co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006216: cytidine catabolic process	0.00E+00
2	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
3	GO:0010398: xylogalacturonan metabolic process	0.00E+00
4	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
5	GO:0072722: response to amitrole	0.00E+00
6	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
7	GO:0006102: isocitrate metabolic process	4.50E-05
8	GO:0006099: tricarboxylic acid cycle	1.28E-04
9	GO:0060151: peroxisome localization	2.04E-04
10	GO:0051645: Golgi localization	2.04E-04
11	GO:0051252: regulation of RNA metabolic process	2.04E-04
12	GO:0031204: posttranslational protein targeting to membrane, translocation	2.04E-04
13	GO:0046939: nucleotide phosphorylation	2.04E-04
14	GO:0080026: response to indolebutyric acid	2.04E-04
15	GO:0016192: vesicle-mediated transport	2.93E-04
16	GO:0010272: response to silver ion	3.42E-04
17	GO:0009062: fatty acid catabolic process	3.42E-04
18	GO:0090436: leaf pavement cell development	3.42E-04
19	GO:0051646: mitochondrion localization	3.42E-04
20	GO:0080024: indolebutyric acid metabolic process	4.92E-04
21	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	6.55E-04
22	GO:0098719: sodium ion import across plasma membrane	8.29E-04
23	GO:0006564: L-serine biosynthetic process	8.29E-04
24	GO:0009627: systemic acquired resistance	1.01E-03
25	GO:0045040: protein import into mitochondrial outer membrane	1.01E-03
26	GO:0006555: methionine metabolic process	1.01E-03
27	GO:0009972: cytidine deamination	1.01E-03
28	GO:0009082: branched-chain amino acid biosynthetic process	1.20E-03
29	GO:0019509: L-methionine salvage from methylthioadenosine	1.20E-03
30	GO:0009099: valine biosynthetic process	1.20E-03
31	GO:0048767: root hair elongation	1.23E-03
32	GO:0071669: plant-type cell wall organization or biogenesis	1.41E-03
33	GO:0006367: transcription initiation from RNA polymerase II promoter	1.86E-03
34	GO:0022900: electron transport chain	1.86E-03
35	GO:0009097: isoleucine biosynthetic process	1.86E-03
36	GO:0009657: plastid organization	1.86E-03
37	GO:0000209: protein polyubiquitination	1.97E-03
38	GO:0031347: regulation of defense response	2.28E-03
39	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.28E-03
40	GO:0009098: leucine biosynthetic process	2.35E-03
41	GO:0051453: regulation of intracellular pH	2.35E-03
42	GO:0006032: chitin catabolic process	2.61E-03
43	GO:0043069: negative regulation of programmed cell death	2.61E-03
44	GO:0000272: polysaccharide catabolic process	2.87E-03
45	GO:0071365: cellular response to auxin stimulus	3.15E-03
46	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	3.43E-03
47	GO:0030048: actin filament-based movement	3.43E-03
48	GO:0006626: protein targeting to mitochondrion	3.43E-03
49	GO:0010102: lateral root morphogenesis	3.43E-03
50	GO:0055046: microgametogenesis	3.43E-03
51	GO:0048467: gynoecium development	3.73E-03
52	GO:0009266: response to temperature stimulus	3.73E-03
53	GO:0007030: Golgi organization	4.03E-03
54	GO:0000162: tryptophan biosynthetic process	4.34E-03
55	GO:0034976: response to endoplasmic reticulum stress	4.34E-03
56	GO:0006338: chromatin remodeling	4.65E-03
57	GO:0010073: meristem maintenance	4.98E-03
58	GO:0016998: cell wall macromolecule catabolic process	5.32E-03
59	GO:0010227: floral organ abscission	6.01E-03
60	GO:0009306: protein secretion	6.36E-03
61	GO:0009561: megagametogenesis	6.36E-03
62	GO:0016117: carotenoid biosynthetic process	6.73E-03
63	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.91E-03
64	GO:0045489: pectin biosynthetic process	7.48E-03
65	GO:0006814: sodium ion transport	7.87E-03
66	GO:0006635: fatty acid beta-oxidation	8.66E-03
67	GO:0055114: oxidation-reduction process	9.36E-03
68	GO:0030163: protein catabolic process	9.48E-03
69	GO:0010090: trichome morphogenesis	9.48E-03
70	GO:0006464: cellular protein modification process	9.91E-03
71	GO:0071805: potassium ion transmembrane transport	1.03E-02
72	GO:0009615: response to virus	1.12E-02
73	GO:0009407: toxin catabolic process	1.45E-02
74	GO:0006886: intracellular protein transport	1.47E-02
75	GO:0042742: defense response to bacterium	1.52E-02
76	GO:0045087: innate immune response	1.60E-02
77	GO:0009751: response to salicylic acid	1.73E-02
78	GO:0051707: response to other organism	1.92E-02
79	GO:0009644: response to high light intensity	2.02E-02
80	GO:0015031: protein transport	2.06E-02
81	GO:0009636: response to toxic substance	2.08E-02
82	GO:0051603: proteolysis involved in cellular protein catabolic process	2.43E-02
83	GO:0009626: plant-type hypersensitive response	2.79E-02
84	GO:0016569: covalent chromatin modification	2.92E-02
85	GO:0006396: RNA processing	3.11E-02
86	GO:0051726: regulation of cell cycle	3.17E-02
87	GO:0016036: cellular response to phosphate starvation	4.27E-02
88	GO:0010150: leaf senescence	4.49E-02
89	GO:0045490: pectin catabolic process	4.49E-02
90	GO:0009739: response to gibberellin	4.86E-02
91	GO:0006470: protein dephosphorylation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0047844: deoxycytidine deaminase activity	0.00E+00
4	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
5	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.65E-06
6	GO:0008320: protein transmembrane transporter activity	3.42E-05
7	GO:0048037: cofactor binding	8.61E-05
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.61E-05
9	GO:0004617: phosphoglycerate dehydrogenase activity	2.04E-04
10	GO:0008428: ribonuclease inhibitor activity	2.04E-04
11	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.04E-04
12	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	2.04E-04
13	GO:0008805: carbon-monoxide oxygenase activity	2.04E-04
14	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.04E-04
15	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.04E-04
16	GO:0030742: GTP-dependent protein binding	2.04E-04
17	GO:0010297: heteropolysaccharide binding	2.04E-04
18	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.42E-04
19	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.42E-04
20	GO:0052655: L-valine transaminase activity	4.92E-04
21	GO:0019201: nucleotide kinase activity	4.92E-04
22	GO:0052656: L-isoleucine transaminase activity	4.92E-04
23	GO:0004165: dodecenoyl-CoA delta-isomerase activity	4.92E-04
24	GO:0052654: L-leucine transaminase activity	4.92E-04
25	GO:0070628: proteasome binding	6.55E-04
26	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.55E-04
27	GO:0008022: protein C-terminus binding	6.55E-04
28	GO:0005086: ARF guanyl-nucleotide exchange factor activity	6.55E-04
29	GO:0009916: alternative oxidase activity	6.55E-04
30	GO:0004084: branched-chain-amino-acid transaminase activity	6.55E-04
31	GO:0008948: oxaloacetate decarboxylase activity	8.29E-04
32	GO:0017137: Rab GTPase binding	8.29E-04
33	GO:0035252: UDP-xylosyltransferase activity	1.01E-03
34	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.18E-03
35	GO:0004017: adenylate kinase activity	1.20E-03
36	GO:0004126: cytidine deaminase activity	1.20E-03
37	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.41E-03
38	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.63E-03
39	GO:0004568: chitinase activity	2.61E-03
40	GO:0015386: potassium:proton antiporter activity	2.87E-03
41	GO:0003774: motor activity	3.73E-03
42	GO:0031624: ubiquitin conjugating enzyme binding	3.73E-03
43	GO:0003824: catalytic activity	3.95E-03
44	GO:0008061: chitin binding	4.03E-03
45	GO:0004190: aspartic-type endopeptidase activity	4.03E-03
46	GO:0003756: protein disulfide isomerase activity	6.36E-03
47	GO:0004402: histone acetyltransferase activity	7.10E-03
48	GO:0001085: RNA polymerase II transcription factor binding	7.48E-03
49	GO:0010181: FMN binding	7.87E-03
50	GO:0015385: sodium:proton antiporter activity	9.48E-03
51	GO:0005507: copper ion binding	9.74E-03
52	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.03E-02
53	GO:0016597: amino acid binding	1.08E-02
54	GO:0061630: ubiquitin protein ligase activity	1.25E-02
55	GO:0008270: zinc ion binding	1.46E-02
56	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.50E-02
57	GO:0003746: translation elongation factor activity	1.60E-02
58	GO:0004364: glutathione transferase activity	1.86E-02
59	GO:0016757: transferase activity, transferring glycosyl groups	2.18E-02
60	GO:0051287: NAD binding	2.19E-02
61	GO:0003779: actin binding	2.98E-02
62	GO:0000166: nucleotide binding	3.12E-02
63	GO:0046872: metal ion binding	3.32E-02
64	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.92E-02
65	GO:0008565: protein transporter activity	4.06E-02
66	GO:0008194: UDP-glycosyltransferase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0046862: chromoplast membrane	0.00E+00
3	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
4	GO:0005783: endoplasmic reticulum	1.95E-04
5	GO:0030134: ER to Golgi transport vesicle	2.04E-04
6	GO:0005794: Golgi apparatus	2.87E-04
7	GO:0005768: endosome	6.22E-04
8	GO:0032580: Golgi cisterna membrane	7.72E-04
9	GO:0016021: integral component of membrane	1.19E-03
10	GO:0030173: integral component of Golgi membrane	1.20E-03
11	GO:0005801: cis-Golgi network	1.20E-03
12	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.41E-03
13	GO:0031982: vesicle	1.63E-03
14	GO:0005742: mitochondrial outer membrane translocase complex	1.86E-03
15	GO:0031901: early endosome membrane	2.10E-03
16	GO:0005802: trans-Golgi network	2.41E-03
17	GO:0016459: myosin complex	2.61E-03
18	GO:0005750: mitochondrial respiratory chain complex III	3.73E-03
19	GO:0070469: respiratory chain	4.98E-03
20	GO:0005839: proteasome core complex	5.32E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.36E-03
22	GO:0005789: endoplasmic reticulum membrane	6.53E-03
23	GO:0016592: mediator complex	9.07E-03
24	GO:0005886: plasma membrane	1.06E-02
25	GO:0030529: intracellular ribonucleoprotein complex	1.12E-02
26	GO:0005788: endoplasmic reticulum lumen	1.17E-02
27	GO:0005667: transcription factor complex	1.21E-02
28	GO:0000151: ubiquitin ligase complex	1.35E-02
29	GO:0005774: vacuolar membrane	2.24E-02
30	GO:0010008: endosome membrane	2.73E-02
31	GO:0005777: peroxisome	3.58E-02