co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0045184: establishment of protein localization	0.00E+00
4	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0015995: chlorophyll biosynthetic process	1.22E-05
8	GO:0040008: regulation of growth	8.71E-05
9	GO:0042793: transcription from plastid promoter	2.07E-04
10	GO:0030488: tRNA methylation	2.80E-04
11	GO:0042659: regulation of cell fate specification	3.94E-04
12	GO:0005980: glycogen catabolic process	3.94E-04
13	GO:0030198: extracellular matrix organization	3.94E-04
14	GO:0006438: valyl-tRNA aminoacylation	3.94E-04
15	GO:0090558: plant epidermis development	3.94E-04
16	GO:0070509: calcium ion import	3.94E-04
17	GO:0010480: microsporocyte differentiation	3.94E-04
18	GO:0042759: long-chain fatty acid biosynthetic process	3.94E-04
19	GO:0035987: endodermal cell differentiation	3.94E-04
20	GO:1902458: positive regulation of stomatal opening	3.94E-04
21	GO:0015904: tetracycline transport	3.94E-04
22	GO:0009790: embryo development	4.20E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.54E-04
24	GO:0009733: response to auxin	5.59E-04
25	GO:0006779: porphyrin-containing compound biosynthetic process	7.83E-04
26	GO:0009638: phototropism	7.83E-04
27	GO:0019388: galactose catabolic process	8.55E-04
28	GO:0018026: peptidyl-lysine monomethylation	8.55E-04
29	GO:0009786: regulation of asymmetric cell division	8.55E-04
30	GO:0031648: protein destabilization	8.55E-04
31	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.55E-04
32	GO:2000123: positive regulation of stomatal complex development	8.55E-04
33	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.55E-04
34	GO:0006782: protoporphyrinogen IX biosynthetic process	9.10E-04
35	GO:0009641: shade avoidance	9.10E-04
36	GO:0010027: thylakoid membrane organization	1.03E-03
37	GO:0010102: lateral root morphogenesis	1.36E-03
38	GO:0090708: specification of plant organ axis polarity	1.39E-03
39	GO:1902448: positive regulation of shade avoidance	1.39E-03
40	GO:0033591: response to L-ascorbic acid	1.39E-03
41	GO:0010020: chloroplast fission	1.53E-03
42	GO:0070588: calcium ion transmembrane transport	1.71E-03
43	GO:0009734: auxin-activated signaling pathway	1.83E-03
44	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.00E-03
45	GO:0009647: skotomorphogenesis	2.00E-03
46	GO:0009590: detection of gravity	2.00E-03
47	GO:0007231: osmosensory signaling pathway	2.00E-03
48	GO:0009102: biotin biosynthetic process	2.00E-03
49	GO:0006631: fatty acid metabolic process	2.43E-03
50	GO:0009765: photosynthesis, light harvesting	2.69E-03
51	GO:0030104: water homeostasis	2.69E-03
52	GO:0033500: carbohydrate homeostasis	2.69E-03
53	GO:2000038: regulation of stomatal complex development	2.69E-03
54	GO:0006808: regulation of nitrogen utilization	2.69E-03
55	GO:0009640: photomorphogenesis	2.70E-03
56	GO:0016042: lipid catabolic process	3.38E-03
57	GO:0010375: stomatal complex patterning	3.44E-03
58	GO:0000304: response to singlet oxygen	3.44E-03
59	GO:0016120: carotene biosynthetic process	3.44E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	3.44E-03
61	GO:0048497: maintenance of floral organ identity	3.44E-03
62	GO:0016123: xanthophyll biosynthetic process	3.44E-03
63	GO:0009793: embryo development ending in seed dormancy	3.63E-03
64	GO:0010305: leaf vascular tissue pattern formation	4.21E-03
65	GO:0010182: sugar mediated signaling pathway	4.21E-03
66	GO:0016554: cytidine to uridine editing	4.26E-03
67	GO:0009913: epidermal cell differentiation	4.26E-03
68	GO:1902456: regulation of stomatal opening	4.26E-03
69	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.26E-03
70	GO:0033365: protein localization to organelle	4.26E-03
71	GO:0010405: arabinogalactan protein metabolic process	4.26E-03
72	GO:0042372: phylloquinone biosynthetic process	5.13E-03
73	GO:2000033: regulation of seed dormancy process	5.13E-03
74	GO:2000067: regulation of root morphogenesis	5.13E-03
75	GO:0009658: chloroplast organization	5.27E-03
76	GO:0032502: developmental process	5.56E-03
77	GO:0048437: floral organ development	6.06E-03
78	GO:0010444: guard mother cell differentiation	6.06E-03
79	GO:0048528: post-embryonic root development	6.06E-03
80	GO:0009742: brassinosteroid mediated signaling pathway	6.67E-03
81	GO:0005978: glycogen biosynthetic process	7.05E-03
82	GO:0046620: regulation of organ growth	7.05E-03
83	GO:2000070: regulation of response to water deprivation	7.05E-03
84	GO:0055075: potassium ion homeostasis	7.05E-03
85	GO:0000105: histidine biosynthetic process	7.05E-03
86	GO:0009231: riboflavin biosynthetic process	7.05E-03
87	GO:0006508: proteolysis	7.42E-03
88	GO:0007186: G-protein coupled receptor signaling pathway	8.09E-03
89	GO:0006526: arginine biosynthetic process	8.09E-03
90	GO:0032544: plastid translation	8.09E-03
91	GO:0015996: chlorophyll catabolic process	8.09E-03
92	GO:0051865: protein autoubiquitination	9.18E-03
93	GO:0048507: meristem development	9.18E-03
94	GO:0046916: cellular transition metal ion homeostasis	9.18E-03
95	GO:0000902: cell morphogenesis	9.18E-03
96	GO:0009416: response to light stimulus	9.71E-03
97	GO:1900865: chloroplast RNA modification	1.03E-02
98	GO:2000280: regulation of root development	1.03E-02
99	GO:0031425: chloroplast RNA processing	1.03E-02
100	GO:0009813: flavonoid biosynthetic process	1.04E-02
101	GO:0010162: seed dormancy process	1.15E-02
102	GO:0048829: root cap development	1.15E-02
103	GO:0045036: protein targeting to chloroplast	1.15E-02
104	GO:0006816: calcium ion transport	1.28E-02
105	GO:0009073: aromatic amino acid family biosynthetic process	1.28E-02
106	GO:0048229: gametophyte development	1.28E-02
107	GO:0012501: programmed cell death	1.41E-02
108	GO:0005983: starch catabolic process	1.41E-02
109	GO:0045037: protein import into chloroplast stroma	1.41E-02
110	GO:0030001: metal ion transport	1.43E-02
111	GO:0007166: cell surface receptor signaling pathway	1.48E-02
112	GO:0010588: cotyledon vascular tissue pattern formation	1.54E-02
113	GO:2000012: regulation of auxin polar transport	1.54E-02
114	GO:0009785: blue light signaling pathway	1.54E-02
115	GO:0006006: glucose metabolic process	1.54E-02
116	GO:0050826: response to freezing	1.54E-02
117	GO:0010075: regulation of meristem growth	1.54E-02
118	GO:0006468: protein phosphorylation	1.64E-02
119	GO:0010207: photosystem II assembly	1.68E-02
120	GO:0009266: response to temperature stimulus	1.68E-02
121	GO:0009934: regulation of meristem structural organization	1.68E-02
122	GO:0090351: seedling development	1.82E-02
123	GO:0000162: tryptophan biosynthetic process	1.96E-02
124	GO:0010025: wax biosynthetic process	1.96E-02
125	GO:0006833: water transport	1.96E-02
126	GO:0006418: tRNA aminoacylation for protein translation	2.27E-02
127	GO:0051302: regulation of cell division	2.27E-02
128	GO:0031408: oxylipin biosynthetic process	2.43E-02
129	GO:0048511: rhythmic process	2.43E-02
130	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.59E-02
131	GO:0010082: regulation of root meristem growth	2.75E-02
132	GO:0009294: DNA mediated transformation	2.75E-02
133	GO:0016117: carotenoid biosynthetic process	3.09E-02
134	GO:0080022: primary root development	3.27E-02
135	GO:0000413: protein peptidyl-prolyl isomerization	3.27E-02
136	GO:0010087: phloem or xylem histogenesis	3.27E-02
137	GO:0010118: stomatal movement	3.27E-02
138	GO:0048653: anther development	3.27E-02
139	GO:0009960: endosperm development	3.45E-02
140	GO:0006520: cellular amino acid metabolic process	3.45E-02
141	GO:0006662: glycerol ether metabolic process	3.45E-02
142	GO:0045892: negative regulation of transcription, DNA-templated	3.62E-02
143	GO:0048544: recognition of pollen	3.63E-02
144	GO:0007018: microtubule-based movement	3.63E-02
145	GO:0042752: regulation of circadian rhythm	3.63E-02
146	GO:0048825: cotyledon development	3.82E-02
147	GO:0019252: starch biosynthetic process	3.82E-02
148	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.01E-02
149	GO:0009058: biosynthetic process	4.10E-02
150	GO:0010583: response to cyclopentenone	4.20E-02
151	GO:0016032: viral process	4.20E-02
152	GO:0030163: protein catabolic process	4.39E-02
153	GO:1901657: glycosyl compound metabolic process	4.39E-02
154	GO:0007165: signal transduction	4.55E-02
155	GO:0007267: cell-cell signaling	4.79E-02
156	GO:0051607: defense response to virus	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0005201: extracellular matrix structural constituent	0.00E+00
7	GO:0004076: biotin synthase activity	0.00E+00
8	GO:0005504: fatty acid binding	2.42E-05
9	GO:0001872: (1->3)-beta-D-glucan binding	5.29E-05
10	GO:0045430: chalcone isomerase activity	9.33E-05
11	GO:0004176: ATP-dependent peptidase activity	2.56E-04
12	GO:0008184: glycogen phosphorylase activity	3.94E-04
13	GO:0050308: sugar-phosphatase activity	3.94E-04
14	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	3.94E-04
15	GO:0004645: phosphorylase activity	3.94E-04
16	GO:0009374: biotin binding	3.94E-04
17	GO:0019203: carbohydrate phosphatase activity	3.94E-04
18	GO:0004832: valine-tRNA ligase activity	3.94E-04
19	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.94E-04
20	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.94E-04
21	GO:0050139: nicotinate-N-glucosyltransferase activity	3.94E-04
22	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.94E-04
23	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.94E-04
24	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.94E-04
25	GO:0008493: tetracycline transporter activity	8.55E-04
26	GO:0016630: protochlorophyllide reductase activity	8.55E-04
27	GO:0004614: phosphoglucomutase activity	8.55E-04
28	GO:0008237: metallopeptidase activity	8.95E-04
29	GO:0031072: heat shock protein binding	1.36E-03
30	GO:0005262: calcium channel activity	1.36E-03
31	GO:0070330: aromatase activity	1.39E-03
32	GO:0017150: tRNA dihydrouridine synthase activity	1.39E-03
33	GO:0016805: dipeptidase activity	1.39E-03
34	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.39E-03
35	GO:0004180: carboxypeptidase activity	1.39E-03
36	GO:0016851: magnesium chelatase activity	2.00E-03
37	GO:0043023: ribosomal large subunit binding	2.00E-03
38	GO:0005528: FK506 binding	2.12E-03
39	GO:0052689: carboxylic ester hydrolase activity	2.14E-03
40	GO:0019199: transmembrane receptor protein kinase activity	2.69E-03
41	GO:0016279: protein-lysine N-methyltransferase activity	2.69E-03
42	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.69E-03
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.28E-03
44	GO:0018685: alkane 1-monooxygenase activity	3.44E-03
45	GO:0003989: acetyl-CoA carboxylase activity	3.44E-03
46	GO:0016208: AMP binding	4.26E-03
47	GO:2001070: starch binding	4.26E-03
48	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.26E-03
49	GO:0016832: aldehyde-lyase activity	5.13E-03
50	GO:0051753: mannan synthase activity	5.13E-03
51	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.13E-03
52	GO:0016788: hydrolase activity, acting on ester bonds	5.42E-03
53	GO:0046914: transition metal ion binding	8.09E-03
54	GO:0008173: RNA methyltransferase activity	8.09E-03
55	GO:0030247: polysaccharide binding	8.89E-03
56	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.18E-03
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	9.86E-03
58	GO:0004871: signal transducer activity	1.03E-02
59	GO:0004674: protein serine/threonine kinase activity	1.06E-02
60	GO:0005524: ATP binding	1.11E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.14E-02
62	GO:0047372: acylglycerol lipase activity	1.28E-02
63	GO:0004519: endonuclease activity	1.50E-02
64	GO:0015266: protein channel activity	1.54E-02
65	GO:0008266: poly(U) RNA binding	1.68E-02
66	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.68E-02
67	GO:0043621: protein self-association	1.75E-02
68	GO:0035091: phosphatidylinositol binding	1.75E-02
69	GO:0008146: sulfotransferase activity	1.82E-02
70	GO:0003712: transcription cofactor activity	1.82E-02
71	GO:0004190: aspartic-type endopeptidase activity	1.82E-02
72	GO:0046983: protein dimerization activity	2.01E-02
73	GO:0051536: iron-sulfur cluster binding	2.11E-02
74	GO:0016298: lipase activity	2.26E-02
75	GO:0043424: protein histidine kinase binding	2.27E-02
76	GO:0003777: microtubule motor activity	2.42E-02
77	GO:0033612: receptor serine/threonine kinase binding	2.43E-02
78	GO:0003756: protein disulfide isomerase activity	2.92E-02
79	GO:0003727: single-stranded RNA binding	2.92E-02
80	GO:0047134: protein-disulfide reductase activity	3.09E-02
81	GO:0004812: aminoacyl-tRNA ligase activity	3.09E-02
82	GO:0051082: unfolded protein binding	3.11E-02
83	GO:0015035: protein disulfide oxidoreductase activity	3.21E-02
84	GO:0001085: RNA polymerase II transcription factor binding	3.45E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	3.63E-02
86	GO:0016301: kinase activity	3.75E-02
87	GO:0042803: protein homodimerization activity	3.76E-02
88	GO:0019901: protein kinase binding	3.82E-02
89	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.00E-02
90	GO:0004518: nuclease activity	4.20E-02
91	GO:0030170: pyridoxal phosphate binding	4.32E-02
92	GO:0000156: phosphorelay response regulator activity	4.39E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.39E-02
94	GO:0016759: cellulose synthase activity	4.59E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.63E-02
96	GO:0008483: transaminase activity	4.79E-02
97	GO:0005200: structural constituent of cytoskeleton	4.79E-02
98	GO:0016597: amino acid binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.51E-10
2	GO:0009941: chloroplast envelope	1.76E-09
3	GO:0009570: chloroplast stroma	1.62E-07
4	GO:0009534: chloroplast thylakoid	2.99E-07
5	GO:0009508: plastid chromosome	3.38E-06
6	GO:0009295: nucleoid	9.77E-05
7	GO:0031357: integral component of chloroplast inner membrane	8.55E-04
8	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.55E-04
9	GO:0010319: stromule	8.95E-04
10	GO:0009528: plastid inner membrane	1.39E-03
11	GO:0010007: magnesium chelatase complex	1.39E-03
12	GO:0030139: endocytic vesicle	1.39E-03
13	GO:0009317: acetyl-CoA carboxylase complex	1.39E-03
14	GO:0032585: multivesicular body membrane	2.00E-03
15	GO:0005886: plasma membrane	2.00E-03
16	GO:0009532: plastid stroma	2.57E-03
17	GO:0009527: plastid outer membrane	2.69E-03
18	GO:0009535: chloroplast thylakoid membrane	3.33E-03
19	GO:0046658: anchored component of plasma membrane	4.15E-03
20	GO:0009986: cell surface	6.06E-03
21	GO:0009533: chloroplast stromal thylakoid	6.06E-03
22	GO:0009536: plastid	6.09E-03
23	GO:0048226: Casparian strip	7.05E-03
24	GO:0009543: chloroplast thylakoid lumen	8.26E-03
25	GO:0009707: chloroplast outer membrane	9.86E-03
26	GO:0000418: DNA-directed RNA polymerase IV complex	1.15E-02
27	GO:0090404: pollen tube tip	1.28E-02
28	GO:0043234: protein complex	1.96E-02
29	GO:0031225: anchored component of membrane	2.09E-02
30	GO:0042651: thylakoid membrane	2.27E-02
31	GO:0005874: microtubule	2.72E-02
32	GO:0015629: actin cytoskeleton	2.75E-02
33	GO:0031969: chloroplast membrane	2.84E-02
34	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.92E-02
35	GO:0005871: kinesin complex	3.09E-02
36	GO:0005778: peroxisomal membrane	4.79E-02