GO Enrichment Analysis of Co-expressed Genes with
AT4G29040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 2 | GO:0046680: response to DDT | 0.00E+00 |
| 3 | GO:0042176: regulation of protein catabolic process | 1.04E-05 |
| 4 | GO:1900424: regulation of defense response to bacterium | 6.26E-05 |
| 5 | GO:0035352: NAD transmembrane transport | 6.26E-05 |
| 6 | GO:0071076: RNA 3' uridylation | 6.26E-05 |
| 7 | GO:0010421: hydrogen peroxide-mediated programmed cell death | 6.26E-05 |
| 8 | GO:0000032: cell wall mannoprotein biosynthetic process | 6.26E-05 |
| 9 | GO:0043687: post-translational protein modification | 6.26E-05 |
| 10 | GO:0009225: nucleotide-sugar metabolic process | 1.34E-04 |
| 11 | GO:0050688: regulation of defense response to virus | 1.52E-04 |
| 12 | GO:0043132: NAD transport | 1.52E-04 |
| 13 | GO:0009156: ribonucleoside monophosphate biosynthetic process | 1.52E-04 |
| 14 | GO:0035335: peptidyl-tyrosine dephosphorylation | 1.52E-04 |
| 15 | GO:0009805: coumarin biosynthetic process | 1.52E-04 |
| 16 | GO:0042853: L-alanine catabolic process | 1.52E-04 |
| 17 | GO:0010253: UDP-rhamnose biosynthetic process | 2.57E-04 |
| 18 | GO:0033591: response to L-ascorbic acid | 2.57E-04 |
| 19 | GO:0048577: negative regulation of short-day photoperiodism, flowering | 3.73E-04 |
| 20 | GO:0006383: transcription from RNA polymerase III promoter | 3.73E-04 |
| 21 | GO:0060964: regulation of gene silencing by miRNA | 3.73E-04 |
| 22 | GO:0009298: GDP-mannose biosynthetic process | 3.73E-04 |
| 23 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 3.73E-04 |
| 24 | GO:0030163: protein catabolic process | 4.86E-04 |
| 25 | GO:0009165: nucleotide biosynthetic process | 4.99E-04 |
| 26 | GO:0033320: UDP-D-xylose biosynthetic process | 4.99E-04 |
| 27 | GO:0033356: UDP-L-arabinose metabolic process | 4.99E-04 |
| 28 | GO:0018279: protein N-linked glycosylation via asparagine | 6.32E-04 |
| 29 | GO:0006555: methionine metabolic process | 7.73E-04 |
| 30 | GO:0042732: D-xylose metabolic process | 7.73E-04 |
| 31 | GO:0010315: auxin efflux | 7.73E-04 |
| 32 | GO:0010043: response to zinc ion | 9.06E-04 |
| 33 | GO:0019509: L-methionine salvage from methylthioadenosine | 9.20E-04 |
| 34 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 9.20E-04 |
| 35 | GO:0006744: ubiquinone biosynthetic process | 1.07E-03 |
| 36 | GO:0000338: protein deneddylation | 1.07E-03 |
| 37 | GO:0010100: negative regulation of photomorphogenesis | 1.41E-03 |
| 38 | GO:0030968: endoplasmic reticulum unfolded protein response | 1.41E-03 |
| 39 | GO:0009699: phenylpropanoid biosynthetic process | 1.41E-03 |
| 40 | GO:0006002: fructose 6-phosphate metabolic process | 1.41E-03 |
| 41 | GO:0006486: protein glycosylation | 1.68E-03 |
| 42 | GO:0043067: regulation of programmed cell death | 1.77E-03 |
| 43 | GO:0051555: flavonol biosynthetic process | 1.96E-03 |
| 44 | GO:0072593: reactive oxygen species metabolic process | 2.17E-03 |
| 45 | GO:0000266: mitochondrial fission | 2.37E-03 |
| 46 | GO:0055046: microgametogenesis | 2.58E-03 |
| 47 | GO:0019853: L-ascorbic acid biosynthetic process | 3.03E-03 |
| 48 | GO:0010053: root epidermal cell differentiation | 3.03E-03 |
| 49 | GO:0034976: response to endoplasmic reticulum stress | 3.26E-03 |
| 50 | GO:0009790: embryo development | 3.44E-03 |
| 51 | GO:0009116: nucleoside metabolic process | 3.49E-03 |
| 52 | GO:0046686: response to cadmium ion | 3.52E-03 |
| 53 | GO:0008299: isoprenoid biosynthetic process | 3.74E-03 |
| 54 | GO:0006366: transcription from RNA polymerase II promoter | 3.98E-03 |
| 55 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.24E-03 |
| 56 | GO:0080092: regulation of pollen tube growth | 4.24E-03 |
| 57 | GO:0019748: secondary metabolic process | 4.24E-03 |
| 58 | GO:0006470: protein dephosphorylation | 4.64E-03 |
| 59 | GO:0042127: regulation of cell proliferation | 4.76E-03 |
| 60 | GO:0006511: ubiquitin-dependent protein catabolic process | 5.35E-03 |
| 61 | GO:0009646: response to absence of light | 5.88E-03 |
| 62 | GO:0010183: pollen tube guidance | 6.17E-03 |
| 63 | GO:0000302: response to reactive oxygen species | 6.46E-03 |
| 64 | GO:0009860: pollen tube growth | 6.75E-03 |
| 65 | GO:0016032: viral process | 6.76E-03 |
| 66 | GO:0001666: response to hypoxia | 8.35E-03 |
| 67 | GO:0045454: cell redox homeostasis | 9.31E-03 |
| 68 | GO:0048573: photoperiodism, flowering | 9.36E-03 |
| 69 | GO:0030244: cellulose biosynthetic process | 1.01E-02 |
| 70 | GO:0009832: plant-type cell wall biogenesis | 1.04E-02 |
| 71 | GO:0007568: aging | 1.11E-02 |
| 72 | GO:0009910: negative regulation of flower development | 1.11E-02 |
| 73 | GO:0034599: cellular response to oxidative stress | 1.23E-02 |
| 74 | GO:0006839: mitochondrial transport | 1.30E-02 |
| 75 | GO:0009744: response to sucrose | 1.42E-02 |
| 76 | GO:0051707: response to other organism | 1.42E-02 |
| 77 | GO:0009640: photomorphogenesis | 1.42E-02 |
| 78 | GO:0000209: protein polyubiquitination | 1.46E-02 |
| 79 | GO:0000165: MAPK cascade | 1.63E-02 |
| 80 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 1.63E-02 |
| 81 | GO:0009585: red, far-red light phototransduction | 1.75E-02 |
| 82 | GO:0009735: response to cytokinin | 1.87E-02 |
| 83 | GO:0006096: glycolytic process | 1.98E-02 |
| 84 | GO:0048316: seed development | 2.02E-02 |
| 85 | GO:0009555: pollen development | 2.05E-02 |
| 86 | GO:0007275: multicellular organism development | 2.09E-02 |
| 87 | GO:0006457: protein folding | 2.65E-02 |
| 88 | GO:0009058: biosynthetic process | 2.75E-02 |
| 89 | GO:0042744: hydrogen peroxide catabolic process | 2.90E-02 |
| 90 | GO:0009617: response to bacterium | 3.77E-02 |
| 91 | GO:0009651: response to salt stress | 4.07E-02 |
| 92 | GO:0071555: cell wall organization | 4.13E-02 |
| 93 | GO:0042742: defense response to bacterium | 4.13E-02 |
| 94 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 4.30E-02 |
| 95 | GO:0007049: cell cycle | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 2 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 3 | GO:0004476: mannose-6-phosphate isomerase activity | 6.26E-05 |
| 4 | GO:0050265: RNA uridylyltransferase activity | 6.26E-05 |
| 5 | GO:1990381: ubiquitin-specific protease binding | 6.26E-05 |
| 6 | GO:0019784: NEDD8-specific protease activity | 6.26E-05 |
| 7 | GO:0030234: enzyme regulator activity | 6.42E-05 |
| 8 | GO:0004725: protein tyrosine phosphatase activity | 1.51E-04 |
| 9 | GO:0010297: heteropolysaccharide binding | 1.52E-04 |
| 10 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 1.52E-04 |
| 11 | GO:0010280: UDP-L-rhamnose synthase activity | 1.52E-04 |
| 12 | GO:0051724: NAD transporter activity | 1.52E-04 |
| 13 | GO:0050347: trans-octaprenyltranstransferase activity | 1.52E-04 |
| 14 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 1.52E-04 |
| 15 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 1.52E-04 |
| 16 | GO:0000030: mannosyltransferase activity | 2.57E-04 |
| 17 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 2.57E-04 |
| 18 | GO:0004749: ribose phosphate diphosphokinase activity | 3.73E-04 |
| 19 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 3.73E-04 |
| 20 | GO:0070628: proteasome binding | 4.99E-04 |
| 21 | GO:0004576: oligosaccharyl transferase activity | 4.99E-04 |
| 22 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 4.99E-04 |
| 23 | GO:0004659: prenyltransferase activity | 4.99E-04 |
| 24 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 6.32E-04 |
| 25 | GO:0031593: polyubiquitin binding | 7.73E-04 |
| 26 | GO:0016688: L-ascorbate peroxidase activity | 7.73E-04 |
| 27 | GO:0048040: UDP-glucuronate decarboxylase activity | 7.73E-04 |
| 28 | GO:0004130: cytochrome-c peroxidase activity | 7.73E-04 |
| 29 | GO:0070403: NAD+ binding | 9.20E-04 |
| 30 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 9.20E-04 |
| 31 | GO:0003872: 6-phosphofructokinase activity | 1.07E-03 |
| 32 | GO:0004722: protein serine/threonine phosphatase activity | 1.52E-03 |
| 33 | GO:0004161: dimethylallyltranstransferase activity | 2.17E-03 |
| 34 | GO:0004190: aspartic-type endopeptidase activity | 3.03E-03 |
| 35 | GO:0004867: serine-type endopeptidase inhibitor activity | 3.03E-03 |
| 36 | GO:0043130: ubiquitin binding | 3.49E-03 |
| 37 | GO:0001046: core promoter sequence-specific DNA binding | 3.49E-03 |
| 38 | GO:0016779: nucleotidyltransferase activity | 4.24E-03 |
| 39 | GO:0003756: protein disulfide isomerase activity | 4.76E-03 |
| 40 | GO:0047134: protein-disulfide reductase activity | 5.03E-03 |
| 41 | GO:0004791: thioredoxin-disulfide reductase activity | 5.88E-03 |
| 42 | GO:0016853: isomerase activity | 5.88E-03 |
| 43 | GO:0008237: metallopeptidase activity | 7.70E-03 |
| 44 | GO:0051213: dioxygenase activity | 8.35E-03 |
| 45 | GO:0004721: phosphoprotein phosphatase activity | 9.36E-03 |
| 46 | GO:0003824: catalytic activity | 1.00E-02 |
| 47 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.11E-02 |
| 48 | GO:0003746: translation elongation factor activity | 1.19E-02 |
| 49 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.19E-02 |
| 50 | GO:0046872: metal ion binding | 1.25E-02 |
| 51 | GO:0016887: ATPase activity | 1.79E-02 |
| 52 | GO:0031625: ubiquitin protein ligase binding | 1.89E-02 |
| 53 | GO:0045735: nutrient reservoir activity | 1.98E-02 |
| 54 | GO:0022857: transmembrane transporter activity | 2.16E-02 |
| 55 | GO:0051082: unfolded protein binding | 2.25E-02 |
| 56 | GO:0030170: pyridoxal phosphate binding | 2.85E-02 |
| 57 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.90E-02 |
| 58 | GO:0015297: antiporter activity | 3.22E-02 |
| 59 | GO:0005525: GTP binding | 3.36E-02 |
| 60 | GO:0008017: microtubule binding | 3.44E-02 |
| 61 | GO:0008168: methyltransferase activity | 4.42E-02 |
| 62 | GO:0000287: magnesium ion binding | 4.48E-02 |
| 63 | GO:0004601: peroxidase activity | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0008541: proteasome regulatory particle, lid subcomplex | 8.84E-07 |
| 3 | GO:0000502: proteasome complex | 6.33E-06 |
| 4 | GO:0000836: Hrd1p ubiquitin ligase complex | 6.26E-05 |
| 5 | GO:0044322: endoplasmic reticulum quality control compartment | 6.26E-05 |
| 6 | GO:0036513: Derlin-1 retrotranslocation complex | 3.73E-04 |
| 7 | GO:0005829: cytosol | 3.91E-04 |
| 8 | GO:0005945: 6-phosphofructokinase complex | 6.32E-04 |
| 9 | GO:0000813: ESCRT I complex | 6.32E-04 |
| 10 | GO:0008250: oligosaccharyltransferase complex | 6.32E-04 |
| 11 | GO:0005788: endoplasmic reticulum lumen | 6.45E-04 |
| 12 | GO:0000326: protein storage vacuole | 1.41E-03 |
| 13 | GO:0008180: COP9 signalosome | 1.58E-03 |
| 14 | GO:0043234: protein complex | 3.26E-03 |
| 15 | GO:0005839: proteasome core complex | 3.98E-03 |
| 16 | GO:0016592: mediator complex | 6.76E-03 |
| 17 | GO:0000932: P-body | 8.35E-03 |
| 18 | GO:0005783: endoplasmic reticulum | 1.05E-02 |
| 19 | GO:0009506: plasmodesma | 1.08E-02 |
| 20 | GO:0009524: phragmoplast | 2.75E-02 |
| 21 | GO:0016020: membrane | 2.91E-02 |
| 22 | GO:0005615: extracellular space | 3.60E-02 |
| 23 | GO:0005774: vacuolar membrane | 4.23E-02 |
| 24 | GO:0016021: integral component of membrane | 4.90E-02 |