co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0000819: sister chromatid segregation	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
5	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
6	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0006907: pinocytosis	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:0046620: regulation of organ growth	6.11E-05
11	GO:0009733: response to auxin	8.61E-05
12	GO:0051513: regulation of monopolar cell growth	1.39E-04
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.84E-04
14	GO:0010583: response to cyclopentenone	3.06E-04
15	GO:0048497: maintenance of floral organ identity	3.54E-04
16	GO:0015904: tetracycline transport	6.94E-04
17	GO:0051013: microtubule severing	6.94E-04
18	GO:0010726: positive regulation of hydrogen peroxide metabolic process	6.94E-04
19	GO:0006438: valyl-tRNA aminoacylation	6.94E-04
20	GO:0070509: calcium ion import	6.94E-04
21	GO:0046520: sphingoid biosynthetic process	6.94E-04
22	GO:0032958: inositol phosphate biosynthetic process	6.94E-04
23	GO:0010480: microsporocyte differentiation	6.94E-04
24	GO:0006426: glycyl-tRNA aminoacylation	6.94E-04
25	GO:0042759: long-chain fatty acid biosynthetic process	6.94E-04
26	GO:0009734: auxin-activated signaling pathway	1.08E-03
27	GO:2000123: positive regulation of stomatal complex development	1.50E-03
28	GO:0010024: phytochromobilin biosynthetic process	1.50E-03
29	GO:1901529: positive regulation of anion channel activity	1.50E-03
30	GO:0061062: regulation of nematode larval development	1.50E-03
31	GO:0001736: establishment of planar polarity	1.50E-03
32	GO:0009786: regulation of asymmetric cell division	1.50E-03
33	GO:0031648: protein destabilization	1.50E-03
34	GO:0009926: auxin polar transport	1.60E-03
35	GO:0006782: protoporphyrinogen IX biosynthetic process	2.09E-03
36	GO:0048829: root cap development	2.09E-03
37	GO:0051301: cell division	2.33E-03
38	GO:0048229: gametophyte development	2.42E-03
39	GO:0045910: negative regulation of DNA recombination	2.47E-03
40	GO:0090506: axillary shoot meristem initiation	2.47E-03
41	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	2.47E-03
42	GO:1902448: positive regulation of shade avoidance	2.47E-03
43	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	2.47E-03
44	GO:0010226: response to lithium ion	2.47E-03
45	GO:0006065: UDP-glucuronate biosynthetic process	2.47E-03
46	GO:0000910: cytokinesis	2.84E-03
47	GO:0006020: inositol metabolic process	3.59E-03
48	GO:0007231: osmosensory signaling pathway	3.59E-03
49	GO:0034059: response to anoxia	3.59E-03
50	GO:0007276: gamete generation	3.59E-03
51	GO:0010088: phloem development	3.59E-03
52	GO:0009558: embryo sac cellularization	3.59E-03
53	GO:0010321: regulation of vegetative phase change	3.59E-03
54	GO:0010371: regulation of gibberellin biosynthetic process	3.59E-03
55	GO:0006468: protein phosphorylation	4.00E-03
56	GO:0070588: calcium ion transmembrane transport	4.02E-03
57	GO:0051726: regulation of cell cycle	4.77E-03
58	GO:0009765: photosynthesis, light harvesting	4.85E-03
59	GO:0033500: carbohydrate homeostasis	4.85E-03
60	GO:2000038: regulation of stomatal complex development	4.85E-03
61	GO:0016042: lipid catabolic process	4.85E-03
62	GO:0042991: transcription factor import into nucleus	4.85E-03
63	GO:0016123: xanthophyll biosynthetic process	6.24E-03
64	GO:0010375: stomatal complex patterning	6.24E-03
65	GO:0016120: carotene biosynthetic process	6.24E-03
66	GO:0045487: gibberellin catabolic process	6.24E-03
67	GO:0007094: mitotic spindle assembly checkpoint	6.24E-03
68	GO:0009793: embryo development ending in seed dormancy	6.46E-03
69	GO:0030001: metal ion transport	6.91E-03
70	GO:0009686: gibberellin biosynthetic process	7.25E-03
71	GO:0010358: leaf shaping	7.75E-03
72	GO:0016554: cytidine to uridine editing	7.75E-03
73	GO:0009913: epidermal cell differentiation	7.75E-03
74	GO:1902456: regulation of stomatal opening	7.75E-03
75	GO:0018258: protein O-linked glycosylation via hydroxyproline	7.75E-03
76	GO:0033365: protein localization to organelle	7.75E-03
77	GO:0003006: developmental process involved in reproduction	7.75E-03
78	GO:0010942: positive regulation of cell death	7.75E-03
79	GO:0010405: arabinogalactan protein metabolic process	7.75E-03
80	GO:0010091: trichome branching	7.90E-03
81	GO:0042127: regulation of cell proliferation	7.90E-03
82	GO:0009744: response to sucrose	8.09E-03
83	GO:2000033: regulation of seed dormancy process	9.37E-03
84	GO:0030488: tRNA methylation	9.37E-03
85	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	9.37E-03
86	GO:0010019: chloroplast-nucleus signaling pathway	9.37E-03
87	GO:0009741: response to brassinosteroid	1.00E-02
88	GO:0009958: positive gravitropism	1.00E-02
89	GO:0010182: sugar mediated signaling pathway	1.00E-02
90	GO:0007018: microtubule-based movement	1.08E-02
91	GO:0009664: plant-type cell wall organization	1.08E-02
92	GO:0048528: post-embryonic root development	1.11E-02
93	GO:1900056: negative regulation of leaf senescence	1.11E-02
94	GO:0048437: floral organ development	1.11E-02
95	GO:0000082: G1/S transition of mitotic cell cycle	1.11E-02
96	GO:0010444: guard mother cell differentiation	1.11E-02
97	GO:0000712: resolution of meiotic recombination intermediates	1.11E-02
98	GO:0045995: regulation of embryonic development	1.11E-02
99	GO:0006351: transcription, DNA-templated	1.16E-02
100	GO:0048825: cotyledon development	1.16E-02
101	GO:0009736: cytokinin-activated signaling pathway	1.19E-02
102	GO:0071554: cell wall organization or biogenesis	1.24E-02
103	GO:0001522: pseudouridine synthesis	1.30E-02
104	GO:0010492: maintenance of shoot apical meristem identity	1.30E-02
105	GO:0000105: histidine biosynthetic process	1.30E-02
106	GO:0010497: plasmodesmata-mediated intercellular transport	1.49E-02
107	GO:0009828: plant-type cell wall loosening	1.51E-02
108	GO:0051865: protein autoubiquitination	1.70E-02
109	GO:0010332: response to gamma radiation	1.70E-02
110	GO:0048507: meristem development	1.70E-02
111	GO:0046916: cellular transition metal ion homeostasis	1.70E-02
112	GO:0000373: Group II intron splicing	1.70E-02
113	GO:0048589: developmental growth	1.70E-02
114	GO:0009056: catabolic process	1.70E-02
115	GO:0009835: fruit ripening	1.70E-02
116	GO:0009638: phototropism	1.91E-02
117	GO:0006779: porphyrin-containing compound biosynthetic process	1.91E-02
118	GO:1900865: chloroplast RNA modification	1.91E-02
119	GO:0007346: regulation of mitotic cell cycle	1.91E-02
120	GO:0006949: syncytium formation	2.13E-02
121	GO:0006259: DNA metabolic process	2.13E-02
122	GO:0010162: seed dormancy process	2.13E-02
123	GO:0015995: chlorophyll biosynthetic process	2.13E-02
124	GO:0009641: shade avoidance	2.13E-02
125	GO:0006298: mismatch repair	2.13E-02
126	GO:0016441: posttranscriptional gene silencing	2.13E-02
127	GO:0006816: calcium ion transport	2.37E-02
128	GO:0008285: negative regulation of cell proliferation	2.37E-02
129	GO:0006265: DNA topological change	2.37E-02
130	GO:0009073: aromatic amino acid family biosynthetic process	2.37E-02
131	GO:0009750: response to fructose	2.37E-02
132	GO:0048765: root hair cell differentiation	2.37E-02
133	GO:0007165: signal transduction	2.42E-02
134	GO:0000160: phosphorelay signal transduction system	2.48E-02
135	GO:0010311: lateral root formation	2.48E-02
136	GO:0071555: cell wall organization	2.48E-02
137	GO:0006312: mitotic recombination	2.61E-02
138	GO:0012501: programmed cell death	2.61E-02
139	GO:0010152: pollen maturation	2.61E-02
140	GO:0010582: floral meristem determinacy	2.61E-02
141	GO:0000266: mitochondrial fission	2.61E-02
142	GO:0006865: amino acid transport	2.86E-02
143	GO:0010588: cotyledon vascular tissue pattern formation	2.86E-02
144	GO:2000012: regulation of auxin polar transport	2.86E-02
145	GO:0030048: actin filament-based movement	2.86E-02
146	GO:0010102: lateral root morphogenesis	2.86E-02
147	GO:0009785: blue light signaling pathway	2.86E-02
148	GO:0009691: cytokinin biosynthetic process	2.86E-02
149	GO:0010628: positive regulation of gene expression	2.86E-02
150	GO:0010075: regulation of meristem growth	2.86E-02
151	GO:0009725: response to hormone	2.86E-02
152	GO:0006302: double-strand break repair	3.11E-02
153	GO:0048467: gynoecium development	3.11E-02
154	GO:0010207: photosystem II assembly	3.11E-02
155	GO:0007034: vacuolar transport	3.11E-02
156	GO:0010223: secondary shoot formation	3.11E-02
157	GO:0009887: animal organ morphogenesis	3.11E-02
158	GO:0009934: regulation of meristem structural organization	3.11E-02
159	GO:0009825: multidimensional cell growth	3.38E-02
160	GO:0090351: seedling development	3.38E-02
161	GO:0040008: regulation of growth	3.49E-02
162	GO:0006631: fatty acid metabolic process	3.55E-02
163	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-02
164	GO:0000162: tryptophan biosynthetic process	3.65E-02
165	GO:0010025: wax biosynthetic process	3.65E-02
166	GO:0006636: unsaturated fatty acid biosynthetic process	3.65E-02
167	GO:0006863: purine nucleobase transport	3.65E-02
168	GO:0006833: water transport	3.65E-02
169	GO:0051017: actin filament bundle assembly	3.93E-02
170	GO:0042546: cell wall biogenesis	4.01E-02
171	GO:0009416: response to light stimulus	4.21E-02
172	GO:0019953: sexual reproduction	4.21E-02
173	GO:0006418: tRNA aminoacylation for protein translation	4.21E-02
174	GO:0043622: cortical microtubule organization	4.21E-02
175	GO:0010431: seed maturation	4.51E-02
176	GO:0051321: meiotic cell cycle	4.51E-02
177	GO:0003333: amino acid transmembrane transport	4.51E-02
178	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0009899: ent-kaurene synthase activity	0.00E+00
9	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
10	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.91E-04
11	GO:0010011: auxin binding	2.36E-04
12	GO:0000170: sphingosine hydroxylase activity	6.94E-04
13	GO:0000829: inositol heptakisphosphate kinase activity	6.94E-04
14	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	6.94E-04
15	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	6.94E-04
16	GO:0000828: inositol hexakisphosphate kinase activity	6.94E-04
17	GO:0008568: microtubule-severing ATPase activity	6.94E-04
18	GO:0009374: biotin binding	6.94E-04
19	GO:0052381: tRNA dimethylallyltransferase activity	6.94E-04
20	GO:0004832: valine-tRNA ligase activity	6.94E-04
21	GO:0004820: glycine-tRNA ligase activity	6.94E-04
22	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	6.94E-04
23	GO:0010012: steroid 22-alpha hydroxylase activity	6.94E-04
24	GO:0010296: prenylcysteine methylesterase activity	1.50E-03
25	GO:0004674: protein serine/threonine kinase activity	1.50E-03
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.50E-03
27	GO:0004109: coproporphyrinogen oxidase activity	1.50E-03
28	GO:0042284: sphingolipid delta-4 desaturase activity	1.50E-03
29	GO:0008493: tetracycline transporter activity	1.50E-03
30	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.50E-03
31	GO:0070330: aromatase activity	2.47E-03
32	GO:0003913: DNA photolyase activity	2.47E-03
33	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.47E-03
34	GO:0016298: lipase activity	2.67E-03
35	GO:0008017: microtubule binding	2.81E-03
36	GO:0052689: carboxylic ester hydrolase activity	2.89E-03
37	GO:0003777: microtubule motor activity	2.97E-03
38	GO:0005262: calcium channel activity	3.16E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	3.59E-03
40	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.59E-03
41	GO:0003916: DNA topoisomerase activity	3.59E-03
42	GO:0005096: GTPase activator activity	4.59E-03
43	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.85E-03
44	GO:0010328: auxin influx transmembrane transporter activity	4.85E-03
45	GO:0019199: transmembrane receptor protein kinase activity	4.85E-03
46	GO:0033612: receptor serine/threonine kinase binding	6.06E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	6.24E-03
48	GO:0018685: alkane 1-monooxygenase activity	6.24E-03
49	GO:0003989: acetyl-CoA carboxylase activity	6.24E-03
50	GO:0030570: pectate lyase activity	7.25E-03
51	GO:0005515: protein binding	7.40E-03
52	GO:0030983: mismatched DNA binding	7.75E-03
53	GO:1990714: hydroxyproline O-galactosyltransferase activity	7.75E-03
54	GO:0004709: MAP kinase kinase kinase activity	7.75E-03
55	GO:0043621: protein self-association	8.95E-03
56	GO:0016832: aldehyde-lyase activity	9.37E-03
57	GO:0016853: isomerase activity	1.08E-02
58	GO:0009881: photoreceptor activity	1.11E-02
59	GO:0042803: protein homodimerization activity	1.21E-02
60	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.30E-02
61	GO:0000156: phosphorelay response regulator activity	1.41E-02
62	GO:0051015: actin filament binding	1.41E-02
63	GO:0003724: RNA helicase activity	1.49E-02
64	GO:0046914: transition metal ion binding	1.49E-02
65	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.49E-02
66	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.49E-02
67	GO:0004650: polygalacturonase activity	1.66E-02
68	GO:0016413: O-acetyltransferase activity	1.70E-02
69	GO:0003779: actin binding	1.79E-02
70	GO:0009055: electron carrier activity	1.81E-02
71	GO:0004519: endonuclease activity	1.86E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	2.01E-02
73	GO:0004672: protein kinase activity	2.41E-02
74	GO:0009982: pseudouridine synthase activity	2.86E-02
75	GO:0004565: beta-galactosidase activity	2.86E-02
76	GO:0003725: double-stranded RNA binding	2.86E-02
77	GO:0015266: protein channel activity	2.86E-02
78	GO:0043565: sequence-specific DNA binding	2.92E-02
79	GO:0003774: motor activity	3.11E-02
80	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.11E-02
81	GO:0008146: sulfotransferase activity	3.38E-02
82	GO:0003712: transcription cofactor activity	3.38E-02
83	GO:0004190: aspartic-type endopeptidase activity	3.38E-02
84	GO:0005524: ATP binding	3.69E-02
85	GO:0004871: signal transducer activity	3.74E-02
86	GO:0051536: iron-sulfur cluster binding	3.93E-02
87	GO:0004722: protein serine/threonine phosphatase activity	4.00E-02
88	GO:0005345: purine nucleobase transmembrane transporter activity	4.21E-02
89	GO:0008094: DNA-dependent ATPase activity	4.51E-02
90	GO:0004176: ATP-dependent peptidase activity	4.51E-02
91	GO:0008408: 3'-5' exonuclease activity	4.51E-02
92	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0000791: euchromatin	6.94E-04
4	GO:0009986: cell surface	8.35E-04
5	GO:0030870: Mre11 complex	1.50E-03
6	GO:0030139: endocytic vesicle	2.47E-03
7	GO:0009317: acetyl-CoA carboxylase complex	2.47E-03
8	GO:0032585: multivesicular body membrane	3.59E-03
9	GO:0009531: secondary cell wall	3.59E-03
10	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.85E-03
11	GO:0005828: kinetochore microtubule	4.85E-03
12	GO:0000795: synaptonemal complex	6.24E-03
13	GO:0000776: kinetochore	6.24E-03
14	GO:0015629: actin cytoskeleton	7.25E-03
15	GO:0005874: microtubule	7.69E-03
16	GO:0000793: condensed chromosome	7.75E-03
17	GO:0005871: kinesin complex	8.57E-03
18	GO:0010369: chromocenter	9.37E-03
19	GO:0000777: condensed chromosome kinetochore	9.37E-03
20	GO:0000815: ESCRT III complex	9.37E-03
21	GO:0000794: condensed nuclear chromosome	1.11E-02
22	GO:0046658: anchored component of plasma membrane	1.54E-02
23	GO:0010494: cytoplasmic stress granule	1.70E-02
24	GO:0005886: plasma membrane	1.71E-02
25	GO:0005876: spindle microtubule	1.91E-02
26	GO:0016459: myosin complex	2.13E-02
27	GO:0090404: pollen tube tip	2.37E-02
28	GO:0005884: actin filament	2.37E-02
29	GO:0009508: plastid chromosome	2.86E-02
30	GO:0005578: proteinaceous extracellular matrix	2.86E-02
31	GO:0030095: chloroplast photosystem II	3.11E-02
32	GO:0009570: chloroplast stroma	3.14E-02
33	GO:0005875: microtubule associated complex	3.65E-02
34	GO:0009654: photosystem II oxygen evolving complex	4.21E-02
35	GO:0005856: cytoskeleton	4.32E-02
36	GO:0009507: chloroplast	4.72E-02