GO Enrichment Analysis of Co-expressed Genes with
AT4G29400
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009069: serine family amino acid metabolic process | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0070178: D-serine metabolic process | 0.00E+00 |
| 5 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 6 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 9 | GO:0006418: tRNA aminoacylation for protein translation | 5.49E-06 |
| 10 | GO:0006353: DNA-templated transcription, termination | 3.42E-05 |
| 11 | GO:0010027: thylakoid membrane organization | 3.94E-05 |
| 12 | GO:0032544: plastid translation | 4.37E-05 |
| 13 | GO:0043686: co-translational protein modification | 7.23E-05 |
| 14 | GO:0005991: trehalose metabolic process | 7.23E-05 |
| 15 | GO:0005980: glycogen catabolic process | 7.23E-05 |
| 16 | GO:0000476: maturation of 4.5S rRNA | 7.23E-05 |
| 17 | GO:0000967: rRNA 5'-end processing | 7.23E-05 |
| 18 | GO:1902478: negative regulation of defense response to bacterium, incompatible interaction | 7.23E-05 |
| 19 | GO:0034470: ncRNA processing | 1.74E-04 |
| 20 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.74E-04 |
| 21 | GO:0018026: peptidyl-lysine monomethylation | 1.74E-04 |
| 22 | GO:0034051: negative regulation of plant-type hypersensitive response | 2.93E-04 |
| 23 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 4.23E-04 |
| 24 | GO:0009102: biotin biosynthetic process | 4.23E-04 |
| 25 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.23E-04 |
| 26 | GO:0046739: transport of virus in multicellular host | 4.23E-04 |
| 27 | GO:0006221: pyrimidine nucleotide biosynthetic process | 5.65E-04 |
| 28 | GO:0031365: N-terminal protein amino acid modification | 7.14E-04 |
| 29 | GO:0007094: mitotic spindle assembly checkpoint | 7.14E-04 |
| 30 | GO:0032543: mitochondrial translation | 7.14E-04 |
| 31 | GO:0015995: chlorophyll biosynthetic process | 8.59E-04 |
| 32 | GO:0006563: L-serine metabolic process | 8.73E-04 |
| 33 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 8.73E-04 |
| 34 | GO:0042793: transcription from plastid promoter | 8.73E-04 |
| 35 | GO:0009955: adaxial/abaxial pattern specification | 1.04E-03 |
| 36 | GO:0042026: protein refolding | 1.04E-03 |
| 37 | GO:1901259: chloroplast rRNA processing | 1.04E-03 |
| 38 | GO:0009658: chloroplast organization | 1.05E-03 |
| 39 | GO:0042255: ribosome assembly | 1.40E-03 |
| 40 | GO:0070413: trehalose metabolism in response to stress | 1.40E-03 |
| 41 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.59E-03 |
| 42 | GO:0009657: plastid organization | 1.59E-03 |
| 43 | GO:0043067: regulation of programmed cell death | 2.01E-03 |
| 44 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.01E-03 |
| 45 | GO:0045036: protein targeting to chloroplast | 2.23E-03 |
| 46 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.23E-03 |
| 47 | GO:0006415: translational termination | 2.46E-03 |
| 48 | GO:0005983: starch catabolic process | 2.70E-03 |
| 49 | GO:0009266: response to temperature stimulus | 3.19E-03 |
| 50 | GO:0010207: photosystem II assembly | 3.19E-03 |
| 51 | GO:0006508: proteolysis | 3.52E-03 |
| 52 | GO:0005992: trehalose biosynthetic process | 3.98E-03 |
| 53 | GO:0009790: embryo development | 4.16E-03 |
| 54 | GO:0006633: fatty acid biosynthetic process | 4.47E-03 |
| 55 | GO:0051321: meiotic cell cycle | 4.54E-03 |
| 56 | GO:0007005: mitochondrion organization | 4.83E-03 |
| 57 | GO:0009686: gibberellin biosynthetic process | 5.13E-03 |
| 58 | GO:0006662: glycerol ether metabolic process | 6.38E-03 |
| 59 | GO:0010197: polar nucleus fusion | 6.38E-03 |
| 60 | GO:0010182: sugar mediated signaling pathway | 6.38E-03 |
| 61 | GO:0010268: brassinosteroid homeostasis | 6.38E-03 |
| 62 | GO:0007059: chromosome segregation | 6.70E-03 |
| 63 | GO:0016132: brassinosteroid biosynthetic process | 7.38E-03 |
| 64 | GO:0071554: cell wall organization or biogenesis | 7.38E-03 |
| 65 | GO:0032502: developmental process | 7.72E-03 |
| 66 | GO:0016125: sterol metabolic process | 8.43E-03 |
| 67 | GO:0009627: systemic acquired resistance | 1.03E-02 |
| 68 | GO:0008219: cell death | 1.15E-02 |
| 69 | GO:0009817: defense response to fungus, incompatible interaction | 1.15E-02 |
| 70 | GO:0048481: plant ovule development | 1.15E-02 |
| 71 | GO:0009832: plant-type cell wall biogenesis | 1.19E-02 |
| 72 | GO:0034599: cellular response to oxidative stress | 1.40E-02 |
| 73 | GO:0009409: response to cold | 1.67E-02 |
| 74 | GO:0042538: hyperosmotic salinity response | 1.91E-02 |
| 75 | GO:0006364: rRNA processing | 2.01E-02 |
| 76 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.06E-02 |
| 77 | GO:0048367: shoot system development | 2.31E-02 |
| 78 | GO:0006396: RNA processing | 2.64E-02 |
| 79 | GO:0009742: brassinosteroid mediated signaling pathway | 2.69E-02 |
| 80 | GO:0051301: cell division | 2.70E-02 |
| 81 | GO:0006412: translation | 2.89E-02 |
| 82 | GO:0006457: protein folding | 3.21E-02 |
| 83 | GO:0009793: embryo development ending in seed dormancy | 3.26E-02 |
| 84 | GO:0042744: hydrogen peroxide catabolic process | 3.32E-02 |
| 85 | GO:0006413: translational initiation | 3.63E-02 |
| 86 | GO:0040008: regulation of growth | 3.69E-02 |
| 87 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.94E-02 |
| 88 | GO:0006470: protein dephosphorylation | 4.19E-02 |
| 89 | GO:0008380: RNA splicing | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 4 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 5 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 6 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 7 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 8 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 9 | GO:0030378: serine racemase activity | 0.00E+00 |
| 10 | GO:0003941: L-serine ammonia-lyase activity | 0.00E+00 |
| 11 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 12 | GO:0008721: D-serine ammonia-lyase activity | 0.00E+00 |
| 13 | GO:0002161: aminoacyl-tRNA editing activity | 1.12E-06 |
| 14 | GO:0004812: aminoacyl-tRNA ligase activity | 1.18E-05 |
| 15 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 7.23E-05 |
| 16 | GO:0008184: glycogen phosphorylase activity | 7.23E-05 |
| 17 | GO:0050308: sugar-phosphatase activity | 7.23E-05 |
| 18 | GO:0042586: peptide deformylase activity | 7.23E-05 |
| 19 | GO:0051777: ent-kaurenoate oxidase activity | 7.23E-05 |
| 20 | GO:0004856: xylulokinase activity | 7.23E-05 |
| 21 | GO:0004645: phosphorylase activity | 7.23E-05 |
| 22 | GO:0019203: carbohydrate phosphatase activity | 7.23E-05 |
| 23 | GO:0004817: cysteine-tRNA ligase activity | 1.74E-04 |
| 24 | GO:0016630: protochlorophyllide reductase activity | 1.74E-04 |
| 25 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.74E-04 |
| 26 | GO:0019843: rRNA binding | 4.09E-04 |
| 27 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 4.23E-04 |
| 28 | GO:0009041: uridylate kinase activity | 4.23E-04 |
| 29 | GO:0016149: translation release factor activity, codon specific | 4.23E-04 |
| 30 | GO:0016279: protein-lysine N-methyltransferase activity | 5.65E-04 |
| 31 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.14E-04 |
| 32 | GO:0003959: NADPH dehydrogenase activity | 7.14E-04 |
| 33 | GO:2001070: starch binding | 8.73E-04 |
| 34 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.04E-03 |
| 35 | GO:0004525: ribonuclease III activity | 1.40E-03 |
| 36 | GO:0005525: GTP binding | 1.76E-03 |
| 37 | GO:0003747: translation release factor activity | 1.80E-03 |
| 38 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.80E-03 |
| 39 | GO:0008559: xenobiotic-transporting ATPase activity | 2.46E-03 |
| 40 | GO:0044183: protein binding involved in protein folding | 2.46E-03 |
| 41 | GO:0000049: tRNA binding | 2.70E-03 |
| 42 | GO:0008266: poly(U) RNA binding | 3.19E-03 |
| 43 | GO:0030170: pyridoxal phosphate binding | 3.96E-03 |
| 44 | GO:0003727: single-stranded RNA binding | 5.43E-03 |
| 45 | GO:0047134: protein-disulfide reductase activity | 5.74E-03 |
| 46 | GO:0004791: thioredoxin-disulfide reductase activity | 6.70E-03 |
| 47 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.07E-03 |
| 48 | GO:0016791: phosphatase activity | 8.43E-03 |
| 49 | GO:0008237: metallopeptidase activity | 8.79E-03 |
| 50 | GO:0016413: O-acetyltransferase activity | 9.16E-03 |
| 51 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.15E-02 |
| 52 | GO:0004222: metalloendopeptidase activity | 1.23E-02 |
| 53 | GO:0003924: GTPase activity | 1.39E-02 |
| 54 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.49E-02 |
| 55 | GO:0016491: oxidoreductase activity | 1.61E-02 |
| 56 | GO:0004185: serine-type carboxypeptidase activity | 1.63E-02 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.72E-02 |
| 58 | GO:0043621: protein self-association | 1.72E-02 |
| 59 | GO:0003723: RNA binding | 1.78E-02 |
| 60 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.81E-02 |
| 61 | GO:0003690: double-stranded DNA binding | 2.06E-02 |
| 62 | GO:0051082: unfolded protein binding | 2.58E-02 |
| 63 | GO:0015035: protein disulfide oxidoreductase activity | 2.64E-02 |
| 64 | GO:0008026: ATP-dependent helicase activity | 2.69E-02 |
| 65 | GO:0003735: structural constituent of ribosome | 2.70E-02 |
| 66 | GO:0016787: hydrolase activity | 2.96E-02 |
| 67 | GO:0004252: serine-type endopeptidase activity | 3.26E-02 |
| 68 | GO:0005507: copper ion binding | 3.52E-02 |
| 69 | GO:0003743: translation initiation factor activity | 4.26E-02 |
| 70 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.52E-02 |
| 71 | GO:0042802: identical protein binding | 4.52E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.16E-22 |
| 4 | GO:0009570: chloroplast stroma | 9.77E-13 |
| 5 | GO:0009295: nucleoid | 7.17E-07 |
| 6 | GO:0009508: plastid chromosome | 2.04E-06 |
| 7 | GO:0009547: plastid ribosome | 7.23E-05 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 9.39E-05 |
| 9 | GO:0009536: plastid | 1.30E-04 |
| 10 | GO:0031969: chloroplast membrane | 1.83E-04 |
| 11 | GO:0009579: thylakoid | 1.84E-04 |
| 12 | GO:0009706: chloroplast inner membrane | 3.05E-04 |
| 13 | GO:0005828: kinetochore microtubule | 5.65E-04 |
| 14 | GO:0009941: chloroplast envelope | 5.74E-04 |
| 15 | GO:0000776: kinetochore | 7.14E-04 |
| 16 | GO:0009707: chloroplast outer membrane | 9.46E-04 |
| 17 | GO:0000777: condensed chromosome kinetochore | 1.04E-03 |
| 18 | GO:0009534: chloroplast thylakoid | 1.10E-03 |
| 19 | GO:0005763: mitochondrial small ribosomal subunit | 1.80E-03 |
| 20 | GO:0005876: spindle microtubule | 2.01E-03 |
| 21 | GO:0000311: plastid large ribosomal subunit | 2.70E-03 |
| 22 | GO:0015935: small ribosomal subunit | 4.54E-03 |
| 23 | GO:0010319: stromule | 8.79E-03 |
| 24 | GO:0000325: plant-type vacuole | 1.27E-02 |
| 25 | GO:0031977: thylakoid lumen | 1.54E-02 |
| 26 | GO:0022626: cytosolic ribosome | 2.37E-02 |
| 27 | GO:0005739: mitochondrion | 2.84E-02 |
| 28 | GO:0009543: chloroplast thylakoid lumen | 3.03E-02 |
| 29 | GO:0005623: cell | 3.09E-02 |
| 30 | GO:0009524: phragmoplast | 3.15E-02 |
| 31 | GO:0005615: extracellular space | 4.13E-02 |
| 32 | GO:0005622: intracellular | 4.38E-02 |
| 33 | GO:0046658: anchored component of plasma membrane | 4.65E-02 |