 42 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 5.12E-03 |
| 43 | GO:0005199: structural constituent of cell wall | 7.20E-03 |
| 44 | GO:0004791: thioredoxin-disulfide reductase activity | 7.57E-03 |
| 45 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 8.33E-03 |
| 46 | GO:0043531: ADP binding | 9.93E-03 |
| 47 | GO:0050660: flavin adenine dinucleotide binding | 1.05E-02 |
| 48 | GO:0008233: peptidase activity | 1.10E-02 |
| 49 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.21E-02 |
| 50 | GO:0102483: scopolin beta-glucosidase activity | 1.21E-02 |
| 51 | GO:0005096: GTPase activator activity | 1.35E-02 |
| 52 | GO:0004722: protein serine/threonine phosphatase activity | 1.48E-02 |
| 53 | GO:0003746: translation elongation factor activity | 1.54E-02 |
| 54 | GO:0003993: acid phosphatase activity | 1.59E-02 |
| 55 | GO:0008422: beta-glucosidase activity | 1.64E-02 |
| 56 | GO:0000149: SNARE binding | 1.64E-02 |
| 57 | GO:0004364: glutathione transferase activity | 1.79E-02 |
| 58 | GO:0005484: SNAP receptor activity | 1.84E-02 |
| 59 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.95E-02 |
| 60 | GO:0005198: structural molecule activity | 2.00E-02 |
| 61 | GO:0051287: NAD binding | 2.11E-02 |
| 62 | GO:0016298: lipase activity | 2.33E-02 |
| 63 | GO:0051082: unfolded protein binding | 2.93E-02 |
| 64 | GO:0000166: nucleotide binding | 2.95E-02 |
| 65 | GO:0008565: protein transporter activity | 3.90E-02 |
| 66 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.11E-02 |
| 67 | GO:0005507: copper ion binding | 4.19E-02 |
| 68 | GO:0005516: calmodulin binding | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005829: cytosol | 4.94E-06 |
| 2 | GO:0000502: proteasome complex | 1.36E-05 |
| 3 | GO:0031090: organelle membrane | 6.66E-05 |
| 4 | GO:0016442: RISC complex | 8.25E-05 |
| 5 | GO:0048471: perinuclear region of cytoplasm | 1.14E-04 |
| 6 | GO:0005839: proteasome core complex | 3.03E-04 |
| 7 | GO:0009530: primary cell wall | 3.29E-04 |
| 8 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 3.29E-04 |
| 9 | GO:0030132: clathrin coat of coated pit | 3.29E-04 |
| 10 | GO:0031597: cytosolic proteasome complex | 1.16E-03 |
| 11 | GO:0031595: nuclear proteasome complex | 1.36E-03 |
| 12 | GO:0019773: proteasome core complex, alpha-subunit complex | 1.79E-03 |
| 13 | GO:0005783: endoplasmic reticulum | 2.02E-03 |
| 14 | GO:0010494: cytoplasmic stress granule | 2.02E-03 |
| 15 | GO:0005886: plasma membrane | 2.12E-03 |
| 16 | GO:0005802: trans-Golgi network | 2.21E-03 |
| 17 | GO:0008540: proteasome regulatory particle, base subcomplex | 2.26E-03 |
| 18 | GO:0005635: nuclear envelope | 2.57E-03 |
| 19 | GO:0005768: endosome | 2.69E-03 |
| 20 | GO:0005765: lysosomal membrane | 2.77E-03 |
| 21 | GO:0005794: Golgi apparatus | 5.76E-03 |
| 22 | GO:0005618: cell wall | 7.50E-03 |
| 23 | GO:0000145: exocyst | 8.73E-03 |
| 24 | GO:0000932: P-body | 1.08E-02 |
| 25 | GO:0005788: endoplasmic reticulum lumen | 1.12E-02 |
| 26 | GO:0005773: vacuole | 1.24E-02 |
| 27 | GO:0005643: nuclear pore | 1.30E-02 |
| 28 | GO:0000325: plant-type vacuole | 1.44E-02 |
| 29 | GO:0031201: SNARE complex | 1.74E-02 |
| 30 | GO:0005856: cytoskeleton | 2.00E-02 |
| 31 | GO:0005774: vacuolar membrane | 2.06E-02 |
| 32 | GO:0005789: endoplasmic reticulum membrane | 2.42E-02 |
| 33 | GO:0005834: heterotrimeric G-protein complex | 2.68E-02 |
| 34 | GO:0009524: phragmoplast | 3.56E-02 |
| 35 | GO:0005759: mitochondrial matrix | 4.04E-02 |