co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0000819: sister chromatid segregation	0.00E+00
3	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
4	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
5	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0006907: pinocytosis	0.00E+00
8	GO:0009733: response to auxin	2.82E-04
9	GO:0006438: valyl-tRNA aminoacylation	3.34E-04
10	GO:0046520: sphingoid biosynthetic process	3.34E-04
11	GO:0051641: cellular localization	3.34E-04
12	GO:0048016: inositol phosphate-mediated signaling	3.34E-04
13	GO:0006351: transcription, DNA-templated	4.20E-04
14	GO:0010583: response to cyclopentenone	5.20E-04
15	GO:1901529: positive regulation of anion channel activity	7.29E-04
16	GO:0006741: NADP biosynthetic process	7.29E-04
17	GO:0061062: regulation of nematode larval development	7.29E-04
18	GO:0009786: regulation of asymmetric cell division	7.29E-04
19	GO:0031648: protein destabilization	7.29E-04
20	GO:0010588: cotyledon vascular tissue pattern formation	1.07E-03
21	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.18E-03
22	GO:0019674: NAD metabolic process	1.18E-03
23	GO:0090506: axillary shoot meristem initiation	1.18E-03
24	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.18E-03
25	GO:0009887: animal organ morphogenesis	1.21E-03
26	GO:0007276: gamete generation	1.70E-03
27	GO:0016556: mRNA modification	1.70E-03
28	GO:0010321: regulation of vegetative phase change	1.70E-03
29	GO:0019363: pyridine nucleotide biosynthetic process	1.70E-03
30	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.70E-03
31	GO:0000914: phragmoplast assembly	2.28E-03
32	GO:0007020: microtubule nucleation	2.28E-03
33	GO:0031122: cytoplasmic microtubule organization	2.28E-03
34	GO:0042991: transcription factor import into nucleus	2.28E-03
35	GO:0048629: trichome patterning	2.28E-03
36	GO:0042127: regulation of cell proliferation	2.62E-03
37	GO:0009736: cytokinin-activated signaling pathway	2.89E-03
38	GO:0032957: inositol trisphosphate metabolic process	2.91E-03
39	GO:0016131: brassinosteroid metabolic process	2.91E-03
40	GO:0046785: microtubule polymerization	2.91E-03
41	GO:0048497: maintenance of floral organ identity	2.91E-03
42	GO:0010305: leaf vascular tissue pattern formation	3.30E-03
43	GO:0016554: cytidine to uridine editing	3.60E-03
44	GO:0046855: inositol phosphate dephosphorylation	3.60E-03
45	GO:1902456: regulation of stomatal opening	3.60E-03
46	GO:0003006: developmental process involved in reproduction	3.60E-03
47	GO:0009734: auxin-activated signaling pathway	4.22E-03
48	GO:0010067: procambium histogenesis	4.33E-03
49	GO:1900056: negative regulation of leaf senescence	5.11E-03
50	GO:0030497: fatty acid elongation	5.11E-03
51	GO:0000082: G1/S transition of mitotic cell cycle	5.11E-03
52	GO:0010444: guard mother cell differentiation	5.11E-03
53	GO:0010103: stomatal complex morphogenesis	5.11E-03
54	GO:0000712: resolution of meiotic recombination intermediates	5.11E-03
55	GO:0000910: cytokinesis	5.57E-03
56	GO:0006355: regulation of transcription, DNA-templated	5.93E-03
57	GO:0046620: regulation of organ growth	5.94E-03
58	GO:0009704: de-etiolation	5.94E-03
59	GO:0010492: maintenance of shoot apical meristem identity	5.94E-03
60	GO:0045892: negative regulation of transcription, DNA-templated	6.77E-03
61	GO:0048507: meristem development	7.73E-03
62	GO:0051865: protein autoubiquitination	7.73E-03
63	GO:0048589: developmental growth	7.73E-03
64	GO:0009056: catabolic process	7.73E-03
65	GO:0000160: phosphorelay signal transduction system	8.09E-03
66	GO:1900865: chloroplast RNA modification	8.68E-03
67	GO:0016042: lipid catabolic process	8.70E-03
68	GO:0048829: root cap development	9.69E-03
69	GO:0009641: shade avoidance	9.69E-03
70	GO:0006949: syncytium formation	9.69E-03
71	GO:0006259: DNA metabolic process	9.69E-03
72	GO:0008285: negative regulation of cell proliferation	1.07E-02
73	GO:0006265: DNA topological change	1.07E-02
74	GO:0046856: phosphatidylinositol dephosphorylation	1.07E-02
75	GO:0012501: programmed cell death	1.18E-02
76	GO:0010582: floral meristem determinacy	1.18E-02
77	GO:0010152: pollen maturation	1.18E-02
78	GO:0006312: mitotic recombination	1.18E-02
79	GO:0010102: lateral root morphogenesis	1.29E-02
80	GO:0048467: gynoecium development	1.41E-02
81	GO:0007034: vacuolar transport	1.41E-02
82	GO:0010223: secondary shoot formation	1.41E-02
83	GO:0006302: double-strand break repair	1.41E-02
84	GO:0048768: root hair cell tip growth	1.41E-02
85	GO:0090351: seedling development	1.53E-02
86	GO:0006636: unsaturated fatty acid biosynthetic process	1.65E-02
87	GO:0006863: purine nucleobase transport	1.65E-02
88	GO:0009735: response to cytokinin	1.89E-02
89	GO:0006418: tRNA aminoacylation for protein translation	1.90E-02
90	GO:0019953: sexual reproduction	1.90E-02
91	GO:0048366: leaf development	1.95E-02
92	GO:0051321: meiotic cell cycle	2.03E-02
93	GO:0016114: terpenoid biosynthetic process	2.03E-02
94	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.17E-02
95	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.17E-02
96	GO:0071215: cellular response to abscisic acid stimulus	2.31E-02
97	GO:0009686: gibberellin biosynthetic process	2.31E-02
98	GO:0001944: vasculature development	2.31E-02
99	GO:0009624: response to nematode	2.43E-02
100	GO:0048443: stamen development	2.45E-02
101	GO:0010091: trichome branching	2.45E-02
102	GO:0080022: primary root development	2.74E-02
103	GO:0010051: xylem and phloem pattern formation	2.74E-02
104	GO:0010087: phloem or xylem histogenesis	2.74E-02
105	GO:0010118: stomatal movement	2.74E-02
106	GO:0009958: positive gravitropism	2.89E-02
107	GO:0010182: sugar mediated signaling pathway	2.89E-02
108	GO:0009741: response to brassinosteroid	2.89E-02
109	GO:0007018: microtubule-based movement	3.05E-02
110	GO:0007059: chromosome segregation	3.05E-02
111	GO:0009646: response to absence of light	3.05E-02
112	GO:0048825: cotyledon development	3.20E-02
113	GO:0071554: cell wall organization or biogenesis	3.36E-02
114	GO:0016132: brassinosteroid biosynthetic process	3.36E-02
115	GO:0032502: developmental process	3.52E-02
116	GO:0048364: root development	3.57E-02
117	GO:0030163: protein catabolic process	3.69E-02
118	GO:1901657: glycosyl compound metabolic process	3.69E-02
119	GO:0019760: glucosinolate metabolic process	3.85E-02
120	GO:0009828: plant-type cell wall loosening	3.85E-02
121	GO:0040008: regulation of growth	4.01E-02
122	GO:0051607: defense response to virus	4.19E-02
123	GO:0010027: thylakoid membrane organization	4.37E-02
124	GO:0016126: sterol biosynthetic process	4.37E-02
125	GO:0006470: protein dephosphorylation	4.78E-02
126	GO:0007166: cell surface receptor signaling pathway	4.78E-02
127	GO:0048573: photoperiodism, flowering	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
6	GO:0046030: inositol trisphosphate phosphatase activity	3.34E-04
7	GO:0004832: valine-tRNA ligase activity	3.34E-04
8	GO:0042736: NADH kinase activity	3.34E-04
9	GO:0000170: sphingosine hydroxylase activity	3.34E-04
10	GO:0042284: sphingolipid delta-4 desaturase activity	7.29E-04
11	GO:0010296: prenylcysteine methylesterase activity	7.29E-04
12	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.29E-04
13	GO:0003916: DNA topoisomerase activity	1.70E-03
14	GO:0004722: protein serine/threonine phosphatase activity	1.88E-03
15	GO:0008408: 3'-5' exonuclease activity	2.02E-03
16	GO:0019199: transmembrane receptor protein kinase activity	2.28E-03
17	GO:0010011: auxin binding	2.28E-03
18	GO:0004523: RNA-DNA hybrid ribonuclease activity	2.91E-03
19	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.91E-03
20	GO:0016853: isomerase activity	3.55E-03
21	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.60E-03
22	GO:0004709: MAP kinase kinase kinase activity	3.60E-03
23	GO:0016832: aldehyde-lyase activity	4.33E-03
24	GO:0004518: nuclease activity	4.35E-03
25	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.57E-03
26	GO:0000156: phosphorelay response regulator activity	4.64E-03
27	GO:0052689: carboxylic ester hydrolase activity	5.85E-03
28	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.81E-03
29	GO:0003951: NAD+ kinase activity	6.81E-03
30	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.81E-03
31	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	8.91E-03
32	GO:0009055: electron carrier activity	1.01E-02
33	GO:0004519: endonuclease activity	1.03E-02
34	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.18E-02
35	GO:0003725: double-stranded RNA binding	1.29E-02
36	GO:0043621: protein self-association	1.37E-02
37	GO:0043565: sequence-specific DNA binding	1.42E-02
38	GO:0004672: protein kinase activity	1.50E-02
39	GO:0003712: transcription cofactor activity	1.53E-02
40	GO:0004190: aspartic-type endopeptidase activity	1.53E-02
41	GO:0016788: hydrolase activity, acting on ester bonds	1.63E-02
42	GO:0016298: lipase activity	1.77E-02
43	GO:0005345: purine nucleobase transmembrane transporter activity	1.90E-02
44	GO:0008094: DNA-dependent ATPase activity	2.03E-02
45	GO:0033612: receptor serine/threonine kinase binding	2.03E-02
46	GO:0010333: terpene synthase activity	2.03E-02
47	GO:0030570: pectate lyase activity	2.31E-02
48	GO:0003779: actin binding	2.36E-02
49	GO:0004812: aminoacyl-tRNA ligase activity	2.60E-02
50	GO:0004871: signal transducer activity	2.77E-02
51	GO:0042803: protein homodimerization activity	2.77E-02
52	GO:0001085: RNA polymerase II transcription factor binding	2.89E-02
53	GO:0004527: exonuclease activity	2.89E-02
54	GO:0005199: structural constituent of cell wall	2.89E-02
55	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.89E-02
56	GO:0050662: coenzyme binding	3.05E-02
57	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.47E-02
58	GO:0004842: ubiquitin-protein transferase activity	3.67E-02
59	GO:0051015: actin filament binding	3.69E-02
60	GO:0016791: phosphatase activity	3.85E-02
61	GO:0016759: cellulose synthase activity	3.85E-02
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.91E-02
63	GO:0005200: structural constituent of cytoskeleton	4.02E-02
64	GO:0016413: O-acetyltransferase activity	4.19E-02
65	GO:0102483: scopolin beta-glucosidase activity	4.90E-02
66	GO:0004721: phosphoprotein phosphatase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	3.34E-04
3	GO:0030870: Mre11 complex	7.29E-04
4	GO:0030139: endocytic vesicle	1.18E-03
5	GO:0032585: multivesicular body membrane	1.70E-03
6	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.28E-03
7	GO:0000930: gamma-tubulin complex	2.28E-03
8	GO:0000795: synaptonemal complex	2.91E-03
9	GO:0000815: ESCRT III complex	4.33E-03
10	GO:0009986: cell surface	5.11E-03
11	GO:0005884: actin filament	1.07E-02
12	GO:0005938: cell cortex	1.29E-02
13	GO:0030095: chloroplast photosystem II	1.41E-02
14	GO:0005875: microtubule associated complex	1.65E-02
15	GO:0005634: nucleus	1.88E-02
16	GO:0009654: photosystem II oxygen evolving complex	1.90E-02
17	GO:0005874: microtubule	2.00E-02
18	GO:0015629: actin cytoskeleton	2.31E-02
19	GO:0005871: kinesin complex	2.60E-02
20	GO:0019898: extrinsic component of membrane	3.20E-02
21	GO:0000785: chromatin	3.52E-02
22	GO:0005667: transcription factor complex	4.72E-02